mRNA_P-fluviatile_contig13.1814.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1814.1
Unique NamemRNA_P-fluviatile_contig13.1814.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1891895..1892649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size755
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1814.1prot_P-fluviatile_contig13.1814.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1892079..1892492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.5628493-UTR-P-fluviatile_contig13:1891894..18920781622815537.5628493-UTR-P-fluviatile_contig13:1891894..1892078Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1891895..1892078 +
1693562173.965834-UTR-P-fluviatile_contig13:1891894..18920781693562173.965834-UTR-P-fluviatile_contig13:1891894..1892078Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1891895..1892078 +
1622815537.5852547-UTR-P-fluviatile_contig13:1892492..18926491622815537.5852547-UTR-P-fluviatile_contig13:1892492..1892649Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1892493..1892649 +
1693562173.9943006-UTR-P-fluviatile_contig13:1892492..18926491693562173.9943006-UTR-P-fluviatile_contig13:1892492..1892649Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1892493..1892649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.574317-CDS-P-fluviatile_contig13:1892078..18924921622815537.574317-CDS-P-fluviatile_contig13:1892078..1892492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1892079..1892492 +
1693562173.973714-CDS-P-fluviatile_contig13:1892078..18924921693562173.973714-CDS-P-fluviatile_contig13:1892078..1892492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1892079..1892492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1814.1

>prot_P-fluviatile_contig13.1814.1 ID=prot_P-fluviatile_contig13.1814.1|Name=mRNA_P-fluviatile_contig13.1814.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=138bp
MGGMLEEQGGGKMRPNHCVLGLLSTAVTGPGVVSRLQDDQNADDCQKSKR
QLPLLKKHKTNRPLDPLERGRFSTPRQSRRNHSANTLGAPLFTREEGKKQ
EYPPRSAMQSFLCGGARRQVSRIKNTHVRVISSQSTR*
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mRNA from alignment at P-fluviatile_contig13:1891895..1892649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1814.1 ID=mRNA_P-fluviatile_contig13.1814.1|Name=mRNA_P-fluviatile_contig13.1814.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=755bp|location=Sequence derived from alignment at P-fluviatile_contig13:1891895..1892649+ (Porterinema fluviatile SAG_2381)
GGTCCCGTGTGTTCAGTCTCGAACCATGGATGTTGTGGACGCAACCAACC
CCATTTTGAGGAACAAGAAGAGCAGCAAACACGATTGGTGGCAACATGTC
ACGCTTACTCGTAAGTTCATGCAGCAGGAGCTCGAGATGGCCCGTGAGAG
TAGACCAGCAGGTCCCCAACGTGTTCCGTGAAAAATGGGGGGAATGCTAG
AAGAGCAGGGAGGAGGCAAAATGCGCCCAAACCATTGTGTGCTTGGGCTG
CTCTCCACCGCTGTTACTGGGCCAGGGGTCGTGTCACGGCTTCAAGACGA
CCAAAATGCTGATGATTGTCAAAAGAGCAAAAGGCAATTACCCTTGTTGA
AAAAGCACAAAACAAATCGGCCACTCGACCCACTCGAAAGAGGGAGATTC
TCCACACCCCGCCAATCGCGAAGAAATCATTCAGCAAACACATTAGGCGC
CCCCTTATTCACAAGAGAAGAGGGAAAAAAACAAGAATATCCACCGCGTA
GCGCTATGCAGTCTTTCTTGTGTGGTGGGGCGCGAAGGCAGGTGAGTCGC
ATAAAAAACACACACGTAAGGGTCATTTCCTCGCAGTCTACCCGCTGACA
CCTCTACGCTACAACAACTGCCCGCGGGTTTGGTCTGGATCGGATGAGTG
GGATGCTGCGATATCTACCACCGCCCATCATTAAAAACGAAAGAATCGGA
GCCAGGAGCAAAAGGGTATCATACACCGCTCGTCTCCACGAGGAACGACA
AAAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1891895..1892649+

>mRNA_P-fluviatile_contig13.1814.1 ID=mRNA_P-fluviatile_contig13.1814.1|Name=mRNA_P-fluviatile_contig13.1814.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig13:1891895..1892649+ (Porterinema fluviatile SAG_2381)
ATGGGGGGAATGCTAGAAGAGCAGGGAGGAGGCAAAATGCGCCCAAACCA
TTGTGTGCTTGGGCTGCTCTCCACCGCTGTTACTGGGCCAGGGGTCGTGT
CACGGCTTCAAGACGACCAAAATGCTGATGATTGTCAAAAGAGCAAAAGG
CAATTACCCTTGTTGAAAAAGCACAAAACAAATCGGCCACTCGACCCACT
CGAAAGAGGGAGATTCTCCACACCCCGCCAATCGCGAAGAAATCATTCAG
CAAACACATTAGGCGCCCCCTTATTCACAAGAGAAGAGGGAAAAAAACAA
GAATATCCACCGCGTAGCGCTATGCAGTCTTTCTTGTGTGGTGGGGCGCG
AAGGCAGGTGAGTCGCATAAAAAACACACACGTAAGGGTCATTTCCTCGC
AGTCTACCCGCTGAATGGGGGGAATGCTAGAAGAGCAGGGAGGAGGCAAA
ATGCGCCCAAACCATTGTGTGCTTGGGCTGCTCTCCACCGCTGTTACTGG
GCCAGGGGTCGTGTCACGGCTTCAAGACGACCAAAATGCTGATGATTGTC
AAAAGAGCAAAAGGCAATTACCCTTGTTGAAAAAGCACAAAACAAATCGG
CCACTCGACCCACTCGAAAGAGGGAGATTCTCCACACCCCGCCAATCGCG
AAGAAATCATTCAGCAAACACATTAGGCGCCCCCTTATTCACAAGAGAAG
AGGGAAAAAAACAAGAATATCCACCGCGTAGCGCTATGCAGTCTTTCTTG
TGTGGTGGGGCGCGAAGGCAGGTGAGTCGCATAAAAAACACACACGTAAG
GGTCATTTCCTCGCAGTCTACCCGCTGA
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