mRNA_P-fluviatile_contig13.1784.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1784.1
Unique NamemRNA_P-fluviatile_contig13.1784.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1616665..1619283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1784.1prot_P-fluviatile_contig13.1784.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1616665..1619185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.4226832-CDS-P-fluviatile_contig13:1616664..16168411622815535.4226832-CDS-P-fluviatile_contig13:1616664..1616841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1616665..1616841 -
1693562170.8129938-CDS-P-fluviatile_contig13:1616664..16168411693562170.8129938-CDS-P-fluviatile_contig13:1616664..1616841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1616665..1616841 -
1622815535.4373753-CDS-P-fluviatile_contig13:1619113..16191851622815535.4373753-CDS-P-fluviatile_contig13:1619113..1619185Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1619114..1619185 -
1693562170.8250031-CDS-P-fluviatile_contig13:1619113..16191851693562170.8250031-CDS-P-fluviatile_contig13:1619113..1619185Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1619114..1619185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.4496756-UTR-P-fluviatile_contig13:1619185..16192831622815535.4496756-UTR-P-fluviatile_contig13:1619185..1619283Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1619186..1619283 -
1693562170.8336294-UTR-P-fluviatile_contig13:1619185..16192831693562170.8336294-UTR-P-fluviatile_contig13:1619185..1619283Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1619186..1619283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1784.1

>prot_P-fluviatile_contig13.1784.1 ID=prot_P-fluviatile_contig13.1784.1|Name=mRNA_P-fluviatile_contig13.1784.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=83bp
MSKSPETSLDTGMMEQQQPQQVSQGDAQAMAYYNNANMYGAGGAIMGQMG
QMPIMMHPQLQQQQLHLQQQQQQPGVGVGVVKR
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mRNA from alignment at P-fluviatile_contig13:1616665..1619283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1784.1 ID=mRNA_P-fluviatile_contig13.1784.1|Name=mRNA_P-fluviatile_contig13.1784.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2619bp|location=Sequence derived from alignment at P-fluviatile_contig13:1616665..1619283- (Porterinema fluviatile SAG_2381)
CACACACTTTTCTACCAACGGTACCCCTCCGGACGACGACGAATCGAGAG
ACGGGGAATAGAACGTGGGTAAAGGCGTGGTGTACGTGAAATACGCCTAT
GTCGAAATCTCCTGAGACTTCCCTCGACACTGGCATGATGGAGCAACAGC
AGCCGCAGCAAGTGTCACAGGTGTGTGTGCCATCGATAAACCCGGAGAGA
GCAGATCGACAAAAAAGACGCCGAGTGATAAGAGCAAAAGAAACCCGCCG
CGCAGGGTGTGGCCGTTGCCAAGGGCTATCTGGAATGCGAACGTGTGATG
GTGCGGTTCAATTAACGGGCAAGCCCGGCTTCGGCTGCGTGAAAGACACG
CAGCGGTGGCGCACACATAATCACTTGGGTCTTGGCGCATAACTTTGCCC
CGTCCACGTGAGATCGTATATCCCACCCCCCGCTCGCTCTTGAACCTGCT
TAGACGGCAACACACACAAGTCTGGAGTCTGCAATAAATCTGCTTTGCTC
CTGTTTAGTAGTTGAGAGAAAGAGCAGCCGCTACCCTTGCTACCCTGTCC
CAGGGCCTGGCTGTCGGGGCGGATGCGTTACCCTGTGATAGGCGGGAAAA
ACTATCTTTCCGTGCTCCCATCTTCTACCTTTCTCTCTGCTGGTCGCTCT
TTCGTGGTCTATTTCCTCTCTCAACCGTTTTTCCCCTCTCGCCGCCCCTC
CGCCGAGCGAGCCACGTTTTTTTTTGCTCTTTAGCGAACAGTCGACGAGA
GGCAGAGTTCCCGTCGTTGCTCTCGAGCTTGCGTTTCACCGCTCTCGTAC
GAAACCCAAGATGCTCACCGGATCCTCGTAGTTGACTGATGGGGCGCGAC
CAGGGTCCAGGGTCGCGCATCCTCGAGAGAAGAGAGAGGCGGGGAAGCGC
ACTATTTTCATTTTTTTTTGCTTTGTACAGCCGTGGCAATAAGAAATCGT
GGAATCTGTGGCCGCATCGAAAGGTTGGTTCCCGATCGATCTCTTCGTCA
ACCTCAGGTGAAGACGCGCAGACACACTCGTAGGCAACTCACGTATGCGC
ATTTTTCGTCGCGAGAGAGCGCAACATCCGACCCCGTCAATCTGACTGTC
TTTGAGGGTCTTTTTTACCGAACGGTAGCGTCGGCATACACGTGTCCAAA
ACCTGGCGCGGTTCGCGAGACGCGTCGAAGATTTCCGCCGGCTATTCGAT
GATCACAAACGTCACATCGTGACAACCTCCTGTCTGACGGTCGACCGTTG
CTTTTTCTTCACCCTTTTTAGGCTGGCGATCAGGGGGGCTGGGCCCGTTG
TTTCTGGACTTTTGATTTGCAACGGCCAATTGAGGTTGTTAGGTCGTCCT
CCCGCCCTCGATCATCTCGTCACGCACTCTCACGAAAGCCAAACCGAACG
CCCAAGGAGAGCGAGAGCTCGAAAAAATCGCTCGAGAAATCGCCCCTGTT
TTTCGCCCGCACCGATACACCCGAACGCAAAGAATTGCGTGATGATCGTG
TGCCGCCTCCCAGAGGTTTGATGTCGCCTGTGATCTCGCTCCTCCTTCAT
CGGTCCTCCTGAACTCGAACAGATATGGATTTGTTTGCATCCCCACAGCA
GTCTGGTTGTCTAATTCTACCAGCGCGCGGGCGAGTGTCAAAAACTTTCG
CACACACACCCGCGCATACAGTTGACCACAGGTCTGTGTGAAAGCGGCGA
GAGGGGAAATATGTGCAGCTGGTAATCGGGAGTATCTTTTTAACACACAC
CGCGCGAAATTCTGCTACGATGCTGTTGGGTGTTGGTCGTCTTCAGTGAT
GACGATGACCTGCTCCATAACTAGCGAGCATGAAGCCGAATCTCCGCCCA
TCCAAACATCTGAATGAGCGTTCATCGACGATGTCTCGCTGCAGTAGACC
GGTCGCCCCGATGGTCTAATAGCTGGTATCGTTGTAACCTTCTAGGGGTC
AGTAAACGAGTTCGAATCTCGACGTGCGCAAGCTGTTTCTTTCACTGTGA
GTTTTTTATCTTGCGTTTGTTTCTGGCAGTGGGTAGCGCTAGCTCGTGTG
TACACACCCTTGAGGGAAGAGAGTGCTGAACTCTTCTCGTTCAATTTGAA
GGCATGGACCGCAGGAGGGGGGGTTGGGGCCGTAGGGGGAAGAGACCTTC
TGTGTGACTTTGTGGCCACGGGTCTGAATTCTGGGTGCAGGCGTCTAGGA
ACGATGGTTTCACGCAATGAAAAATAAAAAATAAATATGAAAAGTGGGGA
ACTTCTCGAGCGGGTGCATGTTGACGATGTCGACACCTTTTGCGTACGCT
GGCACTCTTGAATCACCTCACTGCAATGTCTCTCCAGCCACCAACAGCTC
TAGGGAACAACCAATAGTATGCCATCTGCTTCGAGCGGCTGATGTTGTGG
CCCTCTGTTGCCGTTATTGTGCTCACCGTCGTCGACGACAAGGGGGACGC
TCAGGCGATGGCCTACTACAACAACGCCAACATGTACGGCGCCGGGGGCG
CCATCATGGGTCAAATGGGACAGATGCCGATCATGATGCACCCCCAGCTT
CAGCAGCAACAGCTTCATCTACAGCAACAGCAGCAACAGCCGGGAGTCGG
CGTCGGCGTTGTAAAACGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1616665..1619283-

>mRNA_P-fluviatile_contig13.1784.1 ID=mRNA_P-fluviatile_contig13.1784.1|Name=mRNA_P-fluviatile_contig13.1784.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig13:1616665..1619283- (Porterinema fluviatile SAG_2381)
ATGTCGAAATCTCCTGAGACTTCCCTCGACACTGGCATGATGGAGCAACA
GCAGCCGCAGCAAGTGTCACAGATGTCGAAATCTCCTGAGACTTCCCTCG
ACACTGGCATGATGGAGCAACAGCAGCCGCAGCAAGTGTCACAGGGGGAC
GCTCAGGCGATGGCCTACTACAACAACGCCAACATGTACGGCGCCGGGGG
CGCCATCATGGGTCAAATGGGACAGATGCCGATCATGATGCACCCCCAGC
TTCAGCAGCAACAGCTTCATCTACAGCAACAGCAGCAACAGCCGGGAGTC
GGCGTCGGCGTTGTAAAACGGGGGGACGCTCAGGCGATGGCCTACTACAA
CAACGCCAACATGTACGGCGCCGGGGGCGCCATCATGGGTCAAATGGGAC
AGATGCCGATCATGATGCACCCCCAGCTTCAGCAGCAACAGCTTCATCTA
CAGCAACAGCAGCAACAGCCGGGAGTCGGCGTCGGCGTTGTAAAACGG
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