mRNA_P-fluviatile_contig13.1793.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI) HSP 1 Score: 459 bits (1181), Expect = 4.510e-128 Identity = 506/1279 (39.56%), Postives = 615/1279 (48.08%), Query Frame = 3
Query: 3405 REFNRYWWFGGDPSVLLHVEEKGGGTWAQYKTKREVDALIESQHPRGKRGCPLRQKLSQTKDEMSVGFERARLIDEANEARRRVEEADRRQRERLAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGPPTLGKPTAAIRT--PEEVRAVRDRETHDHGIGNPSGNQISSSRLEAARAAAEAEAEAAGPYVPLIEAWRQVARGADRDYVRNLKLELTTVEEQLANLGGA-VEGGHSKDRHGWLREVAAARDALGIRKAAVQLEEALYACMRDMTDNLEIDWSSMTVADGEDVSWDSPYDWSFLKLEARERRKGKDRERRAAAAQYRGDESAAAAPKGKRKVAKNGATKAGTRAEVK-----EEEVAAETESAEVVQSGVSDAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASNTRESPDTTAGTEGAGASGGSPVKDEQHAASSGGISEAXXXXXXXXXXXXXXXXXXXXXXXXXPSRDSGKQEEAAIPPRQSRPGEPSDVPTPLEEAPRTLLPPSQRSETKHGAAGGGRARDXXXXXXXXXXXXXXXAESALTDTVDIHGPEKVLETKEEQADEAEFSTPELVTVTNSKVEPAAPAAGAPAAEGETKADASAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISKDADSEEAPSVVLGKTEIAAAAVEATSAVVGDPMQVDGEGQGVGAAESTSGNQASPSPGAQVVDGRVGADKME-------IEDCQEGGESAGAAAGAPELAESRPSGDGGSGIGGGVGDDGMDSRA----GDSQVTGEDGEXXXXXXXXXQMEKGAGGQKETEXXXXXXXXXXXXXXXXXXXXXXDKEVESNHGVRESGGAAEASAVVL---------RTSVTKDKKGAGEQG--EGRQAVDSEXXXXXXXXXXXXXXXXXXXXXXXXXXESIAMANMAAELQGALSTNPTFRESWRKETLAARTLAGVSTLVYSLIQSAAGILPLLQAQHMQEQALVRQDLAMNQALRVRCSSTSEIVWARLHGFPWWPALVVKPSGAGLQRSLEETGDRLVVFMSENEFYRVNHRFCKPYIGTSHDEIMRRASRGNKRMAKAIKMATKGLRVAHERLGSDGDPNAPRNRPKFGTPPPSE------------AAGTAGTAEGLPMPSGEGDRN-------TASRDVPPGAAAQQGLALAAXXXXG-------------ASRPRRTTKLPRHLTEDMDVGGGGRGDAEDFGGQGACKRKGRAANNGGPFPAGRSHKRG 7055
REFNRYWWFGG PS ++HVEEKGG W QY++++EVDAL++SQHPRGKRG PLR++L Q+KDEM VGFER RL+D A EA R+V E ++ R A XXXXXXXXXXXXXXXXXXXXXXX PGP + GK A T V A+ R +G N S S R+EAARAAAEAEA A PYVPL+ AWR VAR DRD++RNLKLELT++EEQ+A LG V G HSKDRHGW+REVA ARD L +R+ AVQLE ALYAC RDM +NL +DWSSM VA+GEDVSWDSPYDW+FLK + R+RRKGKDRE+RA+ + +A G + G T A A + + VA + ES + S + A XXXXXXXXX + +E T G +GA V +E ++G + A E +P ++ P EE+ LP + R V+ E+ A +A +TP + T A E K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D E+ +T + A + T+ G + E G G+A ++A+ P +V G V ++ +ED +EG P+ G+ DDG + G ++ T + G +E AG T + N G GG +AV L +T T K A + G EG + +D XXXXXXXXX E IA+AN++AELQGALST+P FRE+WRKE LAARTLAGV+TLVYSL+ SAAG+LP LQ Q MQEQAL+ QDLA NQALRVRCSSTSEIVWARLHGFPWWPALVVKP G G Q MATKGLRVAHER GSDGDPNAP NRP F T AAGT T T+ R VPPG AAQ+GLALAAXXXX SRPRRT K+P++LTE M GG G+G ++ GR + G + A +S KRG
