mRNA_P-fluviatile_contig13.1865.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1865.1
Unique NamemRNA_P-fluviatile_contig13.1865.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2323082..2323645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.7434258-CDS-P-fluviatile_contig13:2323081..23235521622815537.7434258-CDS-P-fluviatile_contig13:2323081..2323552Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2323082..2323552 +
1693562174.0466852-CDS-P-fluviatile_contig13:2323081..23235521693562174.0466852-CDS-P-fluviatile_contig13:2323081..2323552Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2323082..2323552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.756406-UTR-P-fluviatile_contig13:2323552..23236451622815537.756406-UTR-P-fluviatile_contig13:2323552..2323645Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2323553..2323645 +
1693562174.0574229-UTR-P-fluviatile_contig13:2323552..23236451693562174.0574229-UTR-P-fluviatile_contig13:2323552..2323645Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2323553..2323645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1865.1prot_P-fluviatile_contig13.1865.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2323082..2323552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1865.1

>prot_P-fluviatile_contig13.1865.1 ID=prot_P-fluviatile_contig13.1865.1|Name=mRNA_P-fluviatile_contig13.1865.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=157bp
APGQQAIAQDSHQFSSRTLLVAFKKRYPPSLPGRVRFLTLTPPFRQARTR
LTLIACFWTPPAPDSNNITVKNAVDIKYTDAQPLSSKTQKYQVERDVSMS
NMPSPNNITSTNKVGMRTSALQEDGAERGNGVRYLSLPVLPKLGGTHEPI
NAPQRG*
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mRNA from alignment at P-fluviatile_contig13:2323082..2323645+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1865.1 ID=mRNA_P-fluviatile_contig13.1865.1|Name=mRNA_P-fluviatile_contig13.1865.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig13:2323082..2323645+ (Porterinema fluviatile SAG_2381)
GCGCCAGGACAACAAGCTATTGCCCAAGATTCCCACCAATTCTCAAGCCG
AACCCTCCTCGTCGCATTCAAAAAACGTTATCCTCCGAGCTTACCTGGAC
GGGTTCGTTTCTTAACACTCACGCCCCCCTTCCGTCAAGCAAGAACACGC
CTGACCCTGATCGCTTGCTTTTGGACTCCCCCCGCCCCCGACTCCAACAA
CATTACGGTCAAAAATGCTGTTGACATAAAATACACAGATGCCCAGCCCC
TAAGTTCGAAGACGCAAAAGTACCAGGTGGAGAGGGACGTCAGCATGTCG
AACATGCCGTCACCGAACAATATCACATCTACAAATAAGGTCGGTATGCG
CACGAGCGCCCTGCAAGAGGATGGGGCAGAAAGAGGGAATGGGGTTCGAT
ATCTCAGCCTTCCGGTTCTCCCAAAACTGGGGGGAACACACGAACCCATC
AACGCGCCACAAAGGGGATAAAAGGGAACACGACACACGCAGACAAACCC
CGCAACAAAATGGTGGCACGCGAACGCGTGGGCCAAGAAACATAAAATCG
CAGGCGTCTTGCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2323082..2323645+

>mRNA_P-fluviatile_contig13.1865.1 ID=mRNA_P-fluviatile_contig13.1865.1|Name=mRNA_P-fluviatile_contig13.1865.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=942bp|location=Sequence derived from alignment at P-fluviatile_contig13:2323082..2323645+ (Porterinema fluviatile SAG_2381)
GCGCCAGGACAACAAGCTATTGCCCAAGATTCCCACCAATTCTCAAGCCG
AACCCTCCTCGTCGCATTCAAAAAACGTTATCCTCCGAGCTTACCTGGAC
GGGTTCGTTTCTTAACACTCACGCCCCCCTTCCGTCAAGCAAGAACACGC
CTGACCCTGATCGCTTGCTTTTGGACTCCCCCCGCCCCCGACTCCAACAA
CATTACGGTCAAAAATGCTGTTGACATAAAATACACAGATGCCCAGCCCC
TAAGTTCGAAGACGCAAAAGTACCAGGTGGAGAGGGACGTCAGCATGTCG
AACATGCCGTCACCGAACAATATCACATCTACAAATAAGGTCGGTATGCG
CACGAGCGCCCTGCAAGAGGATGGGGCAGAAAGAGGGAATGGGGTTCGAT
ATCTCAGCCTTCCGGTTCTCCCAAAACTGGGGGGAACACACGAACCCATC
AACGCGCCACAAAGGGGATAAGCGCCAGGACAACAAGCTATTGCCCAAGA
TTCCCACCAATTCTCAAGCCGAACCCTCCTCGTCGCATTCAAAAAACGTT
ATCCTCCGAGCTTACCTGGACGGGTTCGTTTCTTAACACTCACGCCCCCC
TTCCGTCAAGCAAGAACACGCCTGACCCTGATCGCTTGCTTTTGGACTCC
CCCCGCCCCCGACTCCAACAACATTACGGTCAAAAATGCTGTTGACATAA
AATACACAGATGCCCAGCCCCTAAGTTCGAAGACGCAAAAGTACCAGGTG
GAGAGGGACGTCAGCATGTCGAACATGCCGTCACCGAACAATATCACATC
TACAAATAAGGTCGGTATGCGCACGAGCGCCCTGCAAGAGGATGGGGCAG
AAAGAGGGAATGGGGTTCGATATCTCAGCCTTCCGGTTCTCCCAAAACTG
GGGGGAACACACGAACCCATCAACGCGCCACAAAGGGGATAA
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