mRNA_P-fluviatile_contig13.1722.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1722.1
Unique NamemRNA_P-fluviatile_contig13.1722.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1020297..1021010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1722.1prot_P-fluviatile_contig13.1722.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1020540..1020953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2800584-UTR-P-fluviatile_contig13:1020296..10205391622815537.2800584-UTR-P-fluviatile_contig13:1020296..1020539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1020297..1020539 +
1693562173.8244588-UTR-P-fluviatile_contig13:1020296..10205391693562173.8244588-UTR-P-fluviatile_contig13:1020296..1020539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1020297..1020539 +
1622815537.3086717-UTR-P-fluviatile_contig13:1020953..10210101622815537.3086717-UTR-P-fluviatile_contig13:1020953..1021010Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1020954..1021010 +
1693562173.8499823-UTR-P-fluviatile_contig13:1020953..10210101693562173.8499823-UTR-P-fluviatile_contig13:1020953..1021010Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1020954..1021010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2959208-CDS-P-fluviatile_contig13:1020539..10209531622815537.2959208-CDS-P-fluviatile_contig13:1020539..1020953Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1020540..1020953 +
1693562173.8335395-CDS-P-fluviatile_contig13:1020539..10209531693562173.8335395-CDS-P-fluviatile_contig13:1020539..1020953Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1020540..1020953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1722.1

>prot_P-fluviatile_contig13.1722.1 ID=prot_P-fluviatile_contig13.1722.1|Name=mRNA_P-fluviatile_contig13.1722.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=138bp
MHVYLYSSDMGGYGIFFSGLFEEIVERLCGLPTCGVPAGCTTTTHLRESL
RAGRSTYMCCTSSNNTGLWLPLQHSVVVGGRFPASYGEAPRLLVLLATAA
ACPFGHRRCLSFWPPLLLRESTSCMPRHNLVCVRHCS*
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mRNA from alignment at P-fluviatile_contig13:1020297..1021010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1722.1 ID=mRNA_P-fluviatile_contig13.1722.1|Name=mRNA_P-fluviatile_contig13.1722.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig13:1020297..1021010+ (Porterinema fluviatile SAG_2381)
TGTCTTTGTGATGGGGAGTCCAGTGTATCCAAGTTTGACAGGAGCCAACG
ACAGGCGATGCGCCTTCGCCATAAGCGCACCTGTTAACTTTTGTCTTGAG
AACATTCGCTCACAACTTTTGAACAAGCTTTAATCTGTGCAAGCCATGCA
ATTGCGTAGACCCATGCGCCCGACCAAAGAATAATCGAACATCTTTTGCT
TCGTAACAGTGGGGTTTGCGCTTTCGCTCTCGCTGCGAGGGGAATGCACG
TGTACTTGTACAGTTCGGACATGGGTGGGTACGGTATTTTTTTCTCAGGG
CTGTTCGAAGAGATCGTCGAGAGGTTGTGTGGGTTGCCCACCTGTGGTGT
GCCTGCTGGCTGTACAACAACAACACACCTTCGTGAGAGCTTGCGTGCCG
GGCGTTCAACGTATATGTGTTGCACGTCTTCGAACAATACAGGATTATGG
CTACCATTGCAGCATTCGGTTGTTGTCGGGGGTCGTTTCCCAGCCTCCTA
TGGTGAAGCTCCACGGTTGCTTGTCCTTTTGGCCACCGCTGCTGCTTGTC
CTTTTGGCCACCGCCGCTGCTTGTCCTTTTGGCCACCGCTGTTGTTGCGG
GAAAGCACGAGTTGCATGCCACGACATAATCTGGTCTGCGTACGGCACTG
CTCATAATTACTGCCCTGGTTTGGAGATATGTTTGCAGCACCGAAGAAAG
CACTTTCACGTCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1020297..1021010+

>mRNA_P-fluviatile_contig13.1722.1 ID=mRNA_P-fluviatile_contig13.1722.1|Name=mRNA_P-fluviatile_contig13.1722.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig13:1020297..1021010+ (Porterinema fluviatile SAG_2381)
ATGCACGTGTACTTGTACAGTTCGGACATGGGTGGGTACGGTATTTTTTT
CTCAGGGCTGTTCGAAGAGATCGTCGAGAGGTTGTGTGGGTTGCCCACCT
GTGGTGTGCCTGCTGGCTGTACAACAACAACACACCTTCGTGAGAGCTTG
CGTGCCGGGCGTTCAACGTATATGTGTTGCACGTCTTCGAACAATACAGG
ATTATGGCTACCATTGCAGCATTCGGTTGTTGTCGGGGGTCGTTTCCCAG
CCTCCTATGGTGAAGCTCCACGGTTGCTTGTCCTTTTGGCCACCGCTGCT
GCTTGTCCTTTTGGCCACCGCCGCTGCTTGTCCTTTTGGCCACCGCTGTT
GTTGCGGGAAAGCACGAGTTGCATGCCACGACATAATCTGGTCTGCGTAC
GGCACTGCTCATAAATGCACGTGTACTTGTACAGTTCGGACATGGGTGGG
TACGGTATTTTTTTCTCAGGGCTGTTCGAAGAGATCGTCGAGAGGTTGTG
TGGGTTGCCCACCTGTGGTGTGCCTGCTGGCTGTACAACAACAACACACC
TTCGTGAGAGCTTGCGTGCCGGGCGTTCAACGTATATGTGTTGCACGTCT
TCGAACAATACAGGATTATGGCTACCATTGCAGCATTCGGTTGTTGTCGG
GGGTCGTTTCCCAGCCTCCTATGGTGAAGCTCCACGGTTGCTTGTCCTTT
TGGCCACCGCTGCTGCTTGTCCTTTTGGCCACCGCCGCTGCTTGTCCTTT
TGGCCACCGCTGTTGTTGCGGGAAAGCACGAGTTGCATGCCACGACATAA
TCTGGTCTGCGTACGGCACTGCTCATAA
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