mRNA_P-fluviatile_contig13.1776.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1776.1
Unique NamemRNA_P-fluviatile_contig13.1776.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 1.420e-129
Identity = 200/255 (78.43%), Postives = 220/255 (86.27%), Query Frame = 1 
Query:    1 MIGIAFALALIVAASSSVSGFILPVSTPLT--VASRAAHQVRSRVAPRRAEETDPAA--DPRIKEMPKYRDRPNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKAEE 753
            M G A    ++ A SSSVS F +PV T  T  VASR   +  + VAPRRA E D AA  DPR+KEMPK RDRP+KYTG+CFVVKDNIDTDQIIPAEYLTLVP+ A+EYEKLGSYAMIGLPDVY  RYVEEG+++T+YPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSI+TGELYPYEC++RLVD FTTGD+VTVDLTTDTL N+TTGKEY LNPLGDAGPVI AGGLFPYAIKTGMIKK +E
Sbjct:    2 MWGFATTATMVAAVSSSVSAFFVPVPTAGTTAVASRPGCKSSAGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNANEYEKLGSYAMIGLPDVYTTRYVEEGSMATRYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDAFTTGDDVTVDLTTDTLINHTTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKKMDE 256
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 2.040e-118
Identity = 182/251 (72.51%), Postives = 209/251 (83.27%), Query Frame = 1 
Query:    1 MIGIAFALALIVAASSSVSGFILPVSTPLTVASRAAHQVRSRVAPRRAEETDPAADPRIKEMPKYRDRPNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKAEE 753
            M+G A AL ++ + +S    F+ P+S     A+R A Q  S VA + A   D   DPR KEMPK+R+RP KYTG CFVVKDNIDTDQIIPAEYLTLVP+KADEYEKLGSYAMIGLP VYK R+VEEG++ T+YPI+IAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSI+TGELYPYEC++RLVD+  TGDE+TVDL+TDTLTN+ +GKEY L PLGDA PVI AGGLFP+AI+TGMIKK EE
Sbjct:    3 MLGFAVALTMVASVTSRAGAFVPPISAAGAAATRPACQ--SSVARQAAASDD--MDPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPSVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDIIKTGDELTVDLSTDTLTNHASGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKKLEE 249
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A0A7N0U1F4_KALFE (Aconitase_C domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1F4_KALFE)

HSP 1 Score: 256 bits (655), Expect = 1.580e-82
Identity = 122/175 (69.71%), Postives = 150/175 (85.71%), Query Frame = 1 
Query:  214 YTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMI 738
            + G C+VVKDNIDTDQIIPAEYLTLVP+K DEY+KLGSYAMIGLP+ Y+ R++E G   T+Y I+IAGDNFGCGSSREHAP+ALGAAG + VVAESYARIFFRNS++TGE+YP EC+ R+ D  +TGD VT++L  + L N++TGKE++L P+GDAGPVI+AGG+F YA KTGMI
Sbjct:   82 FHGVCYVVKDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYAMIGLPESYRTRFIEPGESETKYSIVIAGDNFGCGSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEIYPLECEGRICDECSTGDVVTIELKENKLINHSTGKEFALKPIGDAGPVIEAGGIFAYARKTGMI 256
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A6XGU6_9CHLO (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A6XGU6_9CHLO)

HSP 1 Score: 253 bits (647), Expect = 1.810e-82
Identity = 126/178 (70.79%), Postives = 147/178 (82.58%), Query Frame = 1 
