mRNA_P-fluviatile_contig13.1880.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1880.1
Unique NamemRNA_P-fluviatile_contig13.1880.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: D7G529_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G529_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.720e-34
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 REWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            +E +LY QL++PTTLPG+ P  DF EVIGGFDFKELFRFEK HF +LL  LELP++ E+ RGG+   +VP  LA  +TLWRLA PTTL+RDRLF
Sbjct:   23 QEMALYDQLVAPTTLPGVCPHFDFFEVIGGFDFKELFRFEKPHFLRLLDALELPEYFELHRGGYGVSKVPARLALGVTLWRLACPTTLLRDRLF 116          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5KH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH24_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.580e-34
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 EWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            EW  + +L++PTTL GL P  +  E IGGFDFKE+FRFE  HF QLL  LELP   E+SRGG+   RVP ++A ALTLWRL+APTTL+RDRLF
Sbjct:   46 EWRRHHELLAPTTLEGLFPNLNCFEAIGGFDFKEVFRFENPHFLQLLRRLELPDSFEVSRGGYGVTRVPADVALALTLWRLSAPTTLVRDRLF 138          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5JXV8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.040e-32
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   16 YQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            Y+QL+ PTT  G+ PTH+F+EVIGGFDF+ELFRFEK  F  LL + ELP  +EI RGGF   RVPME+A  LTLWRLA PTTL+RDRLF
Sbjct:   50 YEQLVEPTTHAGMYPTHNFMEVIGGFDFRELFRFEKPDFILLLEVQELPAELEIHRGGFGTSRVPMEIALGLTLWRLACPTTLLRDRLF 138          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5KAA1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.820e-32
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    4 EWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            +W  Y +L++PT L G+   +DF+EV+GGFDFKE+FRFEK HFRQLL  LELP  +EI RGGF   R+P  LA A+TLWR AAPTTL+RDRLF
Sbjct:   46 KWRAYLELVAPTQLGGV--RYDFMEVLGGFDFKEVFRFEKSHFRQLLAALELPPELEIRRGGFGTQRIPASLALAVTLWRFAAPTTLLRDRLF 136          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5KL05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL05_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.710e-32
Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    4 EWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            EW  Y +L+ PTTL G+ P  +F E IGGFDFKE+FRFEK HF QLL  LELP   E+SR G+   RVP  +A ALTLWRL+APTTL+RDRLF
Sbjct:   10 EWRRYHELLGPTTLEGVFPNLNFFEAIGGFDFKEVFRFEKPHFLQLLRRLELPDSFEVSRQGYGVTRVPAYVALALTLWRLSAPTTLVRDRLF 102          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5L0G5_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.860e-32
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   16 YQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            Y++LI+PT L G+ P ++F + IGG DFKELFRFEK HFR+LL  L+LP+ +EI RGGF   RVP++LA A+T+WRLA PTTLIRDRLF
Sbjct:   50 YEELIAPTILEGVCPMYNFFDAIGGLDFKELFRFEKPHFRELLHELQLPEEIEIHRGGFGVSRVPIDLALAVTIWRLACPTTLIRDRLF 138          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5JNG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.070e-32
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    4 EWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTL-WRLAAPTTLIRDRLF 282
            EW  Y +L++PTTL G+ P  +F E IGGFDFKE+FRFEK HF QLL  LELP   E+SRGG+   RVP ++A ALTL WRL+APTTL+RDR F
Sbjct:   46 EWRRYHELLAPTTLEGVFPNLNFFEAIGGFDFKEVFRFEKPHFLQLLRRLELPDSSEVSRGGYGVTRVPADVALALTLLWRLSAPTTLVRDRSF 139          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5KR86_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR86_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.370e-31
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   16 YQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            Y++LI+PT L G+ PT++    IGG DFKELFRFEK HFRQLL  LELP+ +EI RGG+   RVP ++A A+T+WRLA PTTLIRDRLF
Sbjct:   50 YEELITPTILEGVYPTYNLFYAIGGMDFKELFRFEKPHFRQLLYELELPKCIEIYRGGYGVTRVPADIALAVTIWRLACPTTLIRDRLF 138          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5JRM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.980e-31
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   16 YQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            Y++LI+PT L G+ P ++F + +GG D KELFRFEK HFR+LL  L+LP+ +E  RGGF    VP++LA A+T WRLA PTTLIRDRLF
Sbjct:   12 YEELIAPTILEGVCPMYNFFDAVGGLDLKELFRFEKPHFRELLHELQLPEEIEFHRGGFRVSTVPIDLALAVTNWRLACPTTLIRDRLF 100          
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Match: A0A6H5L856_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L856_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.020e-30
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 EWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVLLELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF 282
            +W  Y++L+ PT L G+   +DF EV+GGFDFKELFRFEK HF  LL  LELP  +EI RGG++  R+P  L  A+TLWRLAAPTTL+RDRLF
Sbjct:   46 KWRAYEELVRPTVLDGV--RYDFFEVLGGFDFKELFRFEKPHFLLLLAALELPAELEIWRGGYSCQRIPARLGLAVTLWRLAAPTTLLRDRLF 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G529_ECTSI1.720e-3464.89DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KH24_9PHAE5.580e-3462.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV8_9PHAE1.040e-3267.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KAA1_9PHAE2.820e-3263.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KL05_9PHAE5.710e-3263.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0G5_9PHAE7.860e-3264.04DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JNG9_9PHAE9.070e-3262.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR86_9PHAE4.370e-3164.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JRM7_9PHAE4.980e-3159.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L856_9PHAE6.020e-3061.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2500899..2501794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7G529
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.6281145-CDS-P-fluviatile_contig13:2500898..25010801622815576.6281145-CDS-P-fluviatile_contig13:2500898..2501080Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2500899..2501080 +
1693562292.061772-CDS-P-fluviatile_contig13:2500898..25010801693562292.061772-CDS-P-fluviatile_contig13:2500898..2501080Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2500899..2501080 +
1622815576.641121-CDS-P-fluviatile_contig13:2501694..25017941622815576.641121-CDS-P-fluviatile_contig13:2501694..2501794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2501695..2501794 +
1693562292.079285-CDS-P-fluviatile_contig13:2501694..25017941693562292.079285-CDS-P-fluviatile_contig13:2501694..2501794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2501695..2501794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1880.1prot_P-fluviatile_contig13.1880.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2500899..2501794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1880.1

>prot_P-fluviatile_contig13.1880.1 ID=prot_P-fluviatile_contig13.1880.1|Name=mRNA_P-fluviatile_contig13.1880.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=94bp
REWSLYQQLISPTTLPGLLPTHDFLEVIGGFDFKELFRFEKHHFRQLLVL
LELPQHVEISRGGFAKVRVPMELAFALTLWRLAAPTTLIRDRLF
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mRNA from alignment at P-fluviatile_contig13:2500899..2501794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1880.1 ID=mRNA_P-fluviatile_contig13.1880.1|Name=mRNA_P-fluviatile_contig13.1880.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=896bp|location=Sequence derived from alignment at P-fluviatile_contig13:2500899..2501794+ (Porterinema fluviatile SAG_2381)
AGGGAATGGAGTTTGTACCAGCAGCTCATCTCACCCACCACCCTACCGGG GCTTTTGCCCACTCACGACTTCCTCGAAGTCATCGGGGGCTTTGACTTCA AGGAGCTGTTCAGGTTCGAGAAGCATCACTTTCGGCAACTCCTTGTTCTT CTCGAGCTACCACAACACGTCGAGATTTCAAGGTACGAAACAGCAGTCTC AAATTTGTTCCTCTTGCAAGCAACGTACGGGGGAAGACGGGGGAAGGGAT TGGCCGCGAGACAGGAGTTATCGGGGGCTCACCACAACAACAACCACGGC ATTTTCGTAAAAAAGTGAAAAACAAGGGCGCGCGCTCAGAACTTGCTGCG GTGTGTGTCCAACAGGGAGAGGTGCTGCAGCTGCGATTGTTCGTTCCTTT GTGAGCAACAAGCTGCCGAAGAAGGTCCGTATACATGGTGCTGCTACGTA CCATATACTTGGTGCTGCTACGTACCACGTCGTGCTTTGAACATCGTAGA CTCTTTTCATGTGTGGGCTGTCGCTAAAGCCATGCGCAGTCTTTGTCGCG GGTGGTTCGCACATGATGTGCTCACATATATGGCGGTAGCCTTACTTGGG TGGGGCGGAACCCCCTTCGTGCGTTGGCTCTAAAAGCGGCACAAGAGCAC AAGCACGGCCACCTCGTAATAAAACAATCCTGATGTCCTCTCCTTCTTCC CATGTGCTGCCCGGTCGTCGCATCTGCGTCGTTCTATCTGCGTTGTTCTC CCTTTGCCCGCCCTCTCCCATCTCGCGAATTCGGGCATGGACGCAGGGGG GGGTTCGCGAAAGTGAGGGTGCCAATGGAGCTCGCCTTTGCTCTGACGCT GTGGAGGCTCGCCGCACCCACGACTTTGATTCGGGATCGATTATTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2500899..2501794+

>mRNA_P-fluviatile_contig13.1880.1 ID=mRNA_P-fluviatile_contig13.1880.1|Name=mRNA_P-fluviatile_contig13.1880.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig13:2500899..2501794+ (Porterinema fluviatile SAG_2381)
AGGGAATGGAGTTTGTACCAGCAGCTCATCTCACCCACCACCCTACCGGG
GCTTTTGCCCACTCACGACTTCCTCGAAGTCATCGGGGGCTTTGACTTCA
AGGAGCTGTTCAGGTTCGAGAAGCATCACTTTCGGCAACTCCTTGTTCTT
CTCGAGCTACCACAACACGTCGAGATTTCAAGAGGGAATGGAGTTTGTAC
CAGCAGCTCATCTCACCCACCACCCTACCGGGGCTTTTGCCCACTCACGA
CTTCCTCGAAGTCATCGGGGGCTTTGACTTCAAGGAGCTGTTCAGGTTCG
AGAAGCATCACTTTCGGCAACTCCTTGTTCTTCTCGAGCTACCACAACAC
GTCGAGATTTCAAGGGGGGGGTTCGCGAAAGTGAGGGTGCCAATGGAGCT
CGCCTTTGCTCTGACGCTGTGGAGGCTCGCCGCACCCACGACTTTGATTC
GGGATCGATTATTCGGGGGGGTTCGCGAAAGTGAGGGTGCCAATGGAGCT
CGCCTTTGCTCTGACGCTGTGGAGGCTCGCCGCACCCACGACTTTGATTC
GGGATCGATTATTC
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