mRNA_P-fluviatile_contig13.1832.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1832.1
Unique NamemRNA_P-fluviatile_contig13.1832.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1832.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.460e-11
Identity = 48/131 (36.64%), Postives = 62/131 (47.33%), Query Frame = 3 
Query:    3 QLYVALSRAQNRESIMCLLPPSSVVDGIPHTENIVYAPFIEAATGVITQPPPNIPPYRLPXXXXXXXXXXXXXQEP--------------------------HWLYRNEIGDGACGFRAIARHVLGDPELH 317
            QLYVALSR+QNR SIMCLLP + ++DGIP+T+NIVY P I+AAT     P  +I                   +E                            W   +EIGDGAC  R ++R++ G P  H
Sbjct:  410 QLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVYPPLIQAATFGDYHPGNSI---SGSVGGDKDTQSCDGDEESVDDADKDDXXXXXXXXXXXANADSLGSWTVLDEIGDGACMLRCVSRYIYGSPITH 537
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BLAST of mRNA_P-fluviatile_contig13.1832.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-10
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:    3 QLYVALSRAQNRESIMCLLPPSSVVDGIPHTENIVYAPFIEAATG 137
            QLYVAL+RAQ R ++M LLP S VVDG+P+TEN+VYAPF EAATG
Sbjct:  273 QLYVALTRAQKRSTVMVLLPHSQVVDGVPYTENVVYAPFTEAATG 317
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BLAST of mRNA_P-fluviatile_contig13.1832.1 vs. uniprot
Match: A0A0M0JD51_9EUKA (Otu domain-containing protein 3-like protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JD51_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 8.960e-6
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 3 
Query:  222 QEPHWLYRNEIGDGACGFRAIARHVLGDPELHLQIR*QVVQYMSDNRAQDELGINEGINIEYLYASGVAPSTYHS*MSSPHTYM-GESEIAAARAIYGKQIHVH-----LTESTLPLPEFATTDEIHL*YTEACRHYDTYELILPDP 644
            Q   W   + +GDG C FRA+A+ V GD +LH + R + ++YM ++R + E  ++   +I Y        +T     S   TY+ GE E+ AA   +  +I V+        +  PL     T ++ + + +A +HY   E + P P
Sbjct:  251 QADGWQRVDVVGDGNCFFRALAKQVDGDEQLHGRARQETIRYMREHREEFEQFVHIYSDINYKDFDSYVDNT-----SIEGTYVEGEIELMAAAKTFNVRIRVYGRSEDHDRTFAPLIRNDETRDVCMAHDQAAQHYFVLERMGPAP 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9C5_9PHAE1.460e-1136.64ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0V2_9PHAE1.080e-1073.33ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A0M0JD51_9EUKA8.960e-628.57Otu domain-containing protein 3-like protein (Frag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2045353..2046260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size908
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1832.1prot_P-fluviatile_contig13.1832.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2045400..2045684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5374374-UTR-P-fluviatile_contig13:2045352..20453991622815569.5374374-UTR-P-fluviatile_contig13:2045352..2045399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2045353..2045399 +
1693562280.0566375-UTR-P-fluviatile_contig13:2045352..20453991693562280.0566375-UTR-P-fluviatile_contig13:2045352..2045399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2045353..2045399 +
1622815569.5651648-UTR-P-fluviatile_contig13:2045684..20462601622815569.5651648-UTR-P-fluviatile_contig13:2045684..2046260Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2045685..2046260 +