Query:  217 TGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPD-VYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKA 747
            TGKCFV KDNIDTDQIIPAEYLTLVP+K DEYEKLGSYA+IGLPD +YK R+V++G + T YPIII G NFGCGSSREHAP+A+GAAG RVVVAESYARIFFRN +STGELYP E + RL D+  T  EVTVD+  + LT+++ GK Y L P+G+AGPV+ AGG+F YA K GMIK A
Sbjct:    5 TGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDLYKTRFVKDGKMKTDYPIIIGGQNFGCGSSREHAPVAIGAAGGRVVVAESYARIFFRNCMSTGELYPCETELRLCDILKTDSEVTVDMDKNILTDHSNGKVYDLKPIGEAGPVVDAGGIFEYARKHGMIKTA 182
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A0A7J7Q700_9CHLO (Small subunit of isopropylmalate dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q700_9CHLO)

HSP 1 Score: 254 bits (650), Expect = 1.860e-82
Identity = 127/183 (69.40%), Postives = 146/183 (79.78%), Query Frame = 1 
Query:  199 DRPNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKA 747
            D P    G CFV KDNIDTDQIIPAEYLTLVP+K DEYEKLGSYA+IGLPD Y  ++VEEG + T+Y +II G NFGCGSSREHAP+ALGAAG++VVVAESYARIFFRN +STGELYP E   R+ +   TG++VTVD+  + L N+TTGKEY L  LGDAGPVI AGGLF YA + GMIK A
Sbjct:   31 DAPRIVRGTCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDEYTTKFVEEGEMKTKYKVIIGGQNFGCGSSREHAPVALGAAGSQVVVAESYARIFFRNCMSTGELYPVETDVRVCEELNTGEDVTVDMEANVLINHTTGKEYQLKALGDAGPVIDAGGLFDYARQQGMIKSA 213
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A0A2V0PDB4_9CHLO (Isopropylmalate small subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PDB4_9CHLO)

HSP 1 Score: 254 bits (649), Expect = 2.550e-82
Identity = 134/214 (62.62%), Postives = 161/214 (75.23%), Query Frame = 1 
Query:  103 AAHQVRSRVAPRRAEETDPAADPRIKEMPKYRDRPNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPD-VYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIK 741
            A  Q+  R A RRA   +  A  R +  P+         GKC+V KDNIDTDQIIPAEYLTLVP+K DEYEKLGSYA+IGLPD +Y  R+V++G + T+YP+II G+NFGCGSSREHAP+ALGA+G++VVVA+SYARIFFRN ISTGELYP E   RL D   TG +VTVD+  D L N+TTGKEY L P+G+AGPVI AGG+F +A K GMIK
Sbjct:    3 AKQQLACRPAARRAVRVEAKAPQRPEGAPRI------VRGKCYVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDLYTTRFVKDGEMKTEYPVIIGGENFGCGSSREHAPVALGASGSQVVVAQSYARIFFRNCISTGELYPVETDVRLCDELATGQDVTVDMERDVLINHTTGKEYVLKPIGEAGPVIDAGGIFEFARKQGMIK 210
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A8HYG8_CHLRE (Isopropylmalate dehydratase, small subunit n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8HYG8_CHLRE)

HSP 1 Score: 253 bits (645), Expect = 1.070e-81
Identity = 128/182 (70.33%), Postives = 146/182 (80.22%), Query Frame = 1 
Query:  205 PNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPD-VYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKA 747
            P    GKCFV KDNIDTDQIIPAEYLTLVP+K DEYEKLGSYA+IGLPD  Y  RYV+EG + T+YPIII G NFGCGSSREHAP+ALGAAGA+V VAESYARIFFRN I+TGELYP E   RL D   TG EVTVD+  + LT+++TGK Y+L  +G+AGPVI AGG+F YA + GMIK A
Sbjct:   33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKEGEMKTEYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETTVRLCDELKTGSEVTVDMDANVLTDHSTGKTYNLQEIGEAGPVIDAGGIFEYARRQGMIKTA 214
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: A0A836BR91_9CHLO (Aconitase_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BR91_9CHLO)

HSP 1 Score: 253 bits (645), Expect = 1.070e-81
Identity = 131/204 (64.22%), Postives = 155/204 (75.98%), Query Frame = 1 
Query:  142 AEETDPAADPRIKEMPKYRDRPNK---YTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDV-YKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIK 741
            A +  PA    ++   K   +PN+     GKCFV KDNIDTDQIIPAEYLTLVP+K DEYEKLGSYA+IGLPDV Y  RYV +G++ T+YP+II G NFGCGSSREHAP+ALGAAGA+V VAESYARIFFRN I+TGELYP E   RL D+  TG EVTVD+  + LT+++TGK Y L  +GDAGPVI AGG+F +A   GMIK
Sbjct:    9 ARQARPARRSTVRVCAKVDKKPNEPRIIRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDVEYPTRYVNDGSMKTEYPVIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETDVRLCDVLKTGSEVTVDMEANVLTDHSTGKTYKLQDIGDAGPVIDAGGIFEFARAAGMIK 212
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: D8SLS4_SELML (Aconitase_C domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SLS4_SELML)

HSP 1 Score: 251 bits (641), Expect = 1.740e-81
Identity = 126/184 (68.48%), Postives = 152/184 (82.61%), Query Frame = 1 
Query:  199 DRPNKY-TGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKA 747
            D P++  +GKCFVV+DNIDTDQIIPAEYLTLVP+K DEYEKLGSYAM GLP  Y + ++E G   T+Y IIIAG NFGCGSSREHAP+ALGA+G +VVVAESYARIFFRNS++TGE+YP EC+ R+ D F  GD+VTVD+  D + N++TGKEY+L PLGDA PVI+AGG+F YA +TGMI  A
Sbjct:    4 DTPSRQISGKCFVVRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMAGLPPHYGQ-FMEPGKSKTKYSIIIAGSNFGCGSSREHAPVALGASGIQVVVAESYARIFFRNSVATGEMYPVECEARICDEFHNGDDVTVDMERDVVVNHSTGKEYALKPLGDAAPVIEAGGIFAYARQTGMIPSA 186
[Close]
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Match: UPI002009A417 (3-isopropylmalate dehydratase small subunit 1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A417)

HSP 1 Score: 251 bits (641), Expect = 1.740e-81
Identity = 123/177 (69.49%), Postives = 143/177 (80.79%), Query Frame = 1 
Query:  208 NKYTGKCFVVKDNIDTDQIIPAEYLTLVPTKADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDEVTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMI 738
            N + G C+VV DNIDTDQIIPAEYLTLVP+  DEYEKLGSYA+IGLP  Y+ R+VE GA  T+Y I+I GDNFGCGSSREHAP+ALGAAG   VVAESYARIFFRNS++TGE+YP E + RL +  TTGD VT++L    L N+TTGKEY L P+GDAGPVI+AGG+F YA K GMI
Sbjct:    6 NTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYESRFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCEECTTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKAGMI 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPR9_9PHAE1.420e-12978.43Aconitase_C domain-containing protein n=2 Tax=Ecto... [more]
B7ZGN7_9PHAE2.040e-11872.513-isopropylmalate dehydratase (Fragment) n=1 Tax=L... [more]
A0A7N0U1F4_KALFE1.580e-8269.71Aconitase_C domain-containing protein n=2 Tax=Kala... [more]
A6XGU6_9CHLO1.810e-8270.793-isopropylmalate dehydratase (Fragment) n=1 Tax=P... [more]
A0A7J7Q700_9CHLO1.860e-8269.40Small subunit of isopropylmalate dehydratase n=1 T... [more]
A0A2V0PDB4_9CHLO2.550e-8262.62Isopropylmalate small subunit n=1 Tax=Raphidocelis... [more]
A8HYG8_CHLRE1.070e-8170.33Isopropylmalate dehydratase, small subunit n=4 Tax... [more]
A0A836BR91_9CHLO1.070e-8164.22Aconitase_C domain-containing protein n=1 Tax=Edap... [more]
D8SLS4_SELML1.740e-8168.48Aconitase_C domain-containing protein n=3 Tax=Sela... [more]
UPI002009A4171.740e-8169.493-isopropylmalate dehydratase small subunit 1-like... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1562354..1566266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.5
Seed ortholog evalue4.9e-102
Seed eggNOG ortholog2880.D8LRK8
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01704,ko:K21359
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009657,GO:0009658,GO:0009987,GO:0016043,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0048229,GO:0048856,GO:0050896,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659
EggNOG free text desc.3-isopropylmalate dehydratase activity
EggNOG OGsCOG0065@1,KOG0454@2759
EC4.2.1.170,4.2.1.33,4.2.1.35
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog description3-isopropylmalate dehydratase
Ec32 orthologEc-12_000170.1
Exons7
Model size756
Cds size756
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.00335-CDS-P-fluviatile_contig13:1562353..15624631622815561.00335-CDS-P-fluviatile_contig13:1562353..1562463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1562354..1562463 -
1693562245.4762964-CDS-P-fluviatile_contig13:1562353..15624631693562245.4762964-CDS-P-fluviatile_contig13:1562353..1562463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1562354..1562463 -
1622815561.0151174-CDS-P-fluviatile_contig13:1563571..15636741622815561.0151174-CDS-P-fluviatile_contig13:1563571..1563674Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1563572..1563674 -
1693562245.861849-CDS-P-fluviatile_contig13:1563571..15636741693562245.861849-CDS-P-fluviatile_contig13:1563571..1563674Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1563572..1563674 -
1622815561.0281584-CDS-P-fluviatile_contig13:1564138..15642341622815561.0281584-CDS-P-fluviatile_contig13:1564138..1564234Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1564139..1564234 -
1693562245.8809733-CDS-P-fluviatile_contig13:1564138..15642341693562245.8809733-CDS-P-fluviatile_contig13:1564138..1564234Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1564139..1564234 -
1622815561.0405593-CDS-P-fluviatile_contig13:1564539..15646161622815561.0405593-CDS-P-fluviatile_contig13:1564539..1564616Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1564540..1564616 -
1693562245.8960936-CDS-P-fluviatile_contig13:1564539..15646161693562245.8960936-CDS-P-fluviatile_contig13:1564539..1564616Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1564540..1564616 -
1622815561.0511587-CDS-P-fluviatile_contig13:1564999..15650691622815561.0511587-CDS-P-fluviatile_contig13:1564999..1565069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1565000..1565069 -
1693562245.9040978-CDS-P-fluviatile_contig13:1564999..15650691693562245.9040978-CDS-P-fluviatile_contig13:1564999..1565069Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1565000..1565069 -
1622815561.0673864-CDS-P-fluviatile_contig13:1565776..15659561622815561.0673864-CDS-P-fluviatile_contig13:1565776..1565956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1565777..1565956 -
1693562245.911771-CDS-P-fluviatile_contig13:1565776..15659561693562245.911771-CDS-P-fluviatile_contig13:1565776..1565956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1565777..1565956 -
1622815561.085822-CDS-P-fluviatile_contig13:1566146..15662661622815561.085822-CDS-P-fluviatile_contig13:1566146..1566266Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1566147..1566266 -
1693562245.9218667-CDS-P-fluviatile_contig13:1566146..15662661693562245.9218667-CDS-P-fluviatile_contig13:1566146..1566266Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1566147..1566266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1776.1prot_P-fluviatile_contig13.1776.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1562354..1566266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1776.1

>prot_P-fluviatile_contig13.1776.1 ID=prot_P-fluviatile_contig13.1776.1|Name=mRNA_P-fluviatile_contig13.1776.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=252bp
MIGIAFALALIVAASSSVSGFILPVSTPLTVASRAAHQVRSRVAPRRAEE
TDPAADPRIKEMPKYRDRPNKYTGKCFVVKDNIDTDQIIPAEYLTLVPTK
ADEYEKLGSYAMIGLPDVYKKRYVEEGALSTQYPIIIAGDNFGCGSSREH
APIALGAAGARVVVAESYARIFFRNSISTGELYPYECKQRLVDLFTTGDE
VTVDLTTDTLTNNTTGKEYSLNPLGDAGPVIKAGGLFPYAIKTGMIKKAE
E*
back to top

mRNA from alignment at P-fluviatile_contig13:1562354..1566266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1776.1 ID=mRNA_P-fluviatile_contig13.1776.1|Name=mRNA_P-fluviatile_contig13.1776.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3913bp|location=Sequence derived from alignment at P-fluviatile_contig13:1562354..1566266- (Porterinema fluviatile SAG_2381)
ATGATCGGTATCGCTTTTGCCTTAGCTTTAATAGTCGCAGCTTCGTCATC
AGTATCTGGATTCATCCTGCCAGTTTCCACACCATTGACCGTGGCGTCGA
GAGCTGCTCACCAAGTGCGTGTGTGCCGTAACATGTTTGTGCCTCCGGCG
GAGCCGCACATCGTTGTCCGTCGTGTTGTGTGTGCTGTGCGTAGTAGACG
CAGCAGGAAGGGGAAGGAAAGTCTACAACTTCGGATGCTGACTCTATCAC
