mRNA_P-fluviatile_contig13.1794.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1794.1
Unique NamemRNA_P-fluviatile_contig13.1794.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1713102..1714210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1109
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1794.1prot_P-fluviatile_contig13.1794.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1713259..1713918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.4894152-UTR-P-fluviatile_contig13:1713101..17132581622815537.4894152-UTR-P-fluviatile_contig13:1713101..1713258Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1713102..1713258 +
1693562173.9415498-UTR-P-fluviatile_contig13:1713101..17132581693562173.9415498-UTR-P-fluviatile_contig13:1713101..1713258Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1713102..1713258 +
1622815537.519378-UTR-P-fluviatile_contig13:1713918..17142101622815537.519378-UTR-P-fluviatile_contig13:1713918..1714210Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1713919..1714210 +
1693562173.9576235-UTR-P-fluviatile_contig13:1713918..17142101693562173.9576235-UTR-P-fluviatile_contig13:1713918..1714210Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1713919..1714210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.5045433-CDS-P-fluviatile_contig13:1713258..17139181622815537.5045433-CDS-P-fluviatile_contig13:1713258..1713918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1713259..1713918 +
1693562173.9498043-CDS-P-fluviatile_contig13:1713258..17139181693562173.9498043-CDS-P-fluviatile_contig13:1713258..1713918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1713259..1713918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1794.1

>prot_P-fluviatile_contig13.1794.1 ID=prot_P-fluviatile_contig13.1794.1|Name=mRNA_P-fluviatile_contig13.1794.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=220bp
MLAMRSILRRLFRLPHSRRPDIVARSLGGLESERGYHGPPTEQKQSPHDR
RNNARFRADAVAFLLRVRFMGHYPMPPAENKTKQQTKLPLSPGDETRLPT
SWHSRGEYEPPYHDLCLKTLRTDGWMGGWTDAFTRLTGQSIIPQWMDGRR
KGGRVPETDLTSLLLDASPESLRRQQRNSNATFPVRAGEQGRHCCCGAIN
GSAINSIAFRHGIYSRRGH*
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mRNA from alignment at P-fluviatile_contig13:1713102..1714210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1794.1 ID=mRNA_P-fluviatile_contig13.1794.1|Name=mRNA_P-fluviatile_contig13.1794.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1109bp|location=Sequence derived from alignment at P-fluviatile_contig13:1713102..1714210+ (Porterinema fluviatile SAG_2381)
GGTCAGGTCAAGCCAAGCCAAGCCAACTCACGCCAAGTCGAGTCGAGTCG
AGTTGAGTCGAGTCGAGTCGAATCTCGTGGGAAGATTCGGGCGGAAACGA
CAGCAGTGAAGACCAAGGGTAGGGAAAGCTTCAAGCTCCACCCCCGTGGT
