mRNA_P-fluviatile_contig13.1726.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1726.1
Unique NamemRNA_P-fluviatile_contig13.1726.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1726.1 vs. uniprot
Match: D7G2I8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I8_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 6.040e-70
Identity = 130/153 (84.97%), Postives = 137/153 (89.54%), Query Frame = 2 
Query:  410 MEQVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKLAQSALEKSSKQVRGAMRQAPRWQTLSRDYRFWLGLVITLSLVSSVISASGRSQDLVVWHHALGSEELSEAAPFGHAALMAAAATAQSAGDAATQLA 868
            ME VNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAK+AQSA+E  +KQVRGAMR+APRWQTLSRDYRFWLGLV+ LSLVSSVISASGRS DLVVW+  LGSE   EA  F HAAL+AA  TA SAGDAATQLA
Sbjct:    1 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMEDRTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDVLGSEPFGEAL-FAHAALLAAT-TAHSAGDAATQLA 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2I8_ECTSI6.040e-7084.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1062922..1067728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001680.1
Exons3
Model size2824
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1726.1prot_P-fluviatile_contig13.1726.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1064839..1067598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.7898483-UTR-P-fluviatile_contig13:1062921..10648381622815552.7898483-UTR-P-fluviatile_contig13:1062921..1064838Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1062922..1064838 -
1693562227.1894987-UTR-P-fluviatile_contig13:1062921..10648381693562227.1894987-UTR-P-fluviatile_contig13:1062921..1064838Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1062922..1064838 -
1622815552.846955-UTR-P-fluviatile_contig13:1067598..10677281622815552.846955-UTR-P-fluviatile_contig13:1067598..1067728Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1067599..1067728 -
1693562227.2992806-UTR-P-fluviatile_contig13:1067598..10677281693562227.2992806-UTR-P-fluviatile_contig13:1067598..1067728Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1067599..1067728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.807414-CDS-P-fluviatile_contig13:1064838..10651321622815552.807414-CDS-P-fluviatile_contig13:1064838..1065132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1064839..1065132 -
