mRNA_P-fluviatile_contig13.1840.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1840.1
Unique NamemRNA_P-fluviatile_contig13.1840.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1840.1 vs. uniprot
Match: A0A6H5KUM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 3.660e-61
Identity = 130/233 (55.79%), Postives = 157/233 (67.38%), Query Frame = 1 
Query:   16 IRAQIEAHWCALDALVDSQSGGNEVIIRALDVFAAGARGAFTADREPATAATDAALALSAPNLFDS-QHDDTRVALLGSLPRGITNADDTDDVARRAYFRAEEALVLXXXXXXXXXXXXXXXXXXXXXARVCIRSSYNTDEVVSREARKVVRARASLQALSRGDSGCAMSPVDMVRAMAGLLRMHQSELEMQETVVFDLGYDTPGETITAYREALGLRPFLDDRYLSEIHEVR 711
            +RAQIE HW   D+L + QS GNE IIRA+DVF  GARGAF A++E   A        +AP++F + Q +    +                   RRAY RAEE    XXXXXXXXXXXXX        AR CI S YNTD+V SRE R+ VR+RASLQAL RGDSGCAM+PV+M RAMAGLLRMHQSELEMQE++V+ LGY+T  E+IT YREALG+RP+LDD+Y S+  E+R
Sbjct:    7 MRAQIEGHWRDFDSLAEMQSRGNEAIIRAIDVFE-GARGAFIAEQEARGAGXXX---XAAPSMFGAHQWEGGWASGXXXXXXXXXXXXXXXXXXRRAYVRAEEXXXXXXXXXXXXXXXXXQMAEEVERARACINSFYNTDDVASREERREVRSRASLQALDRGDSGCAMTPVEMARAMAGLLRMHQSELEMQESIVYGLGYETSAESITGYREALGMRPYLDDQYRSQAQEIR 235
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BLAST of mRNA_P-fluviatile_contig13.1840.1 vs. uniprot
Match: D8LS45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS45_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 8.800e-19
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  517 MSPVDMVRAMAGLLRMHQSELEMQ----------------------ETVVFDLGYDTPGETITAYREALGLRPFLDDRYLSEIHEVR 711
            M+PVDM RAMAGLLRMHQSELEMQ                      E++V+ LGY+TP E IT+YREALG+RP LDD++ S+  E+R
Sbjct:    1 MTPVDMSRAMAGLLRMHQSELEMQSRPSEEERERLQTXXXXXITTKESIVYGLGYETPAELITSYREALGMRPHLDDQHRSQAQEIR 87
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BLAST of mRNA_P-fluviatile_contig13.1840.1 vs. uniprot
Match: D8LS46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS46_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.140e-8
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   16 IRAQIEAHWCALDALVDSQSGGNEVIIRALDVFAAGARGAFTADREPATAATDAALALSAPNLF 207
            +RAQIE HW   D+L + QSGGNE IIRA+DVF  GARGAF A++E       AA    AP++F
Sbjct:    7 MRAQIEGHWRNFDSLAEMQSGGNEAIIRAIDVFE-GARGAFIAEQEARGGGAGAA----APSMF 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUM0_9PHAE3.660e-6155.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS45_ECTSI8.800e-1952.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS46_ECTSI4.140e-854.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2109847..2112512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004850.1