CTCCCTCATGCTTGCAATGCGATCGATCCTTCGCCGCTTATTTCGGCTTC
CTCATTCTCGTCGACCGGACATCGTGGCTCGAAGCTTGGGAGGGCTCGAA
AGCGAGCGTGGGTACCACGGTCCACCCACAGAACAAAAGCAAAGCCCACA
CGACAGACGTAACAACGCTCGGTTTCGAGCTGATGCCGTTGCCTTTCTGC
TACGCGTGCGTTTCATGGGTCATTACCCTATGCCCCCCGCCGAGAACAAG
ACAAAACAGCAAACAAAACTTCCTCTATCCCCTGGTGATGAAACCAGACT
ACCCACCTCCTGGCATTCCAGGGGCGAGTATGAACCCCCCTATCACGATC
TATGTTTGAAAACCTTACGAACGGATGGATGGATGGGTGGATGGACGGAT
GCATTCACCCGATTGACGGGTCAATCGATCATTCCACAATGGATGGATGG
AAGAAGGAAAGGAGGGAGGGTACCGGAGACCGACTTGACTAGCCTCCTAT
TAGATGCCTCTCCGGAAAGCTTACGACGACAACAACGAAATTCCAATGCC
ACCTTTCCTGTGAGGGCGGGAGAGCAGGGGCGCCATTGTTGCTGTGGAGC
AATCAATGGTTCAGCAATCAATAGCATCGCTTTCAGGCATGGTATCTATT
CGAGGAGGGGGCACTGACTGCGCTCGTCTCAACAGAGAGGCACCATGAAG
TTTCCAGGAGGGGGGACCGTGAGCGTTGACCGCATGCCGTGCCCCACTGT
ATGATACTTCGCCCACACCGATCGCCCCGCTCCAATCTACGCACACCTTT
CTTTCTGCCAACAGGATTCTCCCGTGACTGACAAGCATGGACAATCGATA
AAAAAACGGAAGCCGGAGCTTCGCACCTGGAGCTCGGCGGCCATGTTAGC
CATCGCAATGCTCTCCCTCTCCCTCTCCCACCGTTTCTCCTGCTCGACCT
CGTCCTCCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1713102..1714210+

>mRNA_P-fluviatile_contig13.1794.1 ID=mRNA_P-fluviatile_contig13.1794.1|Name=mRNA_P-fluviatile_contig13.1794.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1320bp|location=Sequence derived from alignment at P-fluviatile_contig13:1713102..1714210+ (Porterinema fluviatile SAG_2381)
ATGCTTGCAATGCGATCGATCCTTCGCCGCTTATTTCGGCTTCCTCATTC
TCGTCGACCGGACATCGTGGCTCGAAGCTTGGGAGGGCTCGAAAGCGAGC
GTGGGTACCACGGTCCACCCACAGAACAAAAGCAAAGCCCACACGACAGA
CGTAACAACGCTCGGTTTCGAGCTGATGCCGTTGCCTTTCTGCTACGCGT
GCGTTTCATGGGTCATTACCCTATGCCCCCCGCCGAGAACAAGACAAAAC
AGCAAACAAAACTTCCTCTATCCCCTGGTGATGAAACCAGACTACCCACC
TCCTGGCATTCCAGGGGCGAGTATGAACCCCCCTATCACGATCTATGTTT
GAAAACCTTACGAACGGATGGATGGATGGGTGGATGGACGGATGCATTCA
CCCGATTGACGGGTCAATCGATCATTCCACAATGGATGGATGGAAGAAGG
AAAGGAGGGAGGGTACCGGAGACCGACTTGACTAGCCTCCTATTAGATGC
CTCTCCGGAAAGCTTACGACGACAACAACGAAATTCCAATGCCACCTTTC
CTGTGAGGGCGGGAGAGCAGGGGCGCCATTGTTGCTGTGGAGCAATCAAT
GGTTCAGCAATCAATAGCATCGCTTTCAGGCATGGTATCTATTCGAGGAG
GGGGCACTGAATGCTTGCAATGCGATCGATCCTTCGCCGCTTATTTCGGC
TTCCTCATTCTCGTCGACCGGACATCGTGGCTCGAAGCTTGGGAGGGCTC
GAAAGCGAGCGTGGGTACCACGGTCCACCCACAGAACAAAAGCAAAGCCC
ACACGACAGACGTAACAACGCTCGGTTTCGAGCTGATGCCGTTGCCTTTC
TGCTACGCGTGCGTTTCATGGGTCATTACCCTATGCCCCCCGCCGAGAAC
AAGACAAAACAGCAAACAAAACTTCCTCTATCCCCTGGTGATGAAACCAG
ACTACCCACCTCCTGGCATTCCAGGGGCGAGTATGAACCCCCCTATCACG
ATCTATGTTTGAAAACCTTACGAACGGATGGATGGATGGGTGGATGGACG
GATGCATTCACCCGATTGACGGGTCAATCGATCATTCCACAATGGATGGA
TGGAAGAAGGAAAGGAGGGAGGGTACCGGAGACCGACTTGACTAGCCTCC
TATTAGATGCCTCTCCGGAAAGCTTACGACGACAACAACGAAATTCCAAT
GCCACCTTTCCTGTGAGGGCGGGAGAGCAGGGGCGCCATTGTTGCTGTGG
AGCAATCAATGGTTCAGCAATCAATAGCATCGCTTTCAGGCATGGTATCT
ATTCGAGGAGGGGGCACTGA
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