mRNA_P-fluviatile_contig13.1835.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1835.1
Unique NamemRNA_P-fluviatile_contig13.1835.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2079823..2080571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size750
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6275873-UTR-P-fluviatile_contig13:2079822..20799561622815537.6275873-UTR-P-fluviatile_contig13:2079822..2079956Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2079823..2079956 +
1693562174.0033445-UTR-P-fluviatile_contig13:2079822..20799561693562174.0033445-UTR-P-fluviatile_contig13:2079822..2079956Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2079823..2079956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6385634-CDS-P-fluviatile_contig13:2079956..20805711622815537.6385634-CDS-P-fluviatile_contig13:2079956..2080571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2079957..2080571 +
1693562174.010865-CDS-P-fluviatile_contig13:2079956..20805711693562174.010865-CDS-P-fluviatile_contig13:2079956..2080571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2079957..2080571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1835.1prot_P-fluviatile_contig13.1835.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2079957..2080571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1835.1

>prot_P-fluviatile_contig13.1835.1 ID=prot_P-fluviatile_contig13.1835.1|Name=mRNA_P-fluviatile_contig13.1835.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=205bp
MERHIDAGSSPGTHVYPSNDSTAKVRRRCRPRCPSFTTAVTLGTVLLGSA
TASSGSRNPPPPPPSLGSHQYNSNNRRQHQDRWVGWTPPPPPPGPPPDPT
AVGGTGEGAGMAWGEAGAMGSSVQQGGAASPESGKVCDDGSSSLATGMRM
GHSIQQQQRHHGESAADNGARETQQQAHERMMMAGQQQQGRQGPFPPTTN
PNQQQ
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mRNA from alignment at P-fluviatile_contig13:2079823..2080571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1835.1 ID=mRNA_P-fluviatile_contig13.1835.1|Name=mRNA_P-fluviatile_contig13.1835.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=749bp|location=Sequence derived from alignment at P-fluviatile_contig13:2079823..2080571+ (Porterinema fluviatile SAG_2381)
AAGTGATAACGACCTACACAGCCCACCGCTCATCACGGGTGCACGTGAAC
GGACGCGATCTGCACTTGCCTCGTGCAGTGGATTTTATTGGCAGCTACTT
ATAACAAGCGGCTGGGGCCAAAGAAAGAGGGCGAATGGAGCGGCATATTG
ATGCTGGGTCCTCTCCAGGGACACACGTGTACCCCAGCAACGACAGCACC
GCGAAAGTTCGCCGCCGCTGCCGTCCACGTTGCCCATCCTTCACAACAGC
GGTAACTTTGGGGACTGTGCTGCTCGGTTCCGCCACAGCGTCCTCTGGGT
CGAGGAACCCACCCCCTCCTCCGCCTTCATTGGGAAGCCACCAATACAAC
AGCAATAACCGTAGGCAACATCAGGATCGATGGGTCGGATGGACTCCTCC
TCCGCCCCCTCCCGGACCACCCCCGGATCCTACAGCAGTCGGCGGGACCG
GGGAGGGCGCAGGAATGGCATGGGGGGAAGCAGGAGCAATGGGCTCCTCT
GTGCAGCAGGGAGGTGCAGCGAGCCCGGAGAGCGGGAAGGTTTGCGACGA
CGGCAGCAGCAGCTTGGCTACAGGCATGCGGATGGGGCACAGCATTCAAC
AACAGCAGCGCCACCACGGCGAAAGTGCGGCGGATAACGGGGCGAGGGAG
ACTCAGCAGCAGGCACACGAGCGCATGATGATGGCGGGGCAACAACAGCA
AGGTCGGCAGGGACCTTTTCCACCAACGACAAATCCAAATCAGCAGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2079823..2080571+

>mRNA_P-fluviatile_contig13.1835.1 ID=mRNA_P-fluviatile_contig13.1835.1|Name=mRNA_P-fluviatile_contig13.1835.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1230bp|location=Sequence derived from alignment at P-fluviatile_contig13:2079823..2080571+ (Porterinema fluviatile SAG_2381)
ATGGAGCGGCATATTGATGCTGGGTCCTCTCCAGGGACACACGTGTACCC
CAGCAACGACAGCACCGCGAAAGTTCGCCGCCGCTGCCGTCCACGTTGCC
CATCCTTCACAACAGCGGTAACTTTGGGGACTGTGCTGCTCGGTTCCGCC
ACAGCGTCCTCTGGGTCGAGGAACCCACCCCCTCCTCCGCCTTCATTGGG
AAGCCACCAATACAACAGCAATAACCGTAGGCAACATCAGGATCGATGGG
TCGGATGGACTCCTCCTCCGCCCCCTCCCGGACCACCCCCGGATCCTACA
GCAGTCGGCGGGACCGGGGAGGGCGCAGGAATGGCATGGGGGGAAGCAGG
AGCAATGGGCTCCTCTGTGCAGCAGGGAGGTGCAGCGAGCCCGGAGAGCG
GGAAGGTTTGCGACGACGGCAGCAGCAGCTTGGCTACAGGCATGCGGATG
GGGCACAGCATTCAACAACAGCAGCGCCACCACGGCGAAAGTGCGGCGGA
TAACGGGGCGAGGGAGACTCAGCAGCAGGCACACGAGCGCATGATGATGG
CGGGGCAACAACAGCAAGGTCGGCAGGGACCTTTTCCACCAACGACAAAT
CCAAATCAGCAGCAGATGGAGCGGCATATTGATGCTGGGTCCTCTCCAGG
GACACACGTGTACCCCAGCAACGACAGCACCGCGAAAGTTCGCCGCCGCT
GCCGTCCACGTTGCCCATCCTTCACAACAGCGGTAACTTTGGGGACTGTG
CTGCTCGGTTCCGCCACAGCGTCCTCTGGGTCGAGGAACCCACCCCCTCC
TCCGCCTTCATTGGGAAGCCACCAATACAACAGCAATAACCGTAGGCAAC
ATCAGGATCGATGGGTCGGATGGACTCCTCCTCCGCCCCCTCCCGGACCA
CCCCCGGATCCTACAGCAGTCGGCGGGACCGGGGAGGGCGCAGGAATGGC
ATGGGGGGAAGCAGGAGCAATGGGCTCCTCTGTGCAGCAGGGAGGTGCAG
CGAGCCCGGAGAGCGGGAAGGTTTGCGACGACGGCAGCAGCAGCTTGGCT
ACAGGCATGCGGATGGGGCACAGCATTCAACAACAGCAGCGCCACCACGG
CGAAAGTGCGGCGGATAACGGGGCGAGGGAGACTCAGCAGCAGGCACACG
AGCGCATGATGATGGCGGGGCAACAACAGCAAGGTCGGCAGGGACCTTTT
CCACCAACGACAAATCCAAATCAGCAGCAG
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