mRNA_P-fluviatile_contig13.1783.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1783.1
Unique NamemRNA_P-fluviatile_contig13.1783.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1783.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 9.920e-15
Identity = 66/98 (67.35%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:  376 GDAMRA--AHYPQQWHGGDAAGLNGNMAAMLQXXXXXXXXXR-LHQQQPFAFMPHQSAGLYARDQRADQ---CDAASSPQXXXXXXLGQQIHQAWHLQ 651
            GDAMRA  AHYPQQWHGG++AGL GNMAA+  XXXXXXXXXR LH QQPFA++P QS G+Y RD RADQ           XXXXX LGQQ+HQ W LQ
Sbjct:  319 GDAMRASAAHYPQQWHGGESAGLGGNMAAIXXXXXXXXXXXRRLHPQQPFAYVPPQSTGVYGRDPRADQGGEVPXXXXXXXXXXXHLGQQLHQVWQLQ 416
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9E8_9PHAE9.920e-1567.35RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1610274..1613009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-12_000270.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1928
Cds size1482
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1783.1prot_P-fluviatile_contig13.1783.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1610336..1612625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.3348966-UTR-P-fluviatile_contig13:1610273..16103351622815535.3348966-UTR-P-fluviatile_contig13:1610273..1610335Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1610274..1610335 -
1693562169.5792897-UTR-P-fluviatile_contig13:1610273..16103351693562169.5792897-UTR-P-fluviatile_contig13:1610273..1610335Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1610274..1610335 -
1622815535.3839128-UTR-P-fluviatile_contig13:1612625..16130091622815535.3839128-UTR-P-fluviatile_contig13:1612625..1613009Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1612626..1613009 -
1693562170.8051941-UTR-P-fluviatile_contig13:1612625..16130091693562170.8051941-UTR-P-fluviatile_contig13:1612625..1613009Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1612626..1613009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.3477833-CDS-P-fluviatile_contig13:1610335..16112111622815535.3477833-CDS-P-fluviatile_contig13:1610335..1611211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1610336..1611211 -
1693562169.5923762-CDS-P-fluviatile_contig13:1610335..16112111693562169.5923762-CDS-P-fluviatile_contig13:1610335..1611211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1610336..1611211 -
1622815535.360645-CDS-P-fluviatile_contig13:1611381..16118611622815535.360645-CDS-P-fluviatile_contig13:1611381..1611861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1611382..1611861 -
1693562170.7774494-CDS-P-fluviatile_contig13:1611381..16118611693562170.7774494-CDS-P-fluviatile_contig13:1611381..1611861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1611382..1611861 -
1622815535.3733904-CDS-P-fluviatile_contig13:1612499..16126251622815535.3733904-CDS-P-fluviatile_contig13:1612499..1612625Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1612500..1612625 -
1693562170.7969792-CDS-P-fluviatile_contig13:1612499..16126251693562170.7969792-CDS-P-fluviatile_contig13:1612499..1612625Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1612500..1612625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1783.1

>prot_P-fluviatile_contig13.1783.1 ID=prot_P-fluviatile_contig13.1783.1|Name=mRNA_P-fluviatile_contig13.1783.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=494bp
MRAAHYPQQWHGGDAAGLNGNMAAMLQQQQQFMQQRRLHQQQPFAFMPHQ
SAGLYARDQRADQCDAASSPQQQQQQQLGQQIHQAWHLQQVQQHQHQHQQ
HQLQQHQLLQQQQIQQQQQQQQQHQLQPQQQTGKTGVVGVVGSSSTSAIG
ATNPMFQEWGQDQGGGIPHGPGNNQDPQPTAQAGQHTKNQIPLPMCLSGT
GQLQRDALAAVGDGGDVAGAISMARDVSSEAGQGAPGWERGGEQPKPSEQ
QQQRGGVDAGQPGSPGGARGPASYHDGGGGCGRVEGSAPRNDGSGHMGDK
EGGEGDGGKGGNAALSQQQHQGQRSLPGGGVGGGSSPRKGAFQHHQRQQS
LDGSGDSSPRDDRDDLSQHKHQKQRSLTAGCGGGGGGGGGGGNIGGGGGG
LPPSRDARDGMSQQQYRGQQSPNGGGGSASASRDSRGGPSLQHVKPGWVQ
TPSSSSSSVGGAGGARWPQRPLLPARRRRKRSSCAMPQTPEGG*
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mRNA from alignment at P-fluviatile_contig13:1610274..1613009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1783.1 ID=mRNA_P-fluviatile_contig13.1783.1|Name=mRNA_P-fluviatile_contig13.1783.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2736bp|location=Sequence derived from alignment at P-fluviatile_contig13:1610274..1613009- (Porterinema fluviatile SAG_2381)
GGAGAGAGAAGACAAGGGGTGGACGTCGTTGATTGTCACGGTTCCGGCAT
GGGTCGAGCGTGAAGCACTTGAGCACTTGTAGGATTGCGTTTCCTGCCTC
TTTTGTGCATGAGCGTGTGTGGTGAATCGGGTCTGTTTCTCTGTTGTCAT
CCGCTTTCTCCTTCAAAATTTGCTGCAGTAGTTGCTGCTGCTGTGGTCGC
TGCCCAATTTTGTGGTGTTTTGCTGCAGATGGTCAGTTTAACCCGAACTC
GCCTGTGACACACAAACACCGACCACCGCTTGCGTCATTTTGTTTTGTTT
TGTGCGTGTGTTTGCCAGTTGAACGGACTTGCCGCGTTTTTTCTCACTCT
GTCGACTCGGTTGACATGCACAGCAGGAGACGCGATGCGGGCGGCTCACT
ACCCGCAGCAGTGGCACGGCGGTGATGCGGCGGGACTGAACGGCAACATG
GCGGCCATGCTCCAGCAGCAGCAACAGTTCATGCAGCAGAGGCGCCTGCA
CCAGCAGCAGGTATTCCCGCCTGCACACGCGTTTTCCCTTTATTCGTCAC
TTAAGCGCTACTTTGTTGCATTTTTATTGGTCGGTCCAGATGCCAAGAAA
GTGCGCGGCGATGCGCGAGGCTTGCCGCAGTTGTGCGACCGGTGTAATGG
TTTACTGTCCGGCTGGATTCCGTATTAGGCGGCCCAAAGTCGCGCCATCG
TACTGCACACAGGTGTAAAATATTACCCCGTACGTTATTCGGGTGTGGCG
GCATGCCCCGAATAGCAGTTGCAAAGTCACAGGCACTGCTGTGTGTCTGC
CAGCTTAACCGGGACCACGACTGTAGTCAAGATCATGGGAACATCTGAAA
ATGGTGTTGACGGCGGGACCTGGTGTGTTGGTGTGCGCTATCTCCAGTGC
GTTGCATGATCTCACAACCCACCCAAGCCCAAACGTAAAACACGTCGCGT
GCCGCATGTCGCGCACCAACACGTGGCCCACTTCGGACCACTGCTGTGCG
CTGCTCTGTCGGAGCCGATGACGCTTCGAAACTCTACCCTCTTGGAGTCA
TGTGTTTTGCCTGATATCCTCCTCCCCCCCCTCCCTCTCCGCCTTTTCCT
CCTCTCGCGTTCATAAATGCTCACTCGTGCGTATCCTGCCAAATGCAGCC
TTTCGCGTTCATGCCCCACCAATCTGCCGGGCTGTACGCCCGGGATCAGC
GTGCGGATCAATGCGATGCCGCTTCTTCCCCGCAGCAACAGCAGCAGCAG
CAGTTGGGGCAACAGATTCACCAGGCATGGCACCTTCAGCAGGTGCAGCA
GCACCAGCACCAGCACCAGCAGCACCAGCTTCAGCAGCACCAGCTACTGC
AGCAACAGCAGATACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCTG
CAGCCGCAGCAGCAGACCGGGAAAACTGGCGTTGTTGGCGTCGTTGGCAG
CAGCAGCACCAGTGCCATCGGTGCCACAAACCCGATGTTTCAGGAGTGGG
GGCAAGACCAGGGCGGGGGAATTCCCCACGGGCCCGGCAACAACCAAGAT
CCCCAACCGACGGCGCAGGCTGGCCAGCACACGAAGAACCAGATCCCGTT
GCCTATGTGTCTGTCCGGCACCGGCCAGGTAAACATCGAAAAGATGTCCG
ATCGAACCCCTGTGGTATCTCGAGCGCTTTTTCCGCTCCTCCGACGGAAT
TGGTTCTCTTCCGACAATATTTTGCACAGTATGTGGCCGTGACACCGACG
CACCGCGGACTGTACCCCATTCCGCTTTGTTGTTGTCATTTGAACCAGTT
ACAGCGAGACGCCCTTGCTGCTGTTGGCGACGGTGGAGATGTCGCTGGAG
CGATCTCCATGGCGCGCGACGTTTCGTCTGAGGCTGGACAGGGGGCGCCC
GGGTGGGAACGCGGGGGGGAGCAGCCGAAGCCTTCAGAGCAGCAGCAACA
AAGAGGCGGGGTCGACGCAGGGCAGCCCGGTTCGCCTGGTGGGGCACGAG
GCCCCGCCTCGTATCACGACGGTGGTGGTGGCTGCGGAAGGGTGGAGGGC
TCGGCGCCCAGGAACGATGGATCTGGGCACATGGGAGACAAGGAGGGTGG
GGAGGGGGACGGAGGAAAGGGAGGAAATGCGGCACTTTCTCAACAACAGC
ACCAAGGGCAGCGATCGCTTCCCGGCGGCGGCGTTGGCGGCGGATCGTCA
CCGCGTAAAGGTGCGTTCCAGCATCATCAACGGCAGCAATCACTTGACGG
CAGCGGCGATTCGTCACCTCGTGACGACCGGGATGACCTATCGCAGCACA
AGCACCAAAAGCAGCGATCACTCACTGCCGGCTGCGGTGGCGGTGGCGGT
GGCGGTGGCGGTGGTGGTAACATTGGCGGTGGCGGTGGCGGCCTCCCGCC
ATCGCGCGATGCAAGGGACGGCATGTCCCAGCAGCAATACCGAGGGCAGC
AGTCGCCCAACGGCGGCGGCGGCAGCGCATCGGCATCGCGCGACTCTAGG
GGAGGCCCATCCCTGCAGCATGTCAAGCCTGGGTGGGTTCAAACACCCTC
GTCTTCCTCCTCATCCGTCGGCGGCGCCGGCGGCGCTAGATGGCCGCAGC
GCCCGCTTCTTCCGGCTCGACGGCGGAGGAAGCGGAGCTCTTGTGCGATG
CCGCAGACGCCGGAAGGCGGATAGCCGAGACCGCGAACTGCGGTCAAGCC
AGCAATGGTTCGATGAACGGCGGATTCTTCAGTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1610274..1613009-

>mRNA_P-fluviatile_contig13.1783.1 ID=mRNA_P-fluviatile_contig13.1783.1|Name=mRNA_P-fluviatile_contig13.1783.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2964bp|location=Sequence derived from alignment at P-fluviatile_contig13:1610274..1613009- (Porterinema fluviatile SAG_2381)
ATGCGGGCGGCTCACTACCCGCAGCAGTGGCACGGCGGTGATGCGGCGGG
ACTGAACGGCAACATGGCGGCCATGCTCCAGCAGCAGCAACAGTTCATGC
AGCAGAGGCGCCTGCACCAGCAGCAGATGCGGGCGGCTCACTACCCGCAG
CAGTGGCACGGCGGTGATGCGGCGGGACTGAACGGCAACATGGCGGCCAT
GCTCCAGCAGCAGCAACAGTTCATGCAGCAGAGGCGCCTGCACCAGCAGC
AGCCTTTCGCGTTCATGCCCCACCAATCTGCCGGGCTGTACGCCCGGGAT
CAGCGTGCGGATCAATGCGATGCCGCTTCTTCCCCGCAGCAACAGCAGCA
GCAGCAGTTGGGGCAACAGATTCACCAGGCATGGCACCTTCAGCAGGTGC
AGCAGCACCAGCACCAGCACCAGCAGCACCAGCTTCAGCAGCACCAGCTA
CTGCAGCAACAGCAGATACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCA
GCTGCAGCCGCAGCAGCAGACCGGGAAAACTGGCGTTGTTGGCGTCGTTG
GCAGCAGCAGCACCAGTGCCATCGGTGCCACAAACCCGATGTTTCAGGAG
TGGGGGCAAGACCAGGGCGGGGGAATTCCCCACGGGCCCGGCAACAACCA
AGATCCCCAACCGACGGCGCAGGCTGGCCAGCACACGAAGAACCAGATCC
CGTTGCCTATGTGTCTGTCCGGCACCGGCCAGCCTTTCGCGTTCATGCCC
CACCAATCTGCCGGGCTGTACGCCCGGGATCAGCGTGCGGATCAATGCGA
TGCCGCTTCTTCCCCGCAGCAACAGCAGCAGCAGCAGTTGGGGCAACAGA
TTCACCAGGCATGGCACCTTCAGCAGGTGCAGCAGCACCAGCACCAGCAC
CAGCAGCACCAGCTTCAGCAGCACCAGCTACTGCAGCAACAGCAGATACA
GCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCTGCAGCCGCAGCAGCAGA
CCGGGAAAACTGGCGTTGTTGGCGTCGTTGGCAGCAGCAGCACCAGTGCC
ATCGGTGCCACAAACCCGATGTTTCAGGAGTGGGGGCAAGACCAGGGCGG
GGGAATTCCCCACGGGCCCGGCAACAACCAAGATCCCCAACCGACGGCGC
AGGCTGGCCAGCACACGAAGAACCAGATCCCGTTGCCTATGTGTCTGTCC
GGCACCGGCCAGTTACAGCGAGACGCCCTTGCTGCTGTTGGCGACGGTGG
AGATGTCGCTGGAGCGATCTCCATGGCGCGCGACGTTTCGTCTGAGGCTG
GACAGGGGGCGCCCGGGTGGGAACGCGGGGGGGAGCAGCCGAAGCCTTCA
GAGCAGCAGCAACAAAGAGGCGGGGTCGACGCAGGGCAGCCCGGTTCGCC
TGGTGGGGCACGAGGCCCCGCCTCGTATCACGACGGTGGTGGTGGCTGCG
GAAGGGTGGAGGGCTCGGCGCCCAGGAACGATGGATCTGGGCACATGGGA
GACAAGGAGGGTGGGGAGGGGGACGGAGGAAAGGGAGGAAATGCGGCACT
TTCTCAACAACAGCACCAAGGGCAGCGATCGCTTCCCGGCGGCGGCGTTG
GCGGCGGATCGTCACCGCGTAAAGGTGCGTTCCAGCATCATCAACGGCAG
CAATCACTTGACGGCAGCGGCGATTCGTCACCTCGTGACGACCGGGATGA
CCTATCGCAGCACAAGCACCAAAAGCAGCGATCACTCACTGCCGGCTGCG
GTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGTAACATTGGCGGTGGCGGT
GGCGGCCTCCCGCCATCGCGCGATGCAAGGGACGGCATGTCCCAGCAGCA
ATACCGAGGGCAGCAGTCGCCCAACGGCGGCGGCGGCAGCGCATCGGCAT
CGCGCGACTCTAGGGGAGGCCCATCCCTGCAGCATGTCAAGCCTGGGTGG
GTTCAAACACCCTCGTCTTCCTCCTCATCCGTCGGCGGCGCCGGCGGCGC
TAGATGGCCGCAGCGCCCGCTTCTTCCGGCTCGACGGCGGAGGAAGCGGA
GCTCTTGTGCGATGCCGCAGACGCCGGAAGGCGGATAGTTACAGCGAGAC
GCCCTTGCTGCTGTTGGCGACGGTGGAGATGTCGCTGGAGCGATCTCCAT
GGCGCGCGACGTTTCGTCTGAGGCTGGACAGGGGGCGCCCGGGTGGGAAC
GCGGGGGGGAGCAGCCGAAGCCTTCAGAGCAGCAGCAACAAAGAGGCGGG
GTCGACGCAGGGCAGCCCGGTTCGCCTGGTGGGGCACGAGGCCCCGCCTC
GTATCACGACGGTGGTGGTGGCTGCGGAAGGGTGGAGGGCTCGGCGCCCA
GGAACGATGGATCTGGGCACATGGGAGACAAGGAGGGTGGGGAGGGGGAC
GGAGGAAAGGGAGGAAATGCGGCACTTTCTCAACAACAGCACCAAGGGCA
GCGATCGCTTCCCGGCGGCGGCGTTGGCGGCGGATCGTCACCGCGTAAAG
GTGCGTTCCAGCATCATCAACGGCAGCAATCACTTGACGGCAGCGGCGAT
TCGTCACCTCGTGACGACCGGGATGACCTATCGCAGCACAAGCACCAAAA
GCAGCGATCACTCACTGCCGGCTGCGGTGGCGGTGGCGGTGGCGGTGGCG
GTGGTGGTAACATTGGCGGTGGCGGTGGCGGCCTCCCGCCATCGCGCGAT
GCAAGGGACGGCATGTCCCAGCAGCAATACCGAGGGCAGCAGTCGCCCAA
CGGCGGCGGCGGCAGCGCATCGGCATCGCGCGACTCTAGGGGAGGCCCAT
CCCTGCAGCATGTCAAGCCTGGGTGGGTTCAAACACCCTCGTCTTCCTCC
TCATCCGTCGGCGGCGCCGGCGGCGCTAGATGGCCGCAGCGCCCGCTTCT
TCCGGCTCGACGGCGGAGGAAGCGGAGCTCTTGTGCGATGCCGCAGACGC
CGGAAGGCGGATAG
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