Sbjct: 698 REFNRYWWFGGGPSEVIHVEEKGGDVWGQYRSQQEVDALMDSQHPRGKRGAPLRRRLCQSKDEMQVGFERVRLVDAAEEAERKVREDIEQEHLRQLAAVXXXXXXXXXXXXXXXXXXXXXXXGDSSTRRSSRKRPGPSSPGKFAAVSTTIASPPVGALEHRTQGSNGNSNSS-----SGRMEAARAAAEAEA--AQPYVPLLPAWRHVARRGDRDFLRNLKLELTSLEEQVAPLGNTTVTGRHSKDRHGWVREVATARDVLALRRPAVQLERALYACSRDMMENLAMDWSSMAVAEGEDVSWDSPYDWTFLKSQGRDRRKGKDREQRASLGEDGRAAPSATVGSGSAAIGGGGPTAAEVGASARAPSRGKRNVAKKRESGRELTSPAAAQAX------------------------XXXXXXXXXAAAFMGRGRQEGEGTREGAQGARKVAREEVIEEARVFAAGDSAGAGVNSLA----------------------------ELLVPGGKAPP----------EESSAGCLPSAGR----------------------------------------------VVFQDEDDAQKA--TTPAVAT----------------RASDEAK---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDDEK------DRTRLKEGADDRTATDAGGSISHPPEAAGGGSAADNVASEANSGP-MEVEGGGVELERNSGTMKTAAVEDSREG----------------EPA---------GMSDDGNGDKTPVLDGQTEATPDAG-GDTGPNAAFPVEDAAGAAASTPA-----------------------DSGGNEG---DGGNPSKTAVALGVGGDGSTKKTPTTMTKAEADDAGLTEGNE-MDGMDEAAEEXXXXXXXXXVEPEKRWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLLTSAAGVLPALQEQDMQEQALINQDLATNQALRVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQ------------------------------------------------------MATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQXXXXXXXXXXXXXAAGTRLTGSAXXXXXXXXXXXXXXXXPATSHRSVPPGQAAQRGLALAAXXXXXXXXXXAAGGETGKVSRPRRTPKVPKYLTEGMVGDGGADAPVRSIAGKGKKRKDGRVGGSTGMWQARKSQKRG 1720
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A6H5JEA8_9PHAE (PWWP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA8_9PHAE) HSP 1 Score: 337 bits (864), Expect = 6.810e-92 Identity = 398/1190 (33.45%), Postives = 502/1190 (42.18%), Query Frame = 3
Query: 4089 LANLGGA-VEGGHSKDRHGWLREVAAARDALGIRKAAVQLEEALYACMRDMTDNLEIDWSSMTVADGEDVSWDSPYDWSFLKLEARERRKGKDRERRAAAAQYR--------GDESAAAAPKGKRKVAKNGATKA---GTRAEVKEEEVAAETESAEVVQSG-----VSDAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASNTRESPDTTAGTEGAGASGGSPVKDEQHAASSGGISEAXXXXXXXXXXXXXXXXXXXXXXXXXPS--RDSGKQEEAAIPPRQSRPGEPSDVPTPLEEAPRTL--LPPSQRSETKHGAAGGGRARDXXXXXXXXXXXXXXXA----ESALTDTVDIHGPEKVLETKEE-----------------QADEAEFSTPELVTVTNSKVEPAAPAAGAPAAEGETKADASAV-----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISKDADSEEAPSVVLGKTEIA---AAAVEATSAVVGDPMQVDGEGQGVGAAEST--------SGNQASPSPGAQ-----VVDGRVGADKMEIEDCQEGGE-----SAGAAA--------------------------------------GAPELAESRPSGDGGSGIGGGVGDDGMDSRAGDSQVTGEDGEXXXXXXXXXQMEKGAGGQKETEXXXXXXXXXXXXXXXXXXXXXXDKEVESNHGVRESGGAAEASAVVL-------RTSVTKDKKGAGEQG--EGRQAVDSEXXXXXXXXXXXXXXXXXXXXXXXXXXESIAMANMAAELQGALSTNPTFRESWRKETLAARTLAGVSTLVYSLIQSAAGILPLLQAQHMQEQALVRQDLAMNQALRVRCSSTSEIVWARLHGFPWWPALVVKPSGAGLQRSLEETGDRLVVFMSENEFYRVNHRFCKPYIGTS-HDEIMRRASRGNKRMAKAIKMATKGLRVAHERLGSDGDPNAPRNRPKFGTPPPSE-------------AAGTAGTAEGLPMPSGEGDRN-------TASRDVPPGAAAQQGLALA------------AXXXXG----ASRPRRTTKLPRHLTEDMDVGGGGRGDAEDFGGQGACKRKGRAANNGGPFPAGRSHKRGGGVGLEQXXXXXXXXXXXXXXXXXXKRLTAVARAAVDSGSIDM 7184