Hectar predicted targeting categoryother localisation
Exons4
Model size711
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1840.1prot_P-fluviatile_contig13.1840.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2109847..2112512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.734758-CDS-P-fluviatile_contig13:2109846..21099691622815570.734758-CDS-P-fluviatile_contig13:2109846..2109969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2109847..2109969 -
1693562281.0990176-CDS-P-fluviatile_contig13:2109846..21099691693562281.0990176-CDS-P-fluviatile_contig13:2109846..2109969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2109847..2109969 -
1622815570.7463558-CDS-P-fluviatile_contig13:2110287..21104631622815570.7463558-CDS-P-fluviatile_contig13:2110287..2110463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2110288..2110463 -
1693562281.1108322-CDS-P-fluviatile_contig13:2110287..21104631693562281.1108322-CDS-P-fluviatile_contig13:2110287..2110463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2110288..2110463 -
1622815570.7569575-CDS-P-fluviatile_contig13:2111430..21117241622815570.7569575-CDS-P-fluviatile_contig13:2111430..2111724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2111431..2111724 -
1693562281.387512-CDS-P-fluviatile_contig13:2111430..21117241693562281.387512-CDS-P-fluviatile_contig13:2111430..2111724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2111431..2111724 -
1622815570.7670298-CDS-P-fluviatile_contig13:2112394..21125121622815570.7670298-CDS-P-fluviatile_contig13:2112394..2112512Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2112395..2112512 -
1693562281.4027925-CDS-P-fluviatile_contig13:2112394..21125121693562281.4027925-CDS-P-fluviatile_contig13:2112394..2112512Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2112395..2112512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1840.1

>prot_P-fluviatile_contig13.1840.1 ID=prot_P-fluviatile_contig13.1840.1|Name=mRNA_P-fluviatile_contig13.1840.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=237bp
MDQGRIRAQIEAHWCALDALVDSQSGGNEVIIRALDVFAAGARGAFTADR
EPATAATDAALALSAPNLFDSQHDDTRVALLGSLPRGITNADDTDDVARR
AYFRAEEALVLAREQLARSEATLQLMREEIERARVCIRSSYNTDEVVSRE
ARKVVRARASLQALSRGDSGCAMSPVDMVRAMAGLLRMHQSELEMQETVV
FDLGYDTPGETITAYREALGLRPFLDDRYLSEIHEVR
