mRNA_P-fluviatile_contig13.1831.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1831.1
Unique NamemRNA_P-fluviatile_contig13.1831.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1831.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.700e-12
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:   78 ARDITKSCTGKIKIGDLVVKAWDEPPLHLYCSKRLWANTVNKILDTKKTHKELGTT 245
            A D+   CTG I  GDLV+K WD PPLH YC++RLW  +V + L  KK  KE+GTT
Sbjct:   55 ADDLQTGCTGIISEGDLVIKDWD-PPLHFYCARRLWKESVTQTLKAKKIIKEIGTT 109
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BLAST of mRNA_P-fluviatile_contig13.1831.1 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 4.930e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   72 PTARDITKSCTGKIKIGDLVVKAWDEPPLHLYCSKRLWANTVNKILDTKKTHKELGTT 245
            P A D+   CTG I  GDLVVK WDEPPLHL C+KR W  TV  IL  K+  ++L +T
Sbjct:   62 PAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDST 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZU8_ECTSI2.700e-1255.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1C6_ECTSI4.930e-1255.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2038832..2040655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.7809691-CDS-P-fluviatile_contig13:2038831..20388741622815535.7809691-CDS-P-fluviatile_contig13:2038831..2038874Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038832..2038874 +
1693562170.9711382-CDS-P-fluviatile_contig13:2038831..20388741693562170.9711382-CDS-P-fluviatile_contig13:2038831..2038874Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038832..2038874 +
1622815535.7971103-CDS-P-fluviatile_contig13:2040450..20406531622815535.7971103-CDS-P-fluviatile_contig13:2040450..2040653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2040451..2040653 +
1693562170.978641-CDS-P-fluviatile_contig13:2040450..20406531693562170.978641-CDS-P-fluviatile_contig13:2040450..2040653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2040451..2040653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1831.1prot_P-fluviatile_contig13.1831.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2038832..2040653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1831.1

>prot_P-fluviatile_contig13.1831.1 ID=prot_P-fluviatile_contig13.1831.1|Name=mRNA_P-fluviatile_contig13.1831.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=82bp
QICHTGHGGTRHHQQSLFDVKQRHQQQGTSPSRAREKSRSEISWSRLGTS
PRSTCTAPSVCGPTQLTRSSTPRRPTRSLAPP
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mRNA from alignment at P-fluviatile_contig13:2038832..2040655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1831.1 ID=mRNA_P-fluviatile_contig13.1831.1|Name=mRNA_P-fluviatile_contig13.1831.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1824bp|location=Sequence derived from alignment at P-fluviatile_contig13:2038832..2040655+ (Porterinema fluviatile SAG_2381)
