mRNA_P-fluviatile_contig13.1830.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1830.1
Unique NamemRNA_P-fluviatile_contig13.1830.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1830.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-12
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 TTCQVTATILAESSEHPKVCLVCQAPVGSTLSLGEPTKEKDDRGYTVWNNIHACHSICTGARTLD 195
            TTCQV+ +IL+     P +C +C   VG T SLG  + EK+ +G   W NIHAC +IC GA+T D
Sbjct:   63 TTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSD 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE1.260e-1247.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2038256..2038821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4859796-CDS-P-fluviatile_contig13:2038255..20383941622815569.4859796-CDS-P-fluviatile_contig13:2038255..2038394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038256..2038394 +
1693562280.0362098-CDS-P-fluviatile_contig13:2038255..20383941693562280.0362098-CDS-P-fluviatile_contig13:2038255..2038394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038256..2038394 +
1622815569.5012476-CDS-P-fluviatile_contig13:2038764..20388201622815569.5012476-CDS-P-fluviatile_contig13:2038764..2038820Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038765..2038820 +
1693562280.0460186-CDS-P-fluviatile_contig13:2038764..20388201693562280.0460186-CDS-P-fluviatile_contig13:2038764..2038820Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2038765..2038820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1830.1prot_P-fluviatile_contig13.1830.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2038256..2038820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1830.1

>prot_P-fluviatile_contig13.1830.1 ID=prot_P-fluviatile_contig13.1830.1|Name=mRNA_P-fluviatile_contig13.1830.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
TTCQVTATILAESSEHPKVCLVCQAPVGSTLSLGEPTKEKDDRGYTVWNN
IHACHSICTGARTLD
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mRNA from alignment at P-fluviatile_contig13:2038256..2038821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1830.1 ID=mRNA_P-fluviatile_contig13.1830.1|Name=mRNA_P-fluviatile_contig13.1830.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=566bp|location=Sequence derived from alignment at P-fluviatile_contig13:2038256..2038821+ (Porterinema fluviatile SAG_2381)
ACCACGTGCCAAGTGACCGCCACCATCCTCGCGGAAAGCAGCGAGCACCC
CAAGGTCTGCCTCGTGTGTCAAGCCCCGGTTGGTAGCACGCTTTCCCTCG
GCGAACCCACGAAGGAAAAGGACGACCGCGGGTACACGGGTGAGTTCTCT
TGATCACGAGTGCTCTTTTTTTCAAGATGCTTCGACACCCACACCCACTC
TGCATACAACATGAGGTTTATTTGTGACTTCACTGCCCTAAACTACATTG
GTTTGCTCCTGTTGGGCGCTTCTGCCATTTTCTCCTTGCAATCCTGCCAA
TCAGTTTCGAACAACATTCACGCCTGTCACTCCATCTAAACGGGAGCGAG
GACGGCCGTCTGCTCTTTTTTTCAACATGTTTCGACACCCACACCCACCG
TGCAACAACATGAGTTATTATTTGTGACTTCACTACCCTAAATAGACTAC
ATTCGTTTGCTCCTGTTGGGCGCTTCTGCCATTTTCTCCTTGCTATCCTG
CGCAATCAGTTTGGAACAACATTCACGCGTGTCACTCCATCTGCACGGGA
GCGAGGACGTTGGACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2038256..2038821+

>mRNA_P-fluviatile_contig13.1830.1 ID=mRNA_P-fluviatile_contig13.1830.1|Name=mRNA_P-fluviatile_contig13.1830.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig13:2038256..2038821+ (Porterinema fluviatile SAG_2381)
ACCACGTGCCAAGTGACCGCCACCATCCTCGCGGAAAGCAGCGAGCACCC
CAAGGTCTGCCTCGTGTGTCAAGCCCCGGTTGGTAGCACGCTTTCCCTCG
GCGAACCCACGAAGGAAAAGGACGACCGCGGGTACACGGACCACGTGCCA
AGTGACCGCCACCATCCTCGCGGAAAGCAGCGAGCACCCCAAGGTCTGCC
TCGTGTGTCAAGCCCCGGTTGGTAGCACGCTTTCCCTCGGCGAACCCACG
AAGGAAAAGGACGACCGCGGGTACACGGTTTGGAACAACATTCACGCGTG
TCACTCCATCTGCACGGGAGCGAGGACGTTGGACTTTGGAACAACATTCA
CGCGTGTCACTCCATCTGCACGGGAGCGAGGACGTTGGAC
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