mRNA_P-fluviatile_contig13.1910.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1910.1
Unique NamemRNA_P-fluviatile_contig13.1910.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1910.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.730e-18
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 3 
Query:  165 QIVLRKVFQSASLREIKADVKAFFVTRFKGRGRELPSVVYSDKCCEDQALM-KIFGESHSKGCDFSVDAFAPTPSDIPAFGLLPEGKNTGYIHASKNTHLARAGIDKLRQEARASGHIIGFDIEYAV 542
            ++VL+K  QSASLRE+K D+KA F+TR+ G G +LP +V +D+CC D+AL+ +IF E  S+G  FSV    P  S+ P   L P+      + A++++   +A +D +R +A A+  ++  DIE+ +
Sbjct:  136 EVVLQKALQSASLRELKQDLKALFITRYTGGGFKLPRLVSTDECCNDKALLNEIFEELASEGHQFSVTNSVPIASECPVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEI 262
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BLAST of mRNA_P-fluviatile_contig13.1910.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.190e-16
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 3 
Query:  159 RLQIVLRKVFQSASLREIKADVKAFFVTRFKGRGRELPSVVYSDKCCEDQALMK-IFGESHSKGCDFSVDAFAPTPSDIPAFGLLPEGKNTGYIHASKNTHLARAGIDKLRQEA 497
            ++ +VL+K  QS SLRE+K D+KA FVTR+KG G +LP +V +D+CC D+AL+  IF E  S+G  FSV    P  S+ P   L P+      + A++++   +A +D  R +A
Sbjct:  155 QIVVVLQKALQSGSLRELKQDLKALFVTRYKGGGFKLPRLVSTDECCNDKALLNDIFEELASEGHQFSVTNSVPIASECPVLQLPPDVVLGEPVKANQDSPCLKAAVDTTRMQA 268
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BLAST of mRNA_P-fluviatile_contig13.1910.1 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.660e-7
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  165 QIVLRKVFQSASLREIKADVKAFFVTRFKGRGRELPSVVYSDKCCED-QALMKIFGESHSKGCDFSVDAFAPTPSDIPAFGLLPEGKNTGYIH 440
            Q++  KV  +AS+ ++K D+K  FV RF G G +LP + YSD CCED Q L+ +F E  S+      DA A    ++    + P GK    ++
Sbjct:   51 QVIFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQLLLSMFKEIESEDHVRLYDAAAEGAIELLPELMFPPGKRGELVY 143
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BLAST of mRNA_P-fluviatile_contig13.1910.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.050e-6
Identity = 39/131 (29.77%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  165 QIVLRKVFQSASLREIKADVKAFFVTRFKGRGRELPSVVYSDKCCEDQALM-----KIFGESHSKGCDFSVDAFAPTPSD--IPAFGLLPEGKNTGYIHASKNTHLARAGIDKLRQEARASGHIIGFDIEY 536
            Q+V  K   +AS+ ++K D+K  FV RF G G +LP + YSD+CC+D+ L+     +I  E+ ++  D + +A   +P    +PA    P GK    +   +   +A + +  L    +  G+++G D E+
Sbjct:  301 QVVFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFKEIELETGARLYDTAEEAGGGSPGVEVLPALEF-PPGKRGECVFDFRPNSIAPSVV-ALIDGCQLQGNVLGLDCEW 429
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.730e-1839.373'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KFL9_9PHAE2.190e-1641.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYR4_9PHAE7.660e-736.563'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV2_ECTSI5.050e-629.773'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2800588..2802488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.9e-06
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size1564
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1910.1prot_P-fluviatile_contig13.1910.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2801211..2802351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.1422215-UTR-P-fluviatile_contig13:2800587..28012101622815536.1422215-UTR-P-fluviatile_contig13:2800587..2801210Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2800588..2801210 -
