mRNA_P-fluviatile_contig13.1813.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1813.1
Unique NamemRNA_P-fluviatile_contig13.1813.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1886787..1887983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size494
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1813.1prot_P-fluviatile_contig13.1813.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1886875..1887359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.579902-UTR-P-fluviatile_contig13:1886786..18868741622815535.579902-UTR-P-fluviatile_contig13:1886786..1886874Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1886787..1886874 +
1693562170.879499-UTR-P-fluviatile_contig13:1886786..18868741693562170.879499-UTR-P-fluviatile_contig13:1886786..1886874Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1886787..1886874 +
1622815535.6199958-UTR-P-fluviatile_contig13:1887359..18873901622815535.6199958-UTR-P-fluviatile_contig13:1887359..1887390Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1887360..1887390 +
1693562170.9072204-UTR-P-fluviatile_contig13:1887359..18873901693562170.9072204-UTR-P-fluviatile_contig13:1887359..1887390Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1887360..1887390 +
1622815535.6331306-UTR-P-fluviatile_contig13:1887869..18879831622815535.6331306-UTR-P-fluviatile_contig13:1887869..1887983Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1887870..1887983 +
1693562170.914339-UTR-P-fluviatile_contig13:1887869..18879831693562170.914339-UTR-P-fluviatile_contig13:1887869..1887983Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1887870..1887983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.5951214-CDS-P-fluviatile_contig13:1886874..18871021622815535.5951214-CDS-P-fluviatile_contig13:1886874..1887102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1886875..1887102 +
1693562170.8924842-CDS-P-fluviatile_contig13:1886874..18871021693562170.8924842-CDS-P-fluviatile_contig13:1886874..1887102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1886875..1887102 +
1622815535.6085947-CDS-P-fluviatile_contig13:1887326..18873591622815535.6085947-CDS-P-fluviatile_contig13:1887326..1887359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1887327..1887359 +
1693562170.9000912-CDS-P-fluviatile_contig13:1887326..18873591693562170.9000912-CDS-P-fluviatile_contig13:1887326..1887359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1887327..1887359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1813.1

>prot_P-fluviatile_contig13.1813.1 ID=prot_P-fluviatile_contig13.1813.1|Name=mRNA_P-fluviatile_contig13.1813.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
MQAWRYIPAIALLVGLFGAASSRWRQIISPCPQHACTTTTQRCQRCAPGQ
TTVAGFDSSSTALSLVRSPGGCQHVSNTKSSNFWWP*
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mRNA from alignment at P-fluviatile_contig13:1886787..1887983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1813.1 ID=mRNA_P-fluviatile_contig13.1813.1|Name=mRNA_P-fluviatile_contig13.1813.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1197bp|location=Sequence derived from alignment at P-fluviatile_contig13:1886787..1887983+ (Porterinema fluviatile SAG_2381)
CAACACCGGAGATAAACCCACGCAAACACATCAGAAGCAACAAAAGCAGA
GCAGACAAATCGGTCCGCAGCGGCGGCGGGCCGGTAACATGCAGGCGTGG
CGATATATACCCGCGATCGCCCTGCTGGTTGGTCTTTTTGGAGCCGCATC
CTCGCGCTGGAGGCAGATCATCAGTCCGTGCCCGCAGCACGCGTGTACAA
CAACAACCCAGAGGTGCCAGCGCTGTGCGCCTGGCCAGACTACAGTAGCA
GGCTTTGACTCCAGTTCCACAGCCCTTTCCTTGGTCCGGAGCCCTGGCGG
CTGCCAGCATGTATCGGTGAGGCCGTGGCAAACATCGTGTGGCATTACAC
CAACACGTTGATTTCGCTTCTTCCGTTCATCGCAGGATGTTGTCTGCCGC
CTCCAGTCGAGCAATGTTTGGTTTGGATTGCGAGTGGGAGCCAAGCCTAA
GCGGCGCGCCACCTAACCCTGTCTCAACCGTCCCAGCTTTCGCTTCCTGA
TGGCACGGCCTTTGGCTTTCATCTGCAACGCGGCTCCAAGAACACGAAGT
CGTCCAACTTCTGGTGGCCCTGAAACTCCTCAAGAACCCTTCGATTACCA
CAAGGTACGCCTGCACTTCGTCTTTGATTAGTCTAGATTGAATTACAACC
TTTTAGGGCAACCGCTGGAAGCAGTCGTGCCTTGGTATTTGTAGCTAGGC
TTAGCTTTTCGTTTCTTCGCATGTGCAGGTTGGTATCAACGTCGATTTGG
ACGCGACACACCTTGAGCGGGACTACGGGGTCCAAATCGTGAACACGGTT
GACCTGCGAATCCTACGCGAGAGGGCTGGGTGGAGACCCCGTGTGGTTCG
CTGGCGGGTATTAAGTCTTCTTCGCTCGGGAAACAGTTGCCGAAGAATCC
CCTCGCCCGCTTGTGTCGCTGGAGTATTGCTTCCCTCACGGACGACCAGG
TGCTTTTTTTTTTTAGGTGGCGCTCGTATTTTTTCCGTTGGCTGATTGGT
TTGTTGCGCTAGTTCTGTTTGCTTTGCGCATGTGATGCTTTCTTGGAGCC
TTCGTCTGTGACTCCCTGCCGCGGCCGTCGCAGGTGTAGTATGTCTACCT
GGATGCGTACGCGTCTGTTCTCCTTTATTAGGAGATAGGAAAAGTCCAGG
ATCCTGTTTGTCTCCTCCTCCGAAGGGGTTGCCACCCGGAACAGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1886787..1887983+

>mRNA_P-fluviatile_contig13.1813.1 ID=mRNA_P-fluviatile_contig13.1813.1|Name=mRNA_P-fluviatile_contig13.1813.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig13:1886787..1887983+ (Porterinema fluviatile SAG_2381)
ATGCAGGCGTGGCGATATATACCCGCGATCGCCCTGCTGGTTGGTCTTTT
TGGAGCCGCATCCTCGCGCTGGAGGCAGATCATCAGTCCGTGCCCGCAGC
ACGCGTGTACAACAACAACCCAGAGGTGCCAGCGCTGTGCGCCTGGCCAG
ACTACAGTAGCAGGCTTTGACTCCAGTTCCACAGCCCTTTCCTTGGTCCG
GAGCCCTGGCGGCTGCCAGCATGTATCGATGCAGGCGTGGCGATATATAC
CCGCGATCGCCCTGCTGGTTGGTCTTTTTGGAGCCGCATCCTCGCGCTGG
AGGCAGATCATCAGTCCGTGCCCGCAGCACGCGTGTACAACAACAACCCA
GAGGTGCCAGCGCTGTGCGCCTGGCCAGACTACAGTAGCAGGCTTTGACT
CCAGTTCCACAGCCCTTTCCTTGGTCCGGAGCCCTGGCGGCTGCCAGCAT
GTATCGAACACGAAGTCGTCCAACTTCTGGTGGCCCTGAAACACGAAGTC
GTCCAACTTCTGGTGGCCCTGA
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