mRNA_P-fluviatile_contig13.1721.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1721.1
Unique NamemRNA_P-fluviatile_contig13.1721.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1721.1 vs. uniprot
Match: A0A6H5L0A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.380e-32
Identity = 91/241 (37.76%), Postives = 107/241 (44.40%), Query Frame = 3 
Query:  339 MGIASSRSPAMAYKDGSIWCSAFDDAGNRCWVNSQTGEKTYHLVGGRAVRRPSNTSXXXXXXXXXASPYAMQSPSR---------------------PWAGTTTPVPHSPGG----PVMHSPGPA---MHSPHHNNGATWVHPNSPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYGTPMVAYQSPQPAXXXXPAADAGPVPTREGEAVGYRSSKYYVRPRSKMSWMWTE 977
            MG  SSRSPAM YKDG+IW S FD+AGN CWVNS TGE+ YH +GG+AVR PS+ +         +SP+ MQSP R                     PW     P  HSPGG    P+ HSP PA    H+ H +  A    P + H                                           MV Y            A   P PT  GEA+GY SSK+YVRPRSK SWMWT+
Sbjct:    1 MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCWVNSATGERAYHFIGGKAVRGPSSAA---------SSPHTMQSPGRVSRRPSDTTXXXXXXXXGHAAPWT-AGVPAMHSPGGYVAPPMHHSPSPAGFAAHAMHSSAPADLACPTTNHPVPGQA----------------------------------AATMVPYSYYHQPGYGGVVAAGDPTPTAAGEAIGYPSSKHYVRPRSKASWMWTQ 197
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BLAST of mRNA_P-fluviatile_contig13.1721.1 vs. uniprot
Match: D7G838_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G838_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.430e-12
Identity = 46/102 (45.10%), Postives = 56/102 (54.90%), Query Frame = 3 
Query:  339 MGIA-SSRSPAMAYKDGSIWCSAFDDAGNRCWVNSQTGEKTYHLVGGRAVRRPSNTSXXXXXXXXXASPYAMQSPSRPWAGTTTPVPHSPGGPVMHSPGPAM 641
            MG+  SSRSPAMAY +G IWCS FD+ G RCWVN+ TG++TY  + GR V  P+  +         ASPY +Q    P   T      SPG P    P  AM
Sbjct:    1 MGLTISSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPVT-PTQPAV--------ASPYVVQQSPMPGPHTAPWGLPSPGYPAPPPPAVAM 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A0_9PHAE7.380e-3237.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G838_ECTSI2.430e-1245.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1011613..1015738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_001620.1
Exons3
Model size2126
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1721.1prot_P-fluviatile_contig13.1721.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1011951..1014598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.186076-UTR-P-fluviatile_contig13:1011612..10119501622815552.186076-UTR-P-fluviatile_contig13:1011612..1011950Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1011613..1011950 +
1693562225.7802794-UTR-P-fluviatile_contig13:1011612..10119501693562225.7802794-UTR-P-fluviatile_contig13:1011612..1011950Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1011613..1011950 +
1622815552.2285256-UTR-P-fluviatile_contig13:1014598..10157381622815552.2285256-UTR-P-fluviatile_contig13:1014598..1015738Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1014599..1015738 +
1693562225.8225725-UTR-P-fluviatile_contig13:1014598..10157381693562225.8225725-UTR-P-fluviatile_contig13:1014598..1015738Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1014599..1015738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.1963606-CDS-P-fluviatile_contig13:1011950..10119701622815552.1963606-CDS-P-fluviatile_contig13:1011950..1011970Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1011951..1011970 +
1693562225.789536-CDS-P-fluviatile_contig13:1011950..10119701693562225.789536-CDS-P-fluviatile_contig13:1011950..1011970Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1011951..1011970 +
1622815552.2092397-CDS-P-fluviatile_contig13:1013277..10133491622815552.2092397-CDS-P-fluviatile_contig13:1013277..1013349Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1013278..1013349 +
1693562225.8020098-CDS-P-fluviatile_contig13:1013277..10133491693562225.8020098-CDS-P-fluviatile_contig13:1013277..1013349Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1013278..1013349 +
1622815552.2189612-CDS-P-fluviatile_contig13:1014042..10145981622815552.2189612-CDS-P-fluviatile_contig13:1014042..1014598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1014043..1014598 +
1693562225.8105724-CDS-P-fluviatile_contig13:1014042..10145981693562225.8105724-CDS-P-fluviatile_contig13:1014042..1014598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1014043..1014598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1721.1

>prot_P-fluviatile_contig13.1721.1 ID=prot_P-fluviatile_contig13.1721.1|Name=mRNA_P-fluviatile_contig13.1721.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=216bp
MGIASSRSPAMAYKDGSIWCSAFDDAGNRCWVNSQTGEKTYHLVGGRAVR
RPSNTSVRRPSNTSMASPYAMQSPSRPWAGTTTPVPHSPGGPVMHSPGPA
MHSPHHNNGATWVHPNSPHHGAVTMAHPHSPHHPGMAMSHPHSPGPAALA
TGYGGAPGYGTPMVAYQSPQPAYGAPPAADAGPVPTREGEAVGYRSSKYY
VRPRSKMSWMWTEQR*
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mRNA from alignment at P-fluviatile_contig13:1011613..1015738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1721.1 ID=mRNA_P-fluviatile_contig13.1721.1|Name=mRNA_P-fluviatile_contig13.1721.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4126bp|location=Sequence derived from alignment at P-fluviatile_contig13:1011613..1015738+ (Porterinema fluviatile SAG_2381)
CTCTCTCAAATCTATATTCAGACGTTGATTTGCTTACCGCTGGTCCAGGA
GAGACTGTCTCGTCCACGGGACTGTCAACTCCTTTTTCATGACATGTTCA
ACGGTGTGTGTTCGTCCCACGCGCATTGTCCGCGGCCCACCAGCTCGCCC
ACCTGCTCCACTGCTGTCTTGCACCCCGCTGTTCCCCATCCATTGTCGCG
CACACACTTGGTCTTCCTTTGGCTTTTTTTAACGCTGACTCTTCCACCTC
GAACGTTCACCCGCGATCTGGTACCACACCACCGTGTCCCCACCGCCGCT
ACCGCCACCGCCGCAGCAGTACAGGTCCACGAGCAAAGATGGGCATTGCT
TCTTCGAGGTGGGTACCTTTAGGTCGTGAGGCTTGACACAGAGATTTGAA
TTCCTGTAGGTTTCTTCCGCCCGTCGTCTCGACTTGAACTTGTGCCTTGA
TGCGAATCGAGCAGATCAGCCATGAGCAGTATAGCGATAGTTCGAGGCAG
GTTTCCAACTCTGCTGCATCTCGCGTCGTATTTTGCTTTTTTTCGACGGA
ACATAGTAAACGTTCATCACGGTGTCTTGCAAACTCCAGCGCTGCTGCAG
CTGCTGTGTCAGCTCGACGAGACACGAGACGCTTGACCACAGTGCCGGCC
CGCTCACAAGAAACATCTTCGTAAGAAACCGAGCCTCAGATTTTTAGCTT
ACCTAAGAAATACCATGGTATGCCGTAAGAAATTGCGTTTACCGGCCGAA
GCTACACTAAACCCTGCAAAGAAGCCTGCGTTCAGTGGCGGGGGACATAA
GAAGAAATGAGCCTCGCTCGAATTAAGTGTTTCTTACGAGCGGGCCGGCA
CTGTATGAAGCAACCCCCCTCGGCCGGAAGCCCCTTCCCGCTTCCGTGTC
GACCCAACCCCCTCTCGAGTACTCGATCGCCTTCCGCTTTCCCCTTCGCC
CGCAGTCTTTGACTTGCGGCAGCCTGCAGTCTGTTGTGTTCGTTGGTGCG
ATGCGCCGTCGAATTTGGCTCGGGTATTTGGCCTTCCTTTCCGCTTCTCA
GCGGCAATTTTGACCGATACGCACGATGCGCCGTTCTCