mRNA_P-fluviatile_contig13.1857.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1857.1
Unique NamemRNA_P-fluviatile_contig13.1857.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2236858..2237340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1857.1prot_P-fluviatile_contig13.1857.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2236880..2237230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6770957-UTR-P-fluviatile_contig13:2236857..22368791622815537.6770957-UTR-P-fluviatile_contig13:2236857..2236879Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2236858..2236879 +
1693562174.0188484-UTR-P-fluviatile_contig13:2236857..22368791693562174.0188484-UTR-P-fluviatile_contig13:2236857..2236879Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2236858..2236879 +
1622815537.7035255-UTR-P-fluviatile_contig13:2237230..22373401622815537.7035255-UTR-P-fluviatile_contig13:2237230..2237340Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2237231..2237340 +
1693562174.0369766-UTR-P-fluviatile_contig13:2237230..22373401693562174.0369766-UTR-P-fluviatile_contig13:2237230..2237340Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2237231..2237340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6931558-CDS-P-fluviatile_contig13:2236879..22372301622815537.6931558-CDS-P-fluviatile_contig13:2236879..2237230Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2236880..2237230 +
1693562174.0271513-CDS-P-fluviatile_contig13:2236879..22372301693562174.0271513-CDS-P-fluviatile_contig13:2236879..2237230Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2236880..2237230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1857.1

>prot_P-fluviatile_contig13.1857.1 ID=prot_P-fluviatile_contig13.1857.1|Name=mRNA_P-fluviatile_contig13.1857.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MMDAKTQTTQQTKKTRKSRSGQNTKMHEVQTHRAECRVHVSKSKTIEFRH
GGNYRTEACFTVLSLFCLSAPWALNCPCFGRRVANNLECACVHQHTAREE
RRSHGGARTPEPLPYA*
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mRNA from alignment at P-fluviatile_contig13:2236858..2237340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1857.1 ID=mRNA_P-fluviatile_contig13.1857.1|Name=mRNA_P-fluviatile_contig13.1857.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=483bp|location=Sequence derived from alignment at P-fluviatile_contig13:2236858..2237340+ (Porterinema fluviatile SAG_2381)
CACCAACGCTGCACACGATAAAATGATGGACGCAAAGACGCAAACGACAC
AACAAACAAAAAAAACACGAAAGAGTCGGTCAGGGCAGAACACAAAAATG
CACGAAGTGCAGACTCACCGCGCGGAGTGCAGGGTGCATGTCAGTAAATC
GAAAACTATTGAATTCCGTCACGGTGGAAATTACCGCACGGAGGCGTGTT
TCACTGTTTTGAGCCTGTTTTGCCTTTCAGCTCCTTGGGCACTAAACTGT
CCCTGCTTCGGGCGGCGTGTTGCGAACAACCTCGAGTGCGCGTGTGTGCA
CCAGCATACTGCGCGTGAGGAGCGCCGGTCACATGGAGGAGCACGCACAC
CCGAGCCGCTTCCGTATGCTTGATGAGAAACGAGAGCGGAAGCACGTACT
TGTAGGAACGGCTCATGATGTCGTTGATCTCGTTCATGTCCTCCATCATG
TCGGCCATGTCGTCGGTCAAGTCCTCCACCTTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2236858..2237340+

>mRNA_P-fluviatile_contig13.1857.1 ID=mRNA_P-fluviatile_contig13.1857.1|Name=mRNA_P-fluviatile_contig13.1857.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig13:2236858..2237340+ (Porterinema fluviatile SAG_2381)
ATGATGGACGCAAAGACGCAAACGACACAACAAACAAAAAAAACACGAAA
GAGTCGGTCAGGGCAGAACACAAAAATGCACGAAGTGCAGACTCACCGCG
CGGAGTGCAGGGTGCATGTCAGTAAATCGAAAACTATTGAATTCCGTCAC
GGTGGAAATTACCGCACGGAGGCGTGTTTCACTGTTTTGAGCCTGTTTTG
CCTTTCAGCTCCTTGGGCACTAAACTGTCCCTGCTTCGGGCGGCGTGTTG
CGAACAACCTCGAGTGCGCGTGTGTGCACCAGCATACTGCGCGTGAGGAG
CGCCGGTCACATGGAGGAGCACGCACACCCGAGCCGCTTCCGTATGCTTG
AATGATGGACGCAAAGACGCAAACGACACAACAAACAAAAAAAACACGAA
AGAGTCGGTCAGGGCAGAACACAAAAATGCACGAAGTGCAGACTCACCGC
GCGGAGTGCAGGGTGCATGTCAGTAAATCGAAAACTATTGAATTCCGTCA
CGGTGGAAATTACCGCACGGAGGCGTGTTTCACTGTTTTGAGCCTGTTTT
GCCTTTCAGCTCCTTGGGCACTAAACTGTCCCTGCTTCGGGCGGCGTGTT
GCGAACAACCTCGAGTGCGCGTGTGTGCACCAGCATACTGCGCGTGAGGA
GCGCCGGTCACATGGAGGAGCACGCACACCCGAGCCGCTTCCGTATGCTT
GA
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