1693562171.3490129-UTR-P-fluviatile_contig13:2800587..28012101693562171.3490129-UTR-P-fluviatile_contig13:2800587..2801210Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2800588..2801210 -
1622815536.1838288-UTR-P-fluviatile_contig13:2802351..28024881622815536.1838288-UTR-P-fluviatile_contig13:2802351..2802488Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2802352..2802488 -
1693562171.3743749-UTR-P-fluviatile_contig13:2802351..28024881693562171.3743749-UTR-P-fluviatile_contig13:2802351..2802488Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2802352..2802488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.1554837-CDS-P-fluviatile_contig13:2801210..28016191622815536.1554837-CDS-P-fluviatile_contig13:2801210..2801619Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2801211..2801619 -
1693562171.3588717-CDS-P-fluviatile_contig13:2801210..28016191693562171.3588717-CDS-P-fluviatile_contig13:2801210..2801619Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2801211..2801619 -
1622815536.1708972-CDS-P-fluviatile_contig13:2801956..28023511622815536.1708972-CDS-P-fluviatile_contig13:2801956..2802351Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2801957..2802351 -
1693562171.366361-CDS-P-fluviatile_contig13:2801956..28023511693562171.366361-CDS-P-fluviatile_contig13:2801956..2802351Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2801957..2802351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1910.1

>prot_P-fluviatile_contig13.1910.1 ID=prot_P-fluviatile_contig13.1910.1|Name=mRNA_P-fluviatile_contig13.1910.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=268bp
MHQCSDNRLQIVLRKVFQSASLREIKADVKAFFVTRFKGRGRELPSVVYS
DKCCEDQALMKIFGESHSKGCDFSVDAFAPTPSDIPAFGLLPEGKNTGYI
HASKNTHLARAGIDKLRQEARASGHIIGFDIEYAVCDTYVAYLLYGRISE
LSDQIFKDAEELHVGESVRLLNAGGWLRGRRPFSLRTAKTHGGPRGSSSH
LDMLRVAKVDIGWCGYRKRTVPHQHFVSRRDRCTGAPADRVCGRPDGSES
AVGLSTHAQGSCRRWRC*
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mRNA from alignment at P-fluviatile_contig13:2800588..2802488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1910.1 ID=mRNA_P-fluviatile_contig13.1910.1|Name=mRNA_P-fluviatile_contig13.1910.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1901bp|location=Sequence derived from alignment at P-fluviatile_contig13:2800588..2802488- (Porterinema fluviatile SAG_2381)
GGTGTGCGCAGTACCTCTTCAATTTTCCCCCCGGTGACCAACGGTTGCTT
TTTCGGTTGTTCTCCACAGGCTCTGATATTTTTTGTCGTTGACTGAGTGC
GTGGCCATCACTCCACGCTCCATGTCATGACATCTTGATGCATCAATGCT
CCGACAATCGCCTGCAGATTGTTCTCCGAAAGGTATTTCAGTCGGCCTCG
CTCAGGGAAATCAAGGCTGATGTCAAAGCTTTTTTCGTGACACGATTCAA
GGGCAGAGGTCGCGAGTTGCCTTCGGTAGTGTACTCGGACAAGTGCTGCG
AAGACCAAGCGCTGATGAAGATCTTTGGGGAGTCGCACAGTAAGGGGTGC
GATTTTTCCGTCGACGCTTTTGCACCGACTCCCTCTGATATTCCAGCGTT
CGGACTTCTTCCCGAAGGAAAAAATACTGGGTACATTCACGCGAGCAAGA
ACACTCACTTGGCACGGGCAGGAATTGACAAGCTGCGACAGGAAGCTAGA
GCAAGCGGTCATATCATTGGTTTCGACATCGAGTGAGTGTTGTCTCGTGC
CGGCGACCCTCCCAATCCACCCGCCACAATTCAGTTGGCCGATTTGTGCC
TTCAACTGCTGGGGGAAAGCCTGGAGGAGCAGTAGCGCCTGAGACTTTCG
CGCTGGAACATCGCGGCGCTAACGGGGGAGCAGAAAGGGCGACGTTTCGC
CTTAGAAAACCATGTTTTCTAAGCAAAGCAGCACTCGGTCTGATCTCCCG
CCCTCTTTCGCTGTCTACTCCTTAATTTCGCACGGCCGCCCGCTCCCCTC
CTGAGTTTCTTCCGTGACGCTTCCCGAGACACTTTCCGTCCCCACCCCAT
CATATGTTCCTTTCCGCAGGTATGCTGTGTGCGATACGTATGTGGCGTAC
CTGTTGTATGGGCGCATCTCGGAGCTTTCGGACCAGATTTTCAAGGATGC
AGAGGAGCTGCATGTCGGAGAGAGCGTTCGTCTTTTAAACGCGGGGGGAT
GGTTGCGTGGGAGAAGGCCGTTTTCATTGCGTACGGCCAAGACACATGGG
GGTCCACGGGGATCTTCCTCGCACCTCGACATGCTACGCGTGGCCAAAGT
GGACATTGGGTGGTGCGGATATCGGAAGCGCACTGTCCCTCACCAGCACT
TTGTGTCCAGACGAGACCGATGTACCGGGGCCCCAGCCGACCGCGTGTGT
GGGAGACCGGATGGATCAGAATCTGCTGTGGGACTCAGCACGCATGCGCA
AGGCAGCTGCCGGCGCTGGAGATGCTAGAAGGGGCGCGGATCCCGTGGCT
GCAGCTTCGACTCAAAACGCTGGGCCACGTTCTGGGCAGGGAGCCGTGTC
CACGGCAGCCAAGGCGTCGAGCGCGACTGCTGCCCTCTTCAGGACTCCTT
TTGAGCCCTTTTTTGCTGGGGATTTTTCCGGGGTCGAAGCGCTGAGCGCT
GTTGTGTCCGCGATGAATGCGGGGGTGGACAAGTTGTGCGTACGGAGTGG
GACGCAGCGCAGCGACTCATCGGGGGGTGGAGGCGAGGCTAAGAGCAGCG
AGTCGGGTGAGGCCTAACCCATCTTGAGGAAGACGGCTGCATTCTTGAAA
GCGCATTAGACCAGGTGGGGAGAAGTCGGGCTGTGTTCCACTTATTATCT
CGTCTATTCGTCCCGCTTGACAGAGGTCCTCACTGTTCAATTAACGGTGC
CTTTCTCTATTGAATGCCAAACCCGCGTGGGAGGCACCACGAATCCATCA
ACATGAGGGACACCATGCGAGCTGCTGAGTTCGCCGATGCGGCCGCTCGG
AGCCACCTTCATGCACCCGCGGAGGTACTAGGCGTCACAGCTGCCCCGGC
AGAGCCCTGAATACTCCAAGCGCCCGATACCTTCTCCTTTCCTACTCAGG
T
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2800588..2802488-

>mRNA_P-fluviatile_contig13.1910.1 ID=mRNA_P-fluviatile_contig13.1910.1|Name=mRNA_P-fluviatile_contig13.1910.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1608bp|location=Sequence derived from alignment at P-fluviatile_contig13:2800588..2802488- (Porterinema fluviatile SAG_2381)
ATGCATCAATGCTCCGACAATCGCCTGCAGATTGTTCTCCGAAAGGTATT
TCAGTCGGCCTCGCTCAGGGAAATCAAGGCTGATGTCAAAGCTTTTTTCG
TGACACGATTCAAGGGCAGAGGTCGCGAGTTGCCTTCGGTAGTGTACTCG
GACAAGTGCTGCGAAGACCAAGCGCTGATGAAGATCTTTGGGGAGTCGCA
CAGTAAGGGGTGCGATTTTTCCGTCGACGCTTTTGCACCGACTCCCTCTG
ATATTCCAGCGTTCGGACTTCTTCCCGAAGGAAAAAATACTGGGTACATT
CACGCGAGCAAGAACACTCACTTGGCACGGGCAGGAATTGACAAGCTGCG
ACAGGAAGCTAGAGCAAGCGGTCATATCATTGGTTTCGACATCGAATGCA
TCAATGCTCCGACAATCGCCTGCAGATTGTTCTCCGAAAGGTATTTCAGT
CGGCCTCGCTCAGGGAAATCAAGGCTGATGTCAAAGCTTTTTTCGTGACA
CGATTCAAGGGCAGAGGTCGCGAGTTGCCTTCGGTAGTGTACTCGGACAA
GTGCTGCGAAGACCAAGCGCTGATGAAGATCTTTGGGGAGTCGCACAGTA
AGGGGTGCGATTTTTCCGTCGACGCTTTTGCACCGACTCCCTCTGATATT
CCAGCGTTCGGACTTCTTCCCGAAGGAAAAAATACTGGGTACATTCACGC
GAGCAAGAACACTCACTTGGCACGGGCAGGAATTGACAAGCTGCGACAGG
AAGCTAGAGCAAGCGGTCATATCATTGGTTTCGACATCGAGTATGCTGTG
TGCGATACGTATGTGGCGTACCTGTTGTATGGGCGCATCTCGGAGCTTTC
GGACCAGATTTTCAAGGATGCAGAGGAGCTGCATGTCGGAGAGAGCGTTC
GTCTTTTAAACGCGGGGGGATGGTTGCGTGGGAGAAGGCCGTTTTCATTG
CGTACGGCCAAGACACATGGGGGTCCACGGGGATCTTCCTCGCACCTCGA
CATGCTACGCGTGGCCAAAGTGGACATTGGGTGGTGCGGATATCGGAAGC
GCACTGTCCCTCACCAGCACTTTGTGTCCAGACGAGACCGATGTACCGGG
GCCCCAGCCGACCGCGTGTGTGGGAGACCGGATGGATCAGAATCTGCTGT
GGGACTCAGCACGCATGCGCAAGGCAGCTGCCGGCGCTGGAGATGCTAGG
TATGCTGTGTGCGATACGTATGTGGCGTACCTGTTGTATGGGCGCATCTC
GGAGCTTTCGGACCAGATTTTCAAGGATGCAGAGGAGCTGCATGTCGGAG
AGAGCGTTCGTCTTTTAAACGCGGGGGGATGGTTGCGTGGGAGAAGGCCG
TTTTCATTGCGTACGGCCAAGACACATGGGGGTCCACGGGGATCTTCCTC
GCACCTCGACATGCTACGCGTGGCCAAAGTGGACATTGGGTGGTGCGGAT
ATCGGAAGCGCACTGTCCCTCACCAGCACTTTGTGTCCAGACGAGACCGA
TGTACCGGGGCCCCAGCCGACCGCGTGTGTGGGAGACCGGATGGATCAGA
ATCTGCTGTGGGACTCAGCACGCATGCGCAAGGCAGCTGCCGGCGCTGGA
GATGCTAG
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