1693562280.072784-UTR-P-fluviatile_contig13:2045684..20462601693562280.072784-UTR-P-fluviatile_contig13:2045684..2046260Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2045685..2046260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5514023-CDS-P-fluviatile_contig13:2045399..20456841622815569.5514023-CDS-P-fluviatile_contig13:2045399..2045684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2045400..2045684 +
1693562280.0650601-CDS-P-fluviatile_contig13:2045399..20456841693562280.0650601-CDS-P-fluviatile_contig13:2045399..2045684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2045400..2045684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1832.1

>prot_P-fluviatile_contig13.1832.1 ID=prot_P-fluviatile_contig13.1832.1|Name=mRNA_P-fluviatile_contig13.1832.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=95bp
MCLLPPSSVVDGIPHTENIVYAPFIEAATGVITQPPPNIPPYRLPPPGAP
PLPPPPPPQEPHWLYRNEIGDGACGFRAIARHVLGDPELHLQIR*
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mRNA from alignment at P-fluviatile_contig13:2045353..2046260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1832.1 ID=mRNA_P-fluviatile_contig13.1832.1|Name=mRNA_P-fluviatile_contig13.1832.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=908bp|location=Sequence derived from alignment at P-fluviatile_contig13:2045353..2046260+ (Porterinema fluviatile SAG_2381)
GCCAGCTGTACGTTGCTTTAAGTCGTGCTCAAAACAGAGAATCAATAATG
TGTCTTCTTCCACCATCGAGCGTCGTCGACGGCATACCTCACACCGAAAA
CATTGTATACGCTCCTTTTATTGAAGCTGCCACAGGCGTTATTACACAGC
CTCCACCAAACATTCCTCCTTACCGTCTTCCTCCACCAGGAGCTCCACCT
CTACCTCCTCCTCCACCTCCGCAAGAACCCCATTGGCTTTACAGAAATGA
AATTGGTGACGGTGCATGTGGTTTCAGAGCTATTGCTAGACATGTTCTGG
GAGATCCCGAACTCCACCTTCAAATCCGTTAGCAGGTAGTTCAATACATG
TCAGACAATCGCGCCCAAGATGAACTTGGCATAAATGAAGGTATCAACAT
TGAATATCTCTATGCTTCAGGAGTGGCACCATCTACATACCACTCATAGA
TGTCCTCACCGCACACATACATGGGCGAATCGGAGATAGCAGCTGCAAGA
GCAATATACGGCAAACAAATCCACGTTCACTTGACGGAATCCACCTTACC
TTTGCCTGAGTTTGCAACGACAGATGAAATACACCTATAATATACGGAAG
CATGTCGACATTACGACACGTACGAACTAATTCTTCCCGATCCTGGCTCA
TAATAATCTCCGTCCCAAATTTCAGGTGGTACCCACAACCTGGATGGTCA
TGGCTAGCCATCATGCGCGACCGGGAGTTGTGAGCAACAACACTAATTCC
ACCTTTCCAGTGCGGTCTTCCAACTTTTCTAGGTCGTACGCTGTTTGTTG
TGTTTTTCAAGGTCGGGGTTGGGAGTAAAAGGAGAGGCGGATACGACGAG
TGAATAGGAGAAGGCAGCAAGAGGGGGGAGGGGAAACGCAGCGGAGAGCT
TCTTCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2045353..2046260+

>mRNA_P-fluviatile_contig13.1832.1 ID=mRNA_P-fluviatile_contig13.1832.1|Name=mRNA_P-fluviatile_contig13.1832.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=570bp|location=Sequence derived from alignment at P-fluviatile_contig13:2045353..2046260+ (Porterinema fluviatile SAG_2381)
ATGTGTCTTCTTCCACCATCGAGCGTCGTCGACGGCATACCTCACACCGA
AAACATTGTATACGCTCCTTTTATTGAAGCTGCCACAGGCGTTATTACAC
AGCCTCCACCAAACATTCCTCCTTACCGTCTTCCTCCACCAGGAGCTCCA
CCTCTACCTCCTCCTCCACCTCCGCAAGAACCCCATTGGCTTTACAGAAA
TGAAATTGGTGACGGTGCATGTGGTTTCAGAGCTATTGCTAGACATGTTC
TGGGAGATCCCGAACTCCACCTTCAAATCCGTTAGATGTGTCTTCTTCCA
CCATCGAGCGTCGTCGACGGCATACCTCACACCGAAAACATTGTATACGC
TCCTTTTATTGAAGCTGCCACAGGCGTTATTACACAGCCTCCACCAAACA
TTCCTCCTTACCGTCTTCCTCCACCAGGAGCTCCACCTCTACCTCCTCCT
CCACCTCCGCAAGAACCCCATTGGCTTTACAGAAATGAAATTGGTGACGG
TGCATGTGGTTTCAGAGCTATTGCTAGACATGTTCTGGGAGATCCCGAAC
TCCACCTTCAAATCCGTTAG
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