CAAATATGCCACACTGGCCACGGAGGGACAAGACATCATCAACGTAAGAC
CTGTTCCTCCCTTCTGTGCGTCAATCGATCAAAATCGATGTTGTTCGTGT
GTCCTTCTTCTGGCTCCCCTTCTCTCAACACTGTAGTAGTTTGTGTAACC
TTATCTGCTTGCCACTTGGATCTCTGTCTTCGCCTGTTATTTTCTTACAA
TCATTTAGAGAAACTAAGAAATGCGTGGGGAGCATGTCAGATAAGCATAA
ATTTTTGGTCAGCGAGAGGGGAAAAAACGGGCAGGTAGAAAGGTAGGGAA
TGAGCAAAGTTCTTGATACACTGGCCTAGCAAGGAATGGAACATTGTTCC
GTTAGCCTGCTTCCCCTCCCGCCTCTACCCTCCCTTCCCTTGCCAGCTCC
TTTCGTCCCTCCCGCCATTCCTCCTCCCCTCTCTCTCTTCATCTCTCTCT
CTATTTATCTTTCTCGCTCACTCTTTCTTCATCCTATTTTTTTCTGATTT
GTCTCTGTCTATTTTCTATTCCTCTCTCCCCCCAGCATTCTCCCCTCCCT
CTCTTTACCTCTCTGTCTCTCTCTCTCTCTGTGTCTTTTTCGCTCTCTCT
CTTCATCCACATTTTTTTCTGTTTGTCTCTGCCTATTTTATCTGTCTTTG
CCTGTTTTGGCTCTCTTCTTACCTCTCTCACCTCCTACCTCCCCCCTCTA
CACCACTATTCACCATCAACGAGAGACCTGTTCTTCCGTTTTCTGCGTCC
ATCGATGTTATTCAGTGTGTCCTTCTGGCTCCGGCTCAGTCGCGTGTCGT
CCCTTCCCCTGCCTGCTTTTCTGCTCTATTCTTTCGCGGGTATTTTCGTC
TGTTCTGCATGCCAAGCTTTCCTTTTCCTAATTCCTCAGCACTGCAGTAG
TTTGTTGCACTTTCTTCTGCTTGCCTCTTTGCACTCGGTGTTTGCCTGTT
ATCTAATGGTGTTTTTCAACCGTTCATTTTCTAAAAGAAAAATAGCCGCC
CCCTGTGTTCCTCTCTCGGTCTCCCTGTCCTCTTCCCTCTCTCTTCGTTA
CCCTGATTCCCCTCACGCGTCTACCCTTCCTTTCCCTCGCCAGCTCCATC
CCTCCCTCCCAACACCCCACCAACCCTCCGTCTCTCTTCCTCTCTCTCTC
TCTCTCTCTCTTCCTCCCTCTCTCTCTCTCTCTTGCTCCATATTTTTTCC
TCTGTTTGTCTCTGTCTATTTTCTCTGCCTCTGCCTGATTTGGCTCCCTT
CATACCTCTCTCACTCTCTGCCTCCCTGCTATACAAATCTATTCGCCTCC
TGTGTTCCTCTCTCTCTCTCTCTCGGTCTCCCTGTCCGCTTCCCTCTCTC
TTCGTTACCCTGATTCCATTCACACCTCTACCCTTCTTTTCCTTCGCCAG
CTCCATCCCTCTCTCCCCACACCCCACTTACCCTCCGTCTCTCTTCTTCT
CTCTCTCTCTGTCTTCCTCCATATTTTTTCTTCTGTTTGTCTCTCACTTT
TCCTCCCGGCTCTACACCACAATTCACCCCCTGAGTTCCCCTCTCTCGGT
CTCCCTGTCCTCTTCCCTCTCTCTCCCGTCCGGTTGCCCCACCGTCTTTA
TTGTTTTTATTATTTCCAGAAAGCCTGTTTGATGTCAAACAACGCCACCA
ACAGCAAGGGACATCACCAAGTCGTGCACGGGAAAAATCAAGATCGGAGA
TCTCGTGGTCAAGGCTTGGGACGAGCCCCCGCTCCACCTGTACTGCTCCA
AGCGTCTGTGGGCCAACACAGTTAACAAGATCCTCGACACCAAGAAGACC
CACAAGGAGCTTGGCACCACCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2038832..2040655+

>mRNA_P-fluviatile_contig13.1831.1 ID=mRNA_P-fluviatile_contig13.1831.1|Name=mRNA_P-fluviatile_contig13.1831.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=492bp|location=Sequence derived from alignment at P-fluviatile_contig13:2038832..2040655+ (Porterinema fluviatile SAG_2381)
CAAATATGCCACACTGGCCACGGAGGGACAAGACATCATCAACCAAATAT
GCCACACTGGCCACGGAGGGACAAGACATCATCAACAAAGCCTGTTTGAT
GTCAAACAACGCCACCAACAGCAAGGGACATCACCAAGTCGTGCACGGGA
AAAATCAAGATCGGAGATCTCGTGGTCAAGGCTTGGGACGAGCCCCCGCT
CCACCTGTACTGCTCCAAGCGTCTGTGGGCCAACACAGTTAACAAGATCC
TCGACACCAAGAAGACCCACAAGGAGCTTGGCACCACCCAAAGCCTGTTT
GATGTCAAACAACGCCACCAACAGCAAGGGACATCACCAAGTCGTGCACG
GGAAAAATCAAGATCGGAGATCTCGTGGTCAAGGCTTGGGACGAGCCCCC
GCTCCACCTGTACTGCTCCAAGCGTCTGTGGGCCAACACAGTTAACAAGA
TCCTCGACACCAAGAAGACCCACAAGGAGCTTGGCACCACCC
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