mRNA_P-fluviatile_contig13.1881.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1881.1
Unique NamemRNA_P-fluviatile_contig13.1881.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: D7FLG1_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG1_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.030e-21
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQVGLSACGLGKQY VAG LTNCH C Y N+TSKYF V  P+LR YLAGEG
Sbjct:  123 KKQQVGLSACGLGKQYAVAGLLTNCHSCFYGNSTSKYFGVPTPTLRAYLAGEG 175
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BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5KFU8_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.460e-19
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQVGLSACGLGKQY VAG LTNCH C Y N+T++YF ++ PSL EYL GEG
Sbjct:  194 KKQQVGLSACGLGKQYSVAGILTNCHCCFYPNSTAQYFDLQPPSLEEYLQGEG 246
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BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5JL10_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL10_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.160e-19
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQVGLSACGLGKQY VAG LTNCH CLY N+T++YF ++ P L EYL GEG
Sbjct:  189 KKQQVGLSACGLGKQYSVAGILTNCHCCLYPNSTAQYFDLQPPCLEEYLQGEG 241
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5K8W1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.810e-19
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQV LSACGLGKQY VAG LTNCH C Y N+T+K+F +  PSL+EYL+G+G
Sbjct:   70 KKQQVVLSACGLGKQYAVAGILTNCHCCFYPNSTAKFFDLTPPSLQEYLSGQG 122
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5K122_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K122_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.280e-18
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQVGLSACGLGKQY VAG LTNCH C Y N+T++YF ++ PSL EYL GEG
Sbjct:  329 KKQQVGLSACGLGKQYSVAGILTNCHCCFYPNSTAQYFDLQPPSLEEYLQGEG 381
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5KDJ8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.900e-18
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    7 KQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KQQVGLSACGLGKQY VAG LTNCH C Y N+T++YF ++ PSL EYL GEG
Sbjct:  271 KQQVGLSACGLGKQYSVAGILTNCHCCFYPNSTAQYFDLQPPSLEEYLQGEG 322
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5L1C2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.790e-18
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQV LSACGLGKQY VAG LTNCH C Y N+T++YF V+ PSL EYL GEG
Sbjct:  259 KKQQVALSACGLGKQYAVAGMLTNCHNCFYPNSTAQYFDVQPPSLEEYLLGEG 311
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5L5B8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.870e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQV LSACGLGKQY VAG LTNCH C Y N+T K+F +  PSL+EYL+GEG
Sbjct:  190 KKQQVALSACGLGKQYAVAGILTNCHCCFYPNSTVKFFDLAPPSLQEYLSGEG 242
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: D7FLB2_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.090e-18
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQ  LS+CGLGKQY VAG LTNCH C Y N+TSKYF V  PSL  YL+GEG
Sbjct:  155 KKQQAALSSCGLGKQYSVAGILTNCHSCFYGNSTSKYFGVGPPSLGRYLSGEG 207
[Close]
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Match: A0A6H5JZP9_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.250e-18
Identity = 40/53 (75.47%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 KKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYLAGEG 162
            KKQQV LSACGLGKQY VAG LTN H C YRN TS YF V  PSLR YL GEG
Sbjct:  114 KKQQVALSACGLGKQYAVAGILTNYHSCFYRNNTSFYFDVNPPSLRSYLNGEG 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG1_ECTSI5.030e-2179.25DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KFU8_9PHAE2.460e-1973.58DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JL10_9PHAE3.160e-1973.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K8W1_9PHAE9.810e-1969.81DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K122_9PHAE1.280e-1873.58DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KDJ8_9PHAE3.900e-1873.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L1C2_9PHAE4.790e-1873.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L5B8_9PHAE4.870e-1871.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FLB2_ECTSI7.090e-1871.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZP9_9PHAE8.250e-1875.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2502374..2502630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog2880.D7FLG1
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_005010.2
Exons1
Model size259
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.6780906-CDS-P-fluviatile_contig13:2502373..25026281622815576.6780906-CDS-P-fluviatile_contig13:2502373..2502628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2502374..2502628 +
1693562292.0895348-CDS-P-fluviatile_contig13:2502373..25026281693562292.0895348-CDS-P-fluviatile_contig13:2502373..2502628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2502374..2502628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1881.1prot_P-fluviatile_contig13.1881.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2502374..2502628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1881.1

>prot_P-fluviatile_contig13.1881.1 ID=prot_P-fluviatile_contig13.1881.1|Name=mRNA_P-fluviatile_contig13.1881.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
KKKQQVGLSACGLGKQYQVAGFLTNCHLCLYRNATSKYFRVRAPSLREYL
AGEGYMSTLLRAVVDGIKVVLCRVWISYSGASAVT
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mRNA from alignment at P-fluviatile_contig13:2502374..2502630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1881.1 ID=mRNA_P-fluviatile_contig13.1881.1|Name=mRNA_P-fluviatile_contig13.1881.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=257bp|location=Sequence derived from alignment at P-fluviatile_contig13:2502374..2502630+ (Porterinema fluviatile SAG_2381)
AAGAAGAAACAACAGGTCGGTCTCAGCGCGTGCGGGCTTGGGAAGCAGTA
CCAGGTTGCCGGCTTTTTGACCAACTGCCACTTGTGCCTGTACAGGAACG
CTACTTCAAAATACTTCCGTGTCCGGGCGCCTTCTCTCCGCGAATATCTT
GCCGGAGAGGGTTATATGTCTACCTTACTTCGGGCAGTTGTTGATGGGAT
AAAAGTCGTGCTCTGTCGTGTTTGGATCTCTTATTCTGGCGCGTCGGCAG
TTACCAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2502374..2502630+

>mRNA_P-fluviatile_contig13.1881.1 ID=mRNA_P-fluviatile_contig13.1881.1|Name=mRNA_P-fluviatile_contig13.1881.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig13:2502374..2502630+ (Porterinema fluviatile SAG_2381)
AAGAAGAAACAACAGGTCGGTCTCAGCGCGTGCGGGCTTGGGAAGCAGTA
CCAGGTTGCCGGCTTTTTGACCAACTGCCACTTGTGCCTGTACAGGAACG
CTACTTCAAAATACTTCCGTGTCCGGGCGCCTTCTCTCCGCGAATATCTT
GCCGGAGAGGGTTATATGTCTACCTTACTTCGGGCAGTTGTTGATGGGAT
AAAAGTCGTGCTCTGTCGTGTTTGGATCTCTTATTCTGGCGCGTCGGCAG
TTACCAAGAAGAAACAACAGGTCGGTCTCAGCGCGTGCGGGCTTGGGAAG
CAGTACCAGGTTGCCGGCTTTTTGACCAACTGCCACTTGTGCCTGTACAG
GAACGCTACTTCAAAATACTTCCGTGTCCGGGCGCCTTCTCTCCGCGAAT
ATCTTGCCGGAGAGGGTTATATGTCTACCTTACTTCGGGCAGTTGTTGAT
GGGATAAAAGTCGTGCTCTGTCGTGTTTGGATCTCTTATTCTGGCGCGTC
GGCAGTTACC
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