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mRNA from alignment at P-fluviatile_contig13:2109847..2112512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1840.1 ID=mRNA_P-fluviatile_contig13.1840.1|Name=mRNA_P-fluviatile_contig13.1840.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2666bp|location=Sequence derived from alignment at P-fluviatile_contig13:2109847..2112512- (Porterinema fluviatile SAG_2381)
ATGGATCAAGGAAGAATCAGAGCTCAGATTGAAGCGCACTGGTGCGCCCT
CGATGCCTTGGTGGACAGCCAAAGCGGAGGGAATGAAGTGATCATCCGCG
CTCTGGATGTATTTGCAGGTGTGGGGGAGATAATGATTTGTGATTTGTGA
GTCCTTGACTTCTGTGTGAAACAATCTTCTTGAGGGAGAGGGCGAGCTGC
TGACAACTCACCGTGCGCATGCCTCCGTTCACGTCGTTGTGCTACTGCGT
CATTTTGAGCATCGACCGCGCTGTACCTGAGGCGGAGTAATTATGTCAGT
TTTGACAAATTTGAAAGTGGTCGTATACCATATATGACACAAGATAACAC
ACCCCCTGGACCGATTTTCAATGCTCGAATACTCCACGACGAAGAGGATG
CATAAACGAAATGATACATTTTCGAAAAGCTCTCGACGAGACGGTTTCAA
CGCCGCCATTTTCGGCGCTGTGACTGTTCCTGCAGTTGAGAAATCGAGCT
TCAAAAATCGGTTAAGGGGGTGTGTTATCTTGTGTCCTGTACACACAGAT
GCCCAATCATGAAAATGCCCGTTGAAAACCCCATGCGAGGGTGCGGCGGG
CAGCGAAAGGCGAGGCGCCCGGGAAGGAGAGATATCGGAACTCGTTACAG
CACCACACGAGGCCACCGCCCGGGTGATCTTGTACCCACCGCACTTGCGC
GTTTCCTCGTGCTCTCGCGAGCTCGGGCGTTGTCATGTTTCATTTTGTTT
GGGGAACCTTTCTCGATCGCTTTTCGCGGCGCCCCAAGCAGGCGCCCGTG
GAGCCTTCACTGCAGATCGTGAGCCGGCGACCGCTGCTACAGATGCAGCA
TTAGCACTATCGGCCCCGAACCTGTTCGACAGTCAGCATGATGATACACG
GGTAGCATTGCTTGGGTCCCTTCCCCGCGGAATCACAAACGCTGATGACA
CCGACGACGTGGCGCGCAGAGCGTACTTCAGGGCCGAGGAGGCCTTAGTC
CTTGCGCGGGAACAGCTGGCACGCAGCGAGGCGACTCTGCAGCTCATGAG
AGAGGAGATCGAGCGGGCAAGGGTGTGCATAAGTGAGAGAGATAAGAGCG
AGGAATGGATAACGGTGGGTTATTGGAAGTATGCCTTTTAGCACATTCAA
TTTCGTGAAAATAGATGGCGATCAAGGCTTTCGCATGGCCCACGAACGAG
GGGCCGAGCTTTTCGAGGATGCAATCAAGAACAGCAGGTTCAGCCAAAGA
TTCGTTGTGCGTTTTTTCCGTGCAGCCCGGGTATGATACTCGCAGCATTC
CTCATGAGTGCTTGAGAATTGATTGCCCCTCTTTGGCAGCAGTTTAGTGA
GGGCCCCTTCACGAGACGAAGGGAAGGCGGACGACACAACATCCTGAGAC
CTACAGTGCCCAGGCTTTGTGAGCAATGGAGCGATGCGTAGCAAAATGCA
GTATTAGACAACTACACACGTCTTGTGCGGCCGAGTGTTGCGCGTTGTAC
CTGGTAAAATAGTTGCCGATTGGAGTCATCGATTCCCTCGACGAGTTTAC
CTTCGCTCTGCTTCGTTGGTCGTGTCAGATCTGATTGCGAACTGATGCAC
ACAGCACCCAAAGCAGCTGCCCCGTCCGGTTCGGACCACTGCCGTGTTTG
TCGAGTTCACTTCCGGCATTTTTCACCATTTTTCATCGCCGTTTTTTCTT
TGGGTTTAGTTTCTCACCACTCGCGTAGCCCCGCCGATTATGGCTTCAAG
GCTTGCCCCGGGATGCGTTGTTGATCTCATCCCTGAAAAACGTGCACTTG
GCACCTTTCCGTGTGAAAGCACGTAAACTAATGAACGGCGACTCGCTCCC
GGAGAAGTAGGCGTGAACGCCGAGTGAACTCCACGTCACACATCGCGTGT
CAATTACTCGATGTAGAACTCCTGTTTGCCGATGGATTGGGTGCAGTGTT
GTAATTTGGATTTCCCGGCCGTGCAAGTCGCATGCCTTCCACGTCCCGGT
GATGGTTGTGTCCTCCCTCACAAGCGCGGCAACAACAAAACTATTTCAGG
ATCGAGCTATAATACGGATGAGGTGGTAAGCCGAGAAGCACGTAAAGTCG
TGCGGGCGAGGGCATCCCTCCAGGCATTGAGCCGCGGCGATTCTGGCTGC
GCCATGTCGCCGGTGGACATGGTGAGGGCGATGGCAGGGCTACTCCGAAT
GCACCAGAGCGAGCTGGAGATGCAGGTACATACCGTGGATTGTTTGGGGG
TTGAGCCTTGTCGGATTTTGACTGGGCGCCTTCGGTACATCACTAAAAAC
GGGATGCAGTGTGCTTAGCTCCAAGGGGAATGCTCTGTTGCTTGAGGCAC
GAAAGTTGCGCAGTCGCAGACCATTGTCCGTGACCAGATCGCTCCTTAGG
AAGATCGCAAGCCCTTGGTCGGTAAGATGCTCGGTACACAGTGTTGTAGG
CCGGCATTCTCTCAATCGCTGCACGATTCGCAAAACCGGAGTCGAACAAA
AGTTTTGATGGTGATCATCGCCGCTGCTTGTCCTCTGCCATAGGAAACCG
TCGTCTTCGATCTCGGGTATGACACTCCCGGAGAAACTATCACGGCTTAC
CGAGAGGCTCTGGGTCTCCGTCCCTTTCTGGACGACCGTTACCTGTCGGA
AATACATGAGGTGAGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2109847..2112512-

>mRNA_P-fluviatile_contig13.1840.1 ID=mRNA_P-fluviatile_contig13.1840.1|Name=mRNA_P-fluviatile_contig13.1840.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1422bp|location=Sequence derived from alignment at P-fluviatile_contig13:2109847..2112512- (Porterinema fluviatile SAG_2381)
ATGGATCAAGGAAGAATCAGAGCTCAGATTGAAGCGCACTGGTGCGCCCT
CGATGCCTTGGTGGACAGCCAAAGCGGAGGGAATGAAGTGATCATCCGCG
CTCTGGATGTATTTGCAGATGGATCAAGGAAGAATCAGAGCTCAGATTGA
AGCGCACTGGTGCGCCCTCGATGCCTTGGTGGACAGCCAAAGCGGAGGGA
ATGAAGTGATCATCCGCGCTCTGGATGTATTTGCAGCAGGCGCCCGTGGA
GCCTTCACTGCAGATCGTGAGCCGGCGACCGCTGCTACAGATGCAGCATT
AGCACTATCGGCCCCGAACCTGTTCGACAGTCAGCATGATGATACACGGG
TAGCATTGCTTGGGTCCCTTCCCCGCGGAATCACAAACGCTGATGACACC
GACGACGTGGCGCGCAGAGCGTACTTCAGGGCCGAGGAGGCCTTAGTCCT
TGCGCGGGAACAGCTGGCACGCAGCGAGGCGACTCTGCAGCTCATGAGAG
AGGAGATCGAGCGGGCAAGGGTGTGCATAACAGGCGCCCGTGGAGCCTTC
ACTGCAGATCGTGAGCCGGCGACCGCTGCTACAGATGCAGCATTAGCACT
ATCGGCCCCGAACCTGTTCGACAGTCAGCATGATGATACACGGGTAGCAT
TGCTTGGGTCCCTTCCCCGCGGAATCACAAACGCTGATGACACCGACGAC
GTGGCGCGCAGAGCGTACTTCAGGGCCGAGGAGGCCTTAGTCCTTGCGCG
GGAACAGCTGGCACGCAGCGAGGCGACTCTGCAGCTCATGAGAGAGGAGA
TCGAGCGGGCAAGGGTGTGCATAAGATCGAGCTATAATACGGATGAGGTG
GTAAGCCGAGAAGCACGTAAAGTCGTGCGGGCGAGGGCATCCCTCCAGGC
ATTGAGCCGCGGCGATTCTGGCTGCGCCATGTCGCCGGTGGACATGGTGA
GGGCGATGGCAGGGCTACTCCGAATGCACCAGAGCGAGCTGGAGATGCAG
GATCGAGCTATAATACGGATGAGGTGGTAAGCCGAGAAGCACGTAAAGTC
GTGCGGGCGAGGGCATCCCTCCAGGCATTGAGCCGCGGCGATTCTGGCTG
CGCCATGTCGCCGGTGGACATGGTGAGGGCGATGGCAGGGCTACTCCGAA
TGCACCAGAGCGAGCTGGAGATGCAGGAAACCGTCGTCTTCGATCTCGGG
TATGACACTCCCGGAGAAACTATCACGGCTTACCGAGAGGCTCTGGGTCT
CCGTCCCTTTCTGGACGACCGTTACCTGTCGGAAATACATGAGGTGAGAG
AAACCGTCGTCTTCGATCTCGGGTATGACACTCCCGGAGAAACTATCACG
GCTTACCGAGAGGCTCTGGGTCTCCGTCCCTTTCTGGACGACCGTTACCT
GTCGGAAATACATGAGGTGAGA
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