mRNA_P-fluviatile_contig13.1859.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1859.1
Unique NamemRNA_P-fluviatile_contig13.1859.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1859.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 5.440e-75
Identity = 146/245 (59.59%), Postives = 167/245 (68.16%), Query Frame = 1 
Query:    1 DAPPRDVESMKEEIAELQAGTTASLDRAIAAAEATNSVANHTNIQLAEQRHQMGKIEAEARGIDSRLRRTGYNLRYGLTWRGALTSPFRRNEPEAKNIS----TKHDISPVFKDDY---SDPTAAPRHGGSSSKSDGRGGSISPKTKKGGLFKGRATGEKAARPRAEP------PMIPDHXXXGFENQLDKLDGLLDGLNQQAQQIGAELKQQNAGIDALGGVVEPLRQETASQAKQIKRRFGVR 696
            D+ PRDV SMK EIAELQAGTTASLDRAIAAAEAT SV   T + L EQR QMG+I+AEAR ID  L+RTG+NL+YGLTWRGALT+PFRR             T  DISPVFKDD+   + P  AP HGGS+S +        P  KKGG  K  +  +KA   RAE         +P++   GFE QLD LD LLDGL  QA++IGAELKQQN GI+ LG  VEPLRQETA QAKQIKRRFGV+
Sbjct:   33 DSSPRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGGAPAHGGSTSST--------PSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI5.440e-7559.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2244351..2245052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Exons1
Model size702
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.0244691-UTR-P-fluviatile_contig13:2244350..22443771622815573.0244691-UTR-P-fluviatile_contig13:2244350..2244377Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2244351..2244377 +
1693562285.414134-UTR-P-fluviatile_contig13:2244350..22443771693562285.414134-UTR-P-fluviatile_contig13:2244350..2244377Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2244351..2244377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.0378306-CDS-P-fluviatile_contig13:2244377..22450521622815573.0378306-CDS-P-fluviatile_contig13:2244377..2245052Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2244378..2245052 +
1693562285.4215522-CDS-P-fluviatile_contig13:2244377..22450521693562285.4215522-CDS-P-fluviatile_contig13:2244377..2245052Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2244378..2245052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1859.1prot_P-fluviatile_contig13.1859.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2244378..2245052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1859.1

>prot_P-fluviatile_contig13.1859.1 ID=prot_P-fluviatile_contig13.1859.1|Name=mRNA_P-fluviatile_contig13.1859.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=225bp
MKEEIAELQAGTTASLDRAIAAAEATNSVANHTNIQLAEQRHQMGKIEAE
ARGIDSRLRRTGYNLRYGLTWRGALTSPFRRNEPEAKNISTKHDISPVFK
DDYSDPTAAPRHGGSSSKSDGRGGSISPKTKKGGLFKGRATGEKAARPRA
EPPMIPDHVPDGFENQLDKLDGLLDGLNQQAQQIGAELKQQNAGIDALGG
VVEPLRQETASQAKQIKRRFGVRG*
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mRNA from alignment at P-fluviatile_contig13:2244351..2245052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1859.1 ID=mRNA_P-fluviatile_contig13.1859.1|Name=mRNA_P-fluviatile_contig13.1859.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig13:2244351..2245052+ (Porterinema fluviatile SAG_2381)
GATGCTCCCCCTCGCGATGTTGAGTCCATGAAAGAGGAGATCGCGGAACT
CCAAGCCGGTACAACCGCTTCGCTGGACAGGGCGATCGCGGCGGCTGAAG
CAACAAACAGCGTCGCGAACCACACCAACATCCAACTGGCGGAGCAACGT
CACCAAATGGGCAAGATCGAGGCAGAGGCTCGGGGAATAGACAGCAGATT
GAGGCGAACGGGGTACAACCTCAGGTACGGCCTAACGTGGCGTGGCGCCC
TCACCTCGCCGTTCCGGCGAAACGAACCCGAAGCGAAGAACATATCAACC
AAGCATGACATCTCTCCGGTGTTCAAGGATGATTATTCCGACCCTACGGC
TGCTCCCCGCCACGGCGGCAGCAGCAGCAAAAGCGACGGCCGCGGCGGAA
GCATCAGCCCGAAGACGAAGAAGGGGGGATTGTTCAAAGGGCGGGCGACG
GGGGAGAAGGCAGCACGGCCGCGGGCTGAGCCGCCTATGATCCCCGACCA
TGTCCCCGACGGATTTGAGAATCAGCTCGACAAGCTCGACGGCCTTTTGG
ATGGGTTGAATCAGCAGGCGCAGCAGATTGGGGCGGAGCTCAAACAGCAG
AACGCCGGAATCGACGCTCTGGGAGGGGTGGTGGAGCCGCTGAGACAGGA
GACGGCGTCCCAGGCGAAGCAGATTAAACGTAGGTTTGGGGTCAGAGGTT
GA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2244351..2245052+

>mRNA_P-fluviatile_contig13.1859.1 ID=mRNA_P-fluviatile_contig13.1859.1|Name=mRNA_P-fluviatile_contig13.1859.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1350bp|location=Sequence derived from alignment at P-fluviatile_contig13:2244351..2245052+ (Porterinema fluviatile SAG_2381)
ATGAAAGAGGAGATCGCGGAACTCCAAGCCGGTACAACCGCTTCGCTGGA
CAGGGCGATCGCGGCGGCTGAAGCAACAAACAGCGTCGCGAACCACACCA
ACATCCAACTGGCGGAGCAACGTCACCAAATGGGCAAGATCGAGGCAGAG
GCTCGGGGAATAGACAGCAGATTGAGGCGAACGGGGTACAACCTCAGGTA
CGGCCTAACGTGGCGTGGCGCCCTCACCTCGCCGTTCCGGCGAAACGAAC
CCGAAGCGAAGAACATATCAACCAAGCATGACATCTCTCCGGTGTTCAAG
GATGATTATTCCGACCCTACGGCTGCTCCCCGCCACGGCGGCAGCAGCAG
CAAAAGCGACGGCCGCGGCGGAAGCATCAGCCCGAAGACGAAGAAGGGGG
GATTGTTCAAAGGGCGGGCGACGGGGGAGAAGGCAGCACGGCCGCGGGCT
GAGCCGCCTATGATCCCCGACCATGTCCCCGACGGATTTGAGAATCAGCT
CGACAAGCTCGACGGCCTTTTGGATGGGTTGAATCAGCAGGCGCAGCAGA
TTGGGGCGGAGCTCAAACAGCAGAACGCCGGAATCGACGCTCTGGGAGGG
GTGGTGGAGCCGCTGAGACAGGAGACGGCGTCCCAGGCGAAGCAGATTAA
ACGTAGGTTTGGGGTCAGAGGTTGAATGAAAGAGGAGATCGCGGAACTCC
AAGCCGGTACAACCGCTTCGCTGGACAGGGCGATCGCGGCGGCTGAAGCA
ACAAACAGCGTCGCGAACCACACCAACATCCAACTGGCGGAGCAACGTCA
CCAAATGGGCAAGATCGAGGCAGAGGCTCGGGGAATAGACAGCAGATTGA
GGCGAACGGGGTACAACCTCAGGTACGGCCTAACGTGGCGTGGCGCCCTC
ACCTCGCCGTTCCGGCGAAACGAACCCGAAGCGAAGAACATATCAACCAA
GCATGACATCTCTCCGGTGTTCAAGGATGATTATTCCGACCCTACGGCTG
CTCCCCGCCACGGCGGCAGCAGCAGCAAAAGCGACGGCCGCGGCGGAAGC
ATCAGCCCGAAGACGAAGAAGGGGGGATTGTTCAAAGGGCGGGCGACGGG
GGAGAAGGCAGCACGGCCGCGGGCTGAGCCGCCTATGATCCCCGACCATG
TCCCCGACGGATTTGAGAATCAGCTCGACAAGCTCGACGGCCTTTTGGAT
GGGTTGAATCAGCAGGCGCAGCAGATTGGGGCGGAGCTCAAACAGCAGAA
CGCCGGAATCGACGCTCTGGGAGGGGTGGTGGAGCCGCTGAGACAGGAGA
CGGCGTCCCAGGCGAAGCAGATTAAACGTAGGTTTGGGGTCAGAGGTTGA
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