AAGTCTCTCCTCCTCATCCACCACCGCCTGTCGCCTCCCTTGCTTTCGCG
ACCACAACAGTCCCGCGTGGCACCAAGACGAGCGGAGGAGACAGATCCAG
CAGCTGACCCTCGTATAAAGGAGATGCCCAAGTACAGGGACAGGCCAAAC
AAGTACACGGGGAAGTGCTTCGTGGTAAAGGACAACATTGACACCGATCA
GATCATTCCGGCGGAGTACCTTACTCTCGTTCCGACAAAGGTGACTTCTA
TGGTTGTAAGATGGATTTGCTATCAGGGTATTTTGTTATCATGTGCCGGC
CGGACTCCGAACCTGCGCGTTCCCTTGGCCCGATACGAGAGCTGCAGGGA
GAAAAGTCCCGCAAACAGGAAATGCTTGCGCGCAGCGGGTTGACGACTTC
AGTGGTTAGCAAATTAATACACGAGTCTTCGTCTTCTGCTGGTGCATGCG
CAAATGTATCACCTCGCTCTCATGCTTAGCTCACGGGCAAGTAGCGTGCT
GTTTGTCATGTGTACTGGCTTGACGTGGATAGCAACATGCCGTATCCTCG
CGTGCTGCCTCGAGAGGCAAAGAAAAGTTTACGTTTCGCGGCGAGATGGG
ATACACACGGTCCTGGTATGATCTTGGCCAAGTCTCGATGTCTGACCGCT
TTAGACGAGTTGTGCAAAAGAACGGACGTTCGACTGAACGAGTGTGTGCG
TGAGGTGCTTGAATTCGGCGGCGCTGCAGCAGGTCGCACAACGTCACACG
AACTACAGTTGTCCTCCTTTTTCGGCCTTCACGCGCGGCGGGTGCCCTGT
GCCAAACTGCGTGGACCTCTTCCAAGACGGCAGTCGCCCCCCCTTCTCCC
ATTCAGGCACAAGAGTTATTCACGCCAGACCGACTCCCCTCTCGCCGGAA
ATAGATTGGCTGACCCGGCCCACTGGATGACAAACCAAATTGCACAGGCC
GATGAGTACGAGAAGTTGGGATCATACGCTATGATCGGGCTACCCGATGT
GTACAAGAAACGCTATGGTGAGAGTTTTGTCGTCAACTGAATTTCGTGCT
GCGGCCGCCGAGTGAGTCCCACCGCGTTTTGCCTCTCCCTAGAAAGCAAA
TAGAGACCCCATGTACAAGCAAATCTGAGCTCTACAACACGGTGTGCGCC
CTGTATGATCCGTGCACCTCCGTTGGTGAGTGTCGCAAGGCGATTTTGAT
GGATGGCAATTAACGCCCCACACGCAAAAATTCTGATAATGGCAGAAAGC
AGGTGCTGCTGCACCAGCAGACGGCGGGGTCGGGTATGGCAGGGTAGTAG
TCTGGCATCCGGCTGCATCCATCCGTTTATGATCGGATCATCACCCGCGG
TTTGTTGCTCTCATTTCAATCTCTCTGCCGCGACGTGACGACACCAACAG
TGGAGGAGGGAGCTTTGTCGACCCAGTACCCCATCATCATCGCCGGCGAC
AACTTCGGCTGCGGGTCTTCGCGAGAGGTGCGACCTTTCCTACCTTCGCG
TCAACCCTTTGCCCTCGCCCCCACCGTGATGTGGTACCAACAGAGTGCGG
AGCAGTGTAATACCACCAAAGTCGTTGCTCGACCTTGGTGCAGCATTTAT
CTCAAGTCACGCGCTCTGAAGTGTGACTCCTGACTCCTGATTGTACTTCT
ACACTGCTATACCCCCGTGAAATGTTCATGATTGTTTCCGCCGGTCCGTC
CACGGCGACCAAGCCGCATTGATATATTCTGATCTTGTGCCTTTCGTGTG
TCACCGTGTTTGTCTCTTGCTCCCGCACGCAGCACGCACCGATCGCTTTG
GGGGCCGCGGGAGCTCGGGTCGTGGTGGCGGAGTCGTACGCACGAATTTT
CTTCCGCAATTCCATATCCACTGGGGAGGTTAGCTTGTTGTTTGTCCCAA
TCGGCTACCTGTTTGTGGTGAAGTGCTTGAAGTTTCCCAAAAGTGACAGG
CGTTGACTGATGGCTCAGTGGATGTGTGCATGCACGTCTGTTATAAATCA
GATTTCTGGTGTTTGGGAGCGTTTTTTTAATGCTGTCTTCTTGATATCAT
GATGGCACAATCTTTTGCTCGAGGATGATGGCCACGGGTCTTGAGTGGTT
CCAGATTCAAAAGCATCAGACGAGAGGAGCAGTTGTGTACGCTTATCCAT
TTCTCTCCCCGGTTTATCTTTTCCCTTGGGGCTAACTGCTGCTTTTTTGT
CAATACGCCGGACGCTGGAAGTGCGTACCGTTCCCCCACCCCCCCCGTCC
TTCACACACAGAAGCGGTAGCACTTGAGCCATGTTTGTCATTTTCCTCGT
GTTGCACCAACGCACGTGATTGCTCGCTCTCTCGGTTGCCAGCTGTACCC
GTACGAGTGTAAACAACGCTTGGTGGACCTCTTCACCACCGGAGACGAGG
TCACAGTGGACCTGACGACGGACACTTTGACCAACAACACCACCGGTGAG
AATTGAAAGCTCTCACCGTCTCTTCGAGAAGCTGCGGTTCGTGGGTAATC
ACCACGCACCCGACTTCTTCCTCCGTGTTTGGGCTTTTCTTCTTGCGTGG
GTCAGCCCTCACAAGCGATCATCCTTCGACCGACTTGCTGCCGATCAACA
CAACACCACTGGTTTTTGTTTAAAGGAGTGCTGTAAGCTGAGGGACCCAT
CGTGGTGGAAAGATCCGCTCGGAGAAGCGAGGCACGCAACAGGCCAGTGG
GCAACTACATTCTTGCACAATATCTGTGGTTAAACCACGGCAAGCTCGAA
AATTCCGCTTGGGGTTCAAGCCTTCGAATAGACATGGAAGCGAAGCGATC
CGTGTAGAGATGGGCTTAGTGCAGGAGTATTGTGCCCAAGATCAGCCTAT
GCGCGTTGTTCCCGCGCCTGGCTGTGCTGTCTACCACCTCCGTTTGGGCT
GGCGATCTTGACTTTTGTTCGGATATTGATCAACTTCCATCACGACAGCT
CTGAGCAGGCTAACCTTCGGTTGGAAAATATCTCGCTGCGAGATACTGAA
GCAGTCCGCGTTGTTTTTTTTAGTCTCCGGGGTGTGGGGTTACGAGGGGG
AGGAGGGGGGACCCGGACGAATTTGTGTAACCAGCACCAAGCTTGGTTGA
AGAGCTCTTGCTTTTGTCTCGAGATGATTGCCGCGATCTTGTTATCCAAA
TTCTCCGCTGCTTCTTCGTACGTGTGCCACCACCCCGCTCACCGCCCCAT
GAAAGTCTTGAGTGGACGTGTTGGCAGCAGTCATTTTGTCGGCGCACTCG
TGGAGAAAGGCCGCGTGACACACCGCCTTGCTTGTCTCATTTCGGGACGA
TGCTGAATCCACTCGTCGTTCCACACACCCGGACGCCGGTGCTACCTTGC
GGAATCGCGTGATCCATGTCCCCTTACCGACCTCCACACGTGGCAGCAGC
GGCAGACGAGTACCTTACCGTCAGCCTCCTGGTTCTTGAGCAATTTGCCT
CGGGTATCCACCATATCCATGGCAGGGCTATATCCCCCCCCCCTAGTGTA
CCTGGGCCTGACACCATCGGCGACTGTCTGACTCGCACGGTAATCGAAAA
CAGGAAAGGAGTACTCGCTCAACCCGCTGGGAGACGCCGGGCCGGTAATC
AAAGCCGGGGGCTTGTTTCCCTACGCAATCAAGACAGGCATGATCAAGAA
GGCTGAGGAATGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:1562354..1566266-

>mRNA_P-fluviatile_contig13.1776.1 ID=mRNA_P-fluviatile_contig13.1776.1|Name=mRNA_P-fluviatile_contig13.1776.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1512bp|location=Sequence derived from alignment at P-fluviatile_contig13:1562354..1566266- (Porterinema fluviatile SAG_2381)
ATGATCGGTATCGCTTTTGCCTTAGCTTTAATAGTCGCAGCTTCGTCATC
AGTATCTGGATTCATCCTGCCAGTTTCCACACCATTGACCGTGGCGTCGA
GAGCTGCTCACCAAGTGCGTATGATCGGTATCGCTTTTGCCTTAGCTTTA
ATAGTCGCAGCTTCGTCATCAGTATCTGGATTCATCCTGCCAGTTTCCAC
ACCATTGACCGTGGCGTCGAGAGCTGCTCACCAAGTGCGTTCCCGCGTGG
CACCAAGACGAGCGGAGGAGACAGATCCAGCAGCTGACCCTCGTATAAAG
GAGATGCCCAAGTACAGGGACAGGCCAAACAAGTACACGGGGAAGTGCTT
CGTGGTAAAGGACAACATTGACACCGATCAGATCATTCCGGCGGAGTACC
TTACTCTCGTTCCGACAAAGTCCCGCGTGGCACCAAGACGAGCGGAGGAG
ACAGATCCAGCAGCTGACCCTCGTATAAAGGAGATGCCCAAGTACAGGGA
CAGGCCAAACAAGTACACGGGGAAGTGCTTCGTGGTAAAGGACAACATTG
ACACCGATCAGATCATTCCGGCGGAGTACCTTACTCTCGTTCCGACAAAG
GCCGATGAGTACGAGAAGTTGGGATCATACGCTATGATCGGGCTACCCGA
TGTGTACAAGAAACGCTATGGCCGATGAGTACGAGAAGTTGGGATCATAC
GCTATGATCGGGCTACCCGATGTGTACAAGAAACGCTATGTGGAGGAGGG
AGCTTTGTCGACCCAGTACCCCATCATCATCGCCGGCGACAACTTCGGCT
GCGGGTCTTCGCGAGAGTGGAGGAGGGAGCTTTGTCGACCCAGTACCCCA
TCATCATCGCCGGCGACAACTTCGGCTGCGGGTCTTCGCGAGAGCACGCA
CCGATCGCTTTGGGGGCCGCGGGAGCTCGGGTCGTGGTGGCGGAGTCGTA
CGCACGAATTTTCTTCCGCAATTCCATATCCACTGGGGAGCACGCACCGA
TCGCTTTGGGGGCCGCGGGAGCTCGGGTCGTGGTGGCGGAGTCGTACGCA
CGAATTTTCTTCCGCAATTCCATATCCACTGGGGAGCTGTACCCGTACGA
GTGTAAACAACGCTTGGTGGACCTCTTCACCACCGGAGACGAGGTCACAG
TGGACCTGACGACGGACACTTTGACCAACAACACCACCGCTGTACCCGTA
CGAGTGTAAACAACGCTTGGTGGACCTCTTCACCACCGGAGACGAGGTCA
CAGTGGACCTGACGACGGACACTTTGACCAACAACACCACCGGAAAGGAG
TACTCGCTCAACCCGCTGGGAGACGCCGGGCCGGTAATCAAAGCCGGGGG
CTTGTTTCCCTACGCAATCAAGACAGGCATGATCAAGAAGGCTGAGGAAT
GAGAAAGGAGTACTCGCTCAACCCGCTGGGAGACGCCGGGCCGGTAATCA
AAGCCGGGGGCTTGTTTCCCTACGCAATCAAGACAGGCATGATCAAGAAG
GCTGAGGAATGA
back to top