1693562227.272288-CDS-P-fluviatile_contig13:1064838..10651321693562227.272288-CDS-P-fluviatile_contig13:1064838..1065132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1064839..1065132 -
1622815552.8207023-CDS-P-fluviatile_contig13:1065724..10658891622815552.8207023-CDS-P-fluviatile_contig13:1065724..1065889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1065725..1065889 -
1693562227.2814841-CDS-P-fluviatile_contig13:1065724..10658891693562227.2814841-CDS-P-fluviatile_contig13:1065724..1065889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1065725..1065889 -
1622815552.8328888-CDS-P-fluviatile_contig13:1067280..10675981622815552.8328888-CDS-P-fluviatile_contig13:1067280..1067598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1067281..1067598 -
1693562227.2903125-CDS-P-fluviatile_contig13:1067280..10675981693562227.2903125-CDS-P-fluviatile_contig13:1067280..1067598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1067281..1067598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1726.1

>prot_P-fluviatile_contig13.1726.1 ID=prot_P-fluviatile_contig13.1726.1|Name=mRNA_P-fluviatile_contig13.1726.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=259bp
MCACSRRRSHSVQYGGVPDVESNLVSSSLRTPRLTKIHLTQEECYSTTAV
VEIVSPHPRCCCCCCGCCCCCCCRCCFSPRTGHPSLGQRRSLSMEQVNPR
EDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKL
AQSALEKSSKQVRGAMRQAPRWQTLSRDYRFWLGLVITLSLVSSVISASG
RSQDLVVWHHALGSEELSEAAPFGHAALMAAAATAQSAGDAATQLAETAS
AGAALVFA*
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mRNA from alignment at P-fluviatile_contig13:1062922..1067728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1726.1 ID=mRNA_P-fluviatile_contig13.1726.1|Name=mRNA_P-fluviatile_contig13.1726.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4807bp|location=Sequence derived from alignment at P-fluviatile_contig13:1062922..1067728- (Porterinema fluviatile SAG_2381)
TTGGTGTGCTCCAAAGCAGAGGAGTGATCGTTTCGTCTCGGGCAAGCTTC
TCTCCTTCTCGATTTGTCGCCCCCAAGGGTGAGTGTGCACGTCTTGGGAG
AGACTCTCACGGTAAATATCATCAGCTTGCATGTGCGCTTGCTCACGGCG
CCGCTCGCACAGTGTACAGTATGGCGGTGTTCCCGACGTTGAGTCTAATT
TGGTGTCTTCCTCTCTGCGCACGCCACGTCTGACAAAAATACATCTGACC
CAGGAAGAGTGTTATAGCACAACCGCAGTTGTCGAGATCGTCTCCCCGCA
CCCGCGTTGTTGCTGTTGTTGTTGTGGCTGCTGCTGCTGCTGCTGCTGCC
GTTGTTGTTTTTCTCCGCGAACAGGTCATCCATCGCTCGGACAGCGCCGC
TCACTTTCGATGGAGCAAGTCAACCCGCGCGAGGATGCAGATTTCGAGGT
TTGTCGCGTGTGGGTGCGGGTTGTATTTATTTGTTTTTTTAAAAGAAAAA
CTGCGTTTCTACCGAAACAGCGAGATGACACCCCGAAGCTGCCGAAGTTT
GGAGCCGCGCCTGGGGCCCGGGTAACATACCACTTGCTCAATCGTATGCC
AGTGTTTATTTGGTATGTTGGCGGGCCTTGGATCCATTTCATCCCTGTTT
TTCCCAGCAGCCGCGCTCGGTCCACTCTTCTCTAGCAGTTCAAGTTGGTC
TTCCGAGGGCAGGATGGTAAAATTTTCGCCGCTTCTCTCCTCGAACACAC
CGCCAGAAAAATAAGCTCACGCCAGGTGTGACACACGTACCCGTATCCGC
AGCAGCACGCACATGTGCCGTGCCTGCTGCCCTCCCTCGCGCGAATCGGC
GGCATCATGAGTTAGAAAATGTATCTTGAGCCCGAAGGCACCTCCCGCGC
ACACATGCTCGTAAACGTGTAGGAAGTTGGCGTACCACTCCGGAGTGTGC
GGGTCTCCACATCAGACATGTTGTCGCGCCGAACTTCGTTCCCTCCGCGC
CACAACCCGCCTGAAACGCATGCGAAGTGATTGCTGGTGAGCGCGTGTGT
GTCACCCGCCACCGGCGGTTGCCGTGCTGTGTCGTCGGAGGACGTCGGGG
CTGGCGCGTATGGTCATCGACCCCTACCCTGAAGGACGCACGAGACGGAA
AGAGGTCGCACCCGGGTGTGTGCTTTTCACGAAATACTGGCGGCAATATC
TTGCGCACCACCTCTAATCAGCAGTATCCTGCAAGCCGGGAGTGCGGCTG
GCCAACCTCTTCATCTCTTGATCCCAGTCGGGTTCTCACTCGTCCAGGTT
GTGGTTTTAGAAAGCCGAGCAAATTCCGATCGCGATGAAGCAGGCAAAGC
GACGCACGTCAAGATGCTTCCAATGCCGAAGTGATGTGGTTGGCACACGC
ATCGCCGACAACCTTGGCGGCACCCTCCCCGAACGGCCCCCTCTGCGAGC
ATCTTGACCCCACCGCCCGAACTAAGATGTTGAGCATATTTCGCATGTGC
CGACGACCCTCTGCATAAGCCAAGGTGAAAAACATGCCACGAGCACACTT
CCCCTGCCCCCCCCTTCCCGGTCCGGCCTGCCTCAGCCGCTTTTTGTTGA
TCTCATCTCCCCGCTGTCGTGTATTGCGCACTGTTTGGAAGACGAGAGAG
TGAAGGTACCCCCATGATCAGCTTGCTTCTCTGCCCTGACCAAATTCCGC
TACACAGGGGTGGCAGGCCCTCTAGATCCCCGGCGTACGTTTTTTTCCCC
TTGAGGCTGCCTCTCTCTCTCCTGGCAACGACGCTCTCCCAACGACTCTC
CCCGGCCGATATTCTGCTGGGTTTGCTTCCACGGACCAGATGACGGTGGA
CTGGGACGAGGAGCTGCGCAAGCTGAACGCGAGCCAGTACGGCAAGCGGC
AGGAGCGTGACTTGACGAAGGACATGAACGACCCCGAGGCCGTAAAATGG
GCGAGGAAGAACGCGAAACTCGCCCAGTCGGCGCTGGAGAAGAGCTCGAA
GCAGGTGACTACTTGCACACGCACATGAGAGTGTGGGAGAGGAGGTGTGA
GCGTAGGCCCTTCAATGCGACAGGTCTCAAGCGGGTGCGTGAAGCGGGCA
TCGACGATGGTGTTCCGTGCGTCAGCGTTAGATTAAAAGTTTGCATTCTG
GGAGGTGGTATGGTGGCTTTCACCGTGGAGTACGCGATCGATCTGTGTCG
CTTCGCCTTCTACCCTTGTTCTCCACGGGATGCCGCAAACACCGGTTCAT
GATGGCGTTGAAAATTCCCGCCGTCAAGGTTTCTTTCGGAGCCCAGCATG
GGTTGACTCAAGCGACTCCTTTTCTGCCATGAAGAAACTAAAAACTTGGC
TCCGACGCCCGTAATTTCTCAACGGAACCGCCGTCGGTACCACCGCCGTG
ACTCTTCAACAGCCCTTTGCCTTCTCTCGGGTCTGTCGTCTACCGTGTAC
CGTTTTCACATCGTCGAAGTGATGCACGCAGGCCATCCCTCCAGCTGTAA
AGCTTTGTTGGGAGTTGACTTTTCATGCACACGAAGTCCCAAAACCCCAC
CCCTCAACCTCCCCCCCCATCCCCAACTCCCACTTTTATGATACAGGTCC
GAGGTGCGATGCGCCAGGCCCCCCGCTGGCAGACCCTGTCCCGCGACTAC
CGGTTCTGGCTCGGGCTCGTGATCACCCTGAGCTTGGTGTCGTCAGTCAT
CAGCGCCTCCGGCCGGTCCCAAGACCTTGTGGTCTGGCACCACGCCCTCG
GCAGCGAGGAGCTCAGCGAGGCGGCACCGTTCGGGCACGCCGCCCTGATG
GCCGCAGCGGCGACCGCCCAGTCCGCCGGCGACGCAGCGACCCAGCTGGC
GGAGACTGCCTCCGCCGGGGCCGCCCTCGTGTTCGCGTGAGTCGCTTCAG
CACAAACGCAAGGAGCGTGAGCGAGATGCGCTGGCGAAACGCGCGCGAGT
TGCAACCAGTGATGCGCAAAGCGTAACTCGAAGAGGGGAGAGAAAGTGGA
GCTCGGAGATTGAGGTAGTTCGGCTAGGAGAGGCGCAGCGCACCCGGTCA
GGCGGCCAGCTCCGTCTTGTTTGTTCTACTGCCCTCGGTTGCCGTTGGTG
GTCGCGGTCGCTGACAGGGCCTTGGCCGAGTACTGCTGCGACGCTGGCTC
CAGACCGGATCCCGCGGGAGGATGGGTTGCCCGGGTGTGTGGAAAGGGTG
AGAGGTCCAGACGTCTGCGTTCTTGTCCAGTTATTGGGGGGAGGTGGGGG
ATGGCGGGTCCAGCCGCCGCTGTCCACTTTGTTTTCCGAAGCGCGTGGTG
GGTTGGCGTCTGATTCCGGACGAGCAGTAAAAGGATGAAAAATCAGTTCG
AGGCGTGCCGTCTCGAAATACGTGGGTGCAGAAGAAAGCGTGTCAATCGG
CCACTCGGCGGTGGGCTACCTAAGGGTCCAGAACGACGGGCCGATGTTCT
GATCGACCTAAAAATGTAAGTAGGGGAGTGCACGACTGTACGGAGGGAGG
GGGGGACGTTGGGTATGAGTGGTACACAAAATGTATTTGACCGATCGATC
GATTGATCGAGCCAAAGCGCGACCGAGAATGTCTTCATCAGCGGCGGTAG
GCATGCCTCAGCGGCTCCGCTCGGTGGTGAAGGGGTGGGTGTGTTTTTGT
GTGTTTGGGGACCATCTTGTCGACATTCGCGACTCGTATTTGTGCGTCCA
CGGCCGAGAAGCGTTCAAGAAGAGGTTGGGGACGAGGGAGAGGCTTGCTT
TTCTGTGGGGCCGCGGTCTGAGATCCAGCGACGCGATTGGTGAGCGCTTT
GAGGACCTGAAAGGTCGTAGTCGTGCCTTCCACGCTGCGAAAAGCAGGCG
AAGTGGCGCTCTCGCTTAGTGGAAATGAAGTCGTGTAACTTAAGTGTGTC
ATCGAAGCCCCACTTGCCAGATGGGGCACCTTTCCCCTGCTTCGTGCAGT
CGGTTTCAGCCAACAGGCTGCAGAAACCGCGGGTGTTGGTCGGCGATCTG
GTCTGTCGACGGTGGTCCATGCTTCGAAGGAGCGGTGCAGGCGGCGGGAG
AGTGTACATGCAACAGGATGGTCATCCTCTTTCGCTACGGGGCACTGCTA
TTGTCGAGCGCGGAAGGTCAGGGGGTGGGGTGGTTTTCTATCATCAGGTG
GATATTGGGTGCTGGGGTGGCGAAGGAGGGTTGGTGGCAGCGAGTGAATC
GTCGCTAGTGCAAGACAGGGTTGAGAGGCGTACACAGCTGTATGATATCG
TCTGTTTACCTTGTAGTTTTGACGTTCTACTCATGGTCATTTCGATGAAT
TTGTGCAACCGGTTGAGTTGAAACGAGAAGGTTTGGCCGCGCACGGGTGT
TTTTTGGAACTCCCTCGCAATTGGGAAGTTGTCGACATGAACTCCGCGGT
GGTTTTGACACATGGTCACGCCTGTATTCACCTTGTGAGGACCCTCGCCG
ATTCCGCTGCGTTCGCATGCCCGCGTCTATGAAGGCAGGAGAGTAGGTTG
CCTTGGGTACGAGCGAGTGAAAGGACGGACTAAAACGTGAACCTTGAAAT
GGCTGGGATCGAGATCAAGCCTCACAGGCCTGCTTGCATGTTTCGGTCTC
TAGCTTGCTGTGTAAATTGGTTGTTGGGGCTCTCTTTTCCACGCGAGTGG
CGGAGAGCACGTGCAAAGCACAAGTGGGTGCCGACAGCCGCCTCGATGGG
CGTGTGTAGCAAAGACGACGATGTGTCGGGCCTTCCGATTTTGTCAAGTA
GGATTAATTCGGTATTTGTCACCAGGGCTCCTGTTTTCTTCCGCACGTGC
AGCGTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1062922..1067728-

>mRNA_P-fluviatile_contig13.1726.1 ID=mRNA_P-fluviatile_contig13.1726.1|Name=mRNA_P-fluviatile_contig13.1726.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1554bp|location=Sequence derived from alignment at P-fluviatile_contig13:1062922..1067728- (Porterinema fluviatile SAG_2381)
ATGTGCGCTTGCTCACGGCGCCGCTCGCACAGTGTACAGTATGGCGGTGT
TCCCGACGTTGAGTCTAATTTGGTGTCTTCCTCTCTGCGCACGCCACGTC
TGACAAAAATACATCTGACCCAGGAAGAGTGTTATAGCACAACCGCAGTT
GTCGAGATCGTCTCCCCGCACCCGCGTTGTTGCTGTTGTTGTTGTGGCTG
CTGCTGCTGCTGCTGCTGCCGTTGTTGTTTTTCTCCGCGAACAGGTCATC
CATCGCTCGGACAGCGCCGCTCACTTTCGATGGAGCAAGTCAACCCGCGC
GAGGATGCAGATTTCGAGATGTGCGCTTGCTCACGGCGCCGCTCGCACAG
TGTACAGTATGGCGGTGTTCCCGACGTTGAGTCTAATTTGGTGTCTTCCT
CTCTGCGCACGCCACGTCTGACAAAAATACATCTGACCCAGGAAGAGTGT
TATAGCACAACCGCAGTTGTCGAGATCGTCTCCCCGCACCCGCGTTGTTG
CTGTTGTTGTTGTGGCTGCTGCTGCTGCTGCTGCTGCCGTTGTTGTTTTT
CTCCGCGAACAGGTCATCCATCGCTCGGACAGCGCCGCTCACTTTCGATG
GAGCAAGTCAACCCGCGCGAGGATGCAGATTTCGAGATGACGGTGGACTG
GGACGAGGAGCTGCGCAAGCTGAACGCGAGCCAGTACGGCAAGCGGCAGG
AGCGTGACTTGACGAAGGACATGAACGACCCCGAGGCCGTAAAATGGGCG
AGGAAGAACGCGAAACTCGCCCAGTCGGCGCTGGAGAAGAGCTCGAAGCA
GATGACGGTGGACTGGGACGAGGAGCTGCGCAAGCTGAACGCGAGCCAGT
ACGGCAAGCGGCAGGAGCGTGACTTGACGAAGGACATGAACGACCCCGAG
GCCGTAAAATGGGCGAGGAAGAACGCGAAACTCGCCCAGTCGGCGCTGGA
GAAGAGCTCGAAGCAGGTCCGAGGTGCGATGCGCCAGGCCCCCCGCTGGC
AGACCCTGTCCCGCGACTACCGGTTCTGGCTCGGGCTCGTGATCACCCTG
AGCTTGGTGTCGTCAGTCATCAGCGCCTCCGGCCGGTCCCAAGACCTTGT
GGTCTGGCACCACGCCCTCGGCAGCGAGGAGCTCAGCGAGGCGGCACCGT
TCGGGCACGCCGCCCTGATGGCCGCAGCGGCGACCGCCCAGTCCGCCGGC
GACGCAGCGACCCAGCTGGCGGAGACTGCCTCCGCCGGGGCCGCCCTCGT
GTTCGCGTGAGTCCGAGGTGCGATGCGCCAGGCCCCCCGCTGGCAGACCC
TGTCCCGCGACTACCGGTTCTGGCTCGGGCTCGTGATCACCCTGAGCTTG
GTGTCGTCAGTCATCAGCGCCTCCGGCCGGTCCCAAGACCTTGTGGTCTG
GCACCACGCCCTCGGCAGCGAGGAGCTCAGCGAGGCGGCACCGTTCGGGC
ACGCCGCCCTGATGGCCGCAGCGGCGACCGCCCAGTCCGCCGGCGACGCA
GCGACCCAGCTGGCGGAGACTGCCTCCGCCGGGGCCGCCCTCGTGTTCGC
GTGA
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