mRNA_P-fluviatile_contig13.1774.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1774.1
Unique NamemRNA_P-fluviatile_contig13.1774.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1552358..1552666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.3958266-UTR-P-fluviatile_contig13:1552357..15523631622815537.3958266-UTR-P-fluviatile_contig13:1552357..1552363Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1552358..1552363 +
1693562173.8992226-UTR-P-fluviatile_contig13:1552357..15523631693562173.8992226-UTR-P-fluviatile_contig13:1552357..1552363Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1552358..1552363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.4106085-CDS-P-fluviatile_contig13:1552363..15526661622815537.4106085-CDS-P-fluviatile_contig13:1552363..1552666Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1552364..1552666 +
1693562173.9103703-CDS-P-fluviatile_contig13:1552363..15526661693562173.9103703-CDS-P-fluviatile_contig13:1552363..1552666Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1552364..1552666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1774.1prot_P-fluviatile_contig13.1774.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1552364..1552666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1774.1

>prot_P-fluviatile_contig13.1774.1 ID=prot_P-fluviatile_contig13.1774.1|Name=mRNA_P-fluviatile_contig13.1774.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MRRGGGSVGGLAFELQTSSNTYSPAALAFQWMSSAGTGRRSAAQGSGKPA
SFFHNTIDHSLPDAFVMGVLRRQEKPAHQNIDKKLLTWIFAFFNPFLFRK
R
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mRNA from alignment at P-fluviatile_contig13:1552358..1552666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1774.1 ID=mRNA_P-fluviatile_contig13.1774.1|Name=mRNA_P-fluviatile_contig13.1774.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=309bp|location=Sequence derived from alignment at P-fluviatile_contig13:1552358..1552666+ (Porterinema fluviatile SAG_2381)
TTTCTCATGAGGAGAGGGGGTGGTAGTGTTGGTGGACTGGCGTTCGAACT
GCAAACTTCCAGCAACACGTACTCTCCTGCTGCCTTGGCTTTTCAGTGGA
TGTCGTCCGCTGGTACAGGACGCAGAAGTGCTGCTCAGGGCTCCGGAAAA
CCGGCTTCGTTCTTCCATAACACCATCGACCATTCTCTTCCCGATGCGTT
CGTGATGGGAGTATTGCGGCGCCAGGAGAAACCTGCTCACCAAAACATCG
ACAAAAAGCTGCTGACTTGGATTTTTGCGTTTTTCAATCCCTTTCTCTTT
CGAAAGCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1552358..1552666+

>mRNA_P-fluviatile_contig13.1774.1 ID=mRNA_P-fluviatile_contig13.1774.1|Name=mRNA_P-fluviatile_contig13.1774.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig13:1552358..1552666+ (Porterinema fluviatile SAG_2381)
ATGAGGAGAGGGGGTGGTAGTGTTGGTGGACTGGCGTTCGAACTGCAAAC
TTCCAGCAACACGTACTCTCCTGCTGCCTTGGCTTTTCAGTGGATGTCGT
CCGCTGGTACAGGACGCAGAAGTGCTGCTCAGGGCTCCGGAAAACCGGCT
TCGTTCTTCCATAACACCATCGACCATTCTCTTCCCGATGCGTTCGTGAT
GGGAGTATTGCGGCGCCAGGAGAAACCTGCTCACCAAAACATCGACAAAA
AGCTGCTGACTTGGATTTTTGCGTTTTTCAATCCCTTTCTCTTTCGAAAG
CGCATGAGGAGAGGGGGTGGTAGTGTTGGTGGACTGGCGTTCGAACTGCA
AACTTCCAGCAACACGTACTCTCCTGCTGCCTTGGCTTTTCAGTGGATGT
CGTCCGCTGGTACAGGACGCAGAAGTGCTGCTCAGGGCTCCGGAAAACCG
GCTTCGTTCTTCCATAACACCATCGACCATTCTCTTCCCGATGCGTTCGT
GATGGGAGTATTGCGGCGCCAGGAGAAACCTGCTCACCAAAACATCGACA
AAAAGCTGCTGACTTGGATTTTTGCGTTTTTCAATCCCTTTCTCTTTCGA
AAGCGC
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