+A LG V G HSKDRHGW+REVA ARDAL +R+ AVQLE AL RDM ++L IDWSSM VA+GEDVSWDSPYDW+FLKL+ R+RRKGKDRE+RA++ + G AA G A A +A G R K+ E E S Q+ VS AA A +E GT+GA V +E ++G I+ A PS R + + A + +P TP EA + + S T GG +A D S+ G E + + A+ + T + T T V + P A PA +A V G + + D + +A + E A +AA S PM+V+G G + +T S QA S V+DG+ A +D +AGAAA G +++PSG D D D++V E + + GAG +++VE+++ V + AA A+ + + ++T K A G EG ++ XXXX E IA+AN++A LQGALST+P FRE+WR+E LAARTLAGV+TLVYSL+ SAAG+LP LQ Q MQEQAL+ NQAL VRCSSTSEIVWARLHGFPWWPALVVKP G G QRSL E GDRLVVFM+E + +RVNHRFCKPY+GT+ HD +MRRASR N+RMA+AIKMATKGLRVAHER GSDGDPNAP NRP F T AAG T P T R VPPG AAQ+GLALA A G SRPRRT K P++L E M GG G+G + GR + G + A +S KRG XXXXXXXXXXX K LTA+A+A + SGS++M
Sbjct: 8 VAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLERAL----RDMMESLAIDWSSMAVAEGEDVSWDSPYDWTFLKLQGRDRRKGKDREQRASSGEDGRAALSATVGSGIAAVGGWGPTAAAVGAAARAPSRGKRKVAKKREGGRELTSPAAAQAXXXXXXVSPAAAA-----------------------------------LTGRGRQEGESIREGTQGASKMAREEVAEEARVFAAGDIAGAGANSLAELLVPVGEASPEESSAGCLPSAARVAFHDGDDAEKVTEKADSQPPTADTPANEATQVTGDKQDAATSTTNTARLGGLQASDSAQLSAYSTPLEGKVGVVRPASSSEKATARDGGEGLNASNAXXXXXXXXXXXXXXXXXXDAEGSSVGTSDTSTATGRTVA-SEPKATTPAVATRASEEAKEVRALNKVKEEKAGKTDISGERMGGFRGGGVIGPAGVDDEKDCTRLKEEADDGTATDAGGSISHPREAAGGGSAAGNVASEASSGPMEVEGGGVELEKGSATMKMAAVEESREQAGMSDDGNGDKTPVLDGQTEATPAAGDDTGPDDAFFLKGAAGAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSKTAGVDRFEKTKPSGT----------QDDSDDGDDDAEVP----EIVEGMQEGGRRDPGAG----------------------------EQQVEADNAVATAAVAAATVALSVAGDGSTKKPTMTMTKAEADHAGLTEGNVSLKRVDLEPRYEEDEEXXXXVEPEKRWEMEREGIALANLSAGLQGALSTDPAFREAWRQEMLAARTLAGVATLVYSLLASAAGVLPALQEQDMQEQALI------NQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEAGDRLVVFMNEQQHFRVNHRFCKPYVGTTKHDGVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQXXXXXXXXXXXXALAAGERLTGSATAAPPAXXXXXXXXXXXXTTHRLVPPGQAAQRGLALAXXXXXXXXXXXXAGGRRGETVMVSRPRRTPKPPKYLIEGMVGNGGADAPVRSIAGKG---KDGRVGGSSGVWRASKSQKRGX-XXXXXXXXXXXXXXXXERQPSRKKMLTALAQAELASGSMNM 1105
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A6H5JBK5_9PHAE (WHIM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBK5_9PHAE) HSP 1 Score: 235 bits (599), Expect = 5.520e-63 Identity = 135/226 (59.73%), Postives = 159/226 (70.35%), Query Frame = 1
Query: 2134 RPPRPVPVHRLRVPPTAVGDLLTVWNFIKTFGPEVHAEEVAALTLEEFETAVL-SSN-----KKNVHPLIAGLNLALLREALARNGDGSPSRAAEAALTSMVPVRRILGDLLNPATWPEVLRRFASAHLRYSRALFSRHGRG--EWVEEGHPLATAVEALARRGGGDLSATEILAVLRWLSDVLMDAPTIRAKVNDHADRVSRLSLLDKKRVEAEDRAIVESLRAS 2787
RPPRP PV+RLRVP AVGDLLTVW+F+K E+H +E + LTLEEFETAVL SSN KK+VHPLIA +L + PVRRILGDLLNPATWPEVLRRFA A+LRYSRALFSRHGRG E V+EGHPLATAVE L+RRG GDLS++E L VLRWLSDVLMD+ ++RAK+ HA+ SR++ D+K+ E D + ESL S
Sbjct: 279 RPPRPTPVNRLRVPAGAVGDLLTVWDFLK----ELHLKEPSVLTLEEFETAVLWSSNNTFESKKSVHPLIAEFHLDM-----------------------QAPVRRILGDLLNPATWPEVLRRFAMAYLRYSRALFSRHGRGRGEGVDEGHPLATAVETLSRRGCGDLSSSETLCVLRWLSDVLMDSRSVRAKIAQHAELQSRVTARDRKKAEERDHLVAESLSLS 477
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A6H5KS71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS71_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 3.340e-15 Identity = 102/284 (35.92%), Postives = 125/284 (44.01%), Query Frame = 3
Query: 3402 FREFNRYWWFGGDPSVLLHVEEKGGGTWAQYKTKREVDALIESQHPRGKRGCPLRQKL-----------------------SQTKDEMSVGFERARLIDEANEARRRVEEADRRQRERLAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGPPTLGKPTAAIRTPEEVRAVRDRETHDHGIG-NPSGNQISSSRLEAARAAAEAEAEAAGP-------------------------------YVPLIEAWRQVARGADRDYVRNLKLELTTVEEQ 4088
FREFN YWWFGG S EVDAL++SQHP+GKRG PLR++L S++KDEM VGFER RL+D A EA R+ +E ++R R XXXXXXXXXXXXXXXXXXX PGP + VR + G+G + SG ++ A E A G VPL+ AWR VAR DR ++RNLKLEL ++EEQ
Sbjct: 2 FREFNNYWWFGGGRS-------------------EEVDALMDSQHPQGKRGAPLRRRLCQGGYISISNRNAAFQSPSSINLSKSKDEMQVGFERVRLVDAAEEAERKAQEDIEQERLRQLAEAXXXXXXXXXXXXXXXXXXXRGVNGDSSTRRSSRKRPGPSS------------PVRCSCENVNVFAGVGFDASGKSVAVRMTTADLPVGALERRAQGSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLLPAWRHVARREDRGFLRNLKLELISLEEQ 254
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A7S2BI97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI97_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.240e-8 Identity = 33/108 (30.56%), Postives = 56/108 (51.85%), Query Frame = 3
Query: 6354 AMNQALRVRCSSTSEIVWARLHGFPWWPALVVKPSGAGLQRSLEETGDRLVVFMSENEFYRVNHRFCKPYIGTSHDEIMRRASRGNKRMAKAIKMATKGLRVAHERLG 6677
A++ ++RV TSE+VWAR+ G+PWWP+ V +P +++ E + LVVF+ E Y + P+ G D M + R +R + T+ ++ E+ G
Sbjct: 29 AIDPSVRVSSEPTSEMVWARVKGYPWWPSRVHRPRDPKFSQAMSERNEILVVFVGEAAQYHLPLEDTAPFTGDEQDSHMPKKDRHIQRSLRLAIHTTRMIQAHEEKTG 136
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A7S3JYV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYV4_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.290e-5 Identity = 48/176 (27.27%), Postives = 76/176 (43.18%), Query Frame = 3
Query: 6171 LQGALSTNPTFRESWRK------------ETLAARTLAGVSTLVYSLIQSAAGILPLLQAQHMQEQALVRQDLAMNQALRVRCSSTSEIVWARLHGFPWWPALVVKPSGAGLQRSLEETGDRLVVFMSENEFYRVNHRFCKPYIGTSHDEIMRRASRGNKRMAKAIKMATKGLRVA 6662
L G S P RE W K +T AR A +TL L + A L++A + ++ + + + + VWAR+ G+PWWPA P ++LE +L+VF++E+ Y ++ +P+ G D RM K+IK KGL++A
Sbjct: 1010 LSGPGSDIPHHRELWHKAIDACVSTQKDEDTFEARASA-FATLYGFLAEVVAQRTVLIEAWSISAANVLESESRLTSTVFIPSDPKPGFVWARIRGYPWWPAREYIPKSPHFAQALERRNHKLLVFVNESVMYLIDSNSVEPFTGLPDDP----------RMPKSIKQCAKGLQLA 1174
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Match: A0A7S2CLH6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLH6_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.380e-5 Identity = 47/171 (27.49%), Postives = 77/171 (45.03%), Query Frame = 3
Query: 6195 PTFRESWR---KETLAARTLAGVSTLVYSLIQSAAGILPLLQAQHMQEQALVRQDLAMNQ---------ALRVRCSSTSEIVWARLHGFPWWPALVVKPSGAGLQRSLEETGDRLVVFMSENEFYRVNHRFCKPYIGTSHDEIMRRASRG---NKRMAKAIKMATKGLRVA 6662
P R WR KET+ +T A + L+Y+L +A LP ++ Q + L+ + + A+ + T ++WAR+ GFPWWPA + +R L+E + L+VF+ E Y + P++G D M + + K + AI A +R A
Sbjct: 79 PETRNGWRLKLKETI--KTEASYALLLYTLTDTARRRLPDIEHQANEATQLLNGNAPRAEGPMVSTRAAAVMIPSIGTQTMLWARVSGFPWWPARLHTALNPEFERVLKERSEVLIVFVGEAHKYHLPETSVAPFLGNDEDPHMPKQGKSPVTKKELQMAINTALSIIRTA 247 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig13.1793.1 >prot_P-fluviatile_contig13.1793.1 ID=prot_P-fluviatile_contig13.1793.1|Name=mRNA_P-fluviatile_contig13.1793.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=2035bp MTLEEKEAVLSSRAQERRSAVRKEALGWDRCDAINVTRLLLFASALVCAAback to top mRNA from alignment at P-fluviatile_contig13:1703844..1729407- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig13.1793.1 ID=mRNA_P-fluviatile_contig13.1793.1|Name=mRNA_P-fluviatile_contig13.1793.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=25564bp|location=Sequence derived from alignment at P-fluviatile_contig13:1703844..1729407- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig13:1703844..1729407- >mRNA_P-fluviatile_contig13.1793.1 ID=mRNA_P-fluviatile_contig13.1793.1|Name=mRNA_P-fluviatile_contig13.1793.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=12210bp|location=Sequence derived from alignment at P-fluviatile_contig13:1703844..1729407- (Porterinema fluviatile SAG_2381)back to top |