mRNA_P-fluviatile_contig13.1756.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1756.1
Unique NamemRNA_P-fluviatile_contig13.1756.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1362888..1363555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size668
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1756.1prot_P-fluviatile_contig13.1756.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1362905..1363306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.343676-UTR-P-fluviatile_contig13:1362887..13629041622815537.343676-UTR-P-fluviatile_contig13:1362887..1362904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1362888..1362904 +
1693562173.8620064-UTR-P-fluviatile_contig13:1362887..13629041693562173.8620064-UTR-P-fluviatile_contig13:1362887..1362904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1362888..1362904 +
1622815537.3653138-UTR-P-fluviatile_contig13:1363306..13635551622815537.3653138-UTR-P-fluviatile_contig13:1363306..1363555Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1363307..1363555 +
1693562173.8814588-UTR-P-fluviatile_contig13:1363306..13635551693562173.8814588-UTR-P-fluviatile_contig13:1363306..1363555Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1363307..1363555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.3545542-CDS-P-fluviatile_contig13:1362904..13633061622815537.3545542-CDS-P-fluviatile_contig13:1362904..1363306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1362905..1363306 +
1693562173.871716-CDS-P-fluviatile_contig13:1362904..13633061693562173.871716-CDS-P-fluviatile_contig13:1362904..1363306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1362905..1363306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1756.1

>prot_P-fluviatile_contig13.1756.1 ID=prot_P-fluviatile_contig13.1756.1|Name=mRNA_P-fluviatile_contig13.1756.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
MEPSYLLASSNGLYTHTHIKQDRAYKLLFRWPAFEVSSIHGPWRIDSWLF
SFEKSCQLGYCLWVFSRWCAGSHVVPTHVGLRSALSIHRVGALVISAPGI
CRGFHFSLQSPCRRHPNSHQKQGGYFHRAVKPM*
back to top

mRNA from alignment at P-fluviatile_contig13:1362888..1363555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1756.1 ID=mRNA_P-fluviatile_contig13.1756.1|Name=mRNA_P-fluviatile_contig13.1756.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=668bp|location=Sequence derived from alignment at P-fluviatile_contig13:1362888..1363555+ (Porterinema fluviatile SAG_2381)
CGAATCAGCAGCCTGAAATGGAACCGTCGTACTTGCTGGCATCGAGCAAC
GGCTTGTACACACACACACATATCAAACAAGACCGGGCCTACAAGCTACT
GTTTCGGTGGCCTGCTTTTGAGGTTTCTTCGATTCACGGCCCTTGGAGAA
TTGATTCGTGGTTGTTTAGCTTCGAAAAATCATGCCAATTAGGATACTGC
CTCTGGGTCTTTTCAAGATGGTGTGCGGGTTCACACGTAGTGCCCACCCA
CGTTGGACTACGGAGTGCGCTTTCCATTCACCGTGTCGGTGCTCTCGTTA
TTTCGGCTCCAGGAATCTGTCGGGGATTTCACTTCAGCCTGCAGAGTCCT
TGCCGCCGCCACCCTAACTCCCACCAGAAACAAGGTGGATATTTTCATCG
GGCAGTTAAGCCCATGTAACGCTGTGCTTCTTTTATATGTGGTGGGATCA
AGAAACCAAATGTTGTTGTCACGTGAGGTGGAAGCTCGATGCCTTTCTTG
TGCCGAATTCATCTCTGATATCTCGCAATAGCTCAGCCGAAACGTAGCTG
AGGTTGGGTTGATGAATCGTACAGGAAGGCTGTCGTTGGATAGCAGAATC
TTCACATCCCCAGTCATCTGTAGAGGTCGGGTCGTGATTTGTATATTCAC
GATGAAAATCACAAGAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:1362888..1363555+

>mRNA_P-fluviatile_contig13.1756.1 ID=mRNA_P-fluviatile_contig13.1756.1|Name=mRNA_P-fluviatile_contig13.1756.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig13:1362888..1363555+ (Porterinema fluviatile SAG_2381)
ATGGAACCGTCGTACTTGCTGGCATCGAGCAACGGCTTGTACACACACAC
ACATATCAAACAAGACCGGGCCTACAAGCTACTGTTTCGGTGGCCTGCTT
TTGAGGTTTCTTCGATTCACGGCCCTTGGAGAATTGATTCGTGGTTGTTT
AGCTTCGAAAAATCATGCCAATTAGGATACTGCCTCTGGGTCTTTTCAAG
ATGGTGTGCGGGTTCACACGTAGTGCCCACCCACGTTGGACTACGGAGTG
CGCTTTCCATTCACCGTGTCGGTGCTCTCGTTATTTCGGCTCCAGGAATC
TGTCGGGGATTTCACTTCAGCCTGCAGAGTCCTTGCCGCCGCCACCCTAA
CTCCCACCAGAAACAAGGTGGATATTTTCATCGGGCAGTTAAGCCCATGT
AAATGGAACCGTCGTACTTGCTGGCATCGAGCAACGGCTTGTACACACAC
ACACATATCAAACAAGACCGGGCCTACAAGCTACTGTTTCGGTGGCCTGC
TTTTGAGGTTTCTTCGATTCACGGCCCTTGGAGAATTGATTCGTGGTTGT
TTAGCTTCGAAAAATCATGCCAATTAGGATACTGCCTCTGGGTCTTTTCA
AGATGGTGTGCGGGTTCACACGTAGTGCCCACCCACGTTGGACTACGGAG
TGCGCTTTCCATTCACCGTGTCGGTGCTCTCGTTATTTCGGCTCCAGGAA
TCTGTCGGGGATTTCACTTCAGCCTGCAGAGTCCTTGCCGCCGCCACCCT
AACTCCCACCAGAAACAAGGTGGATATTTTCATCGGGCAGTTAAGCCCAT
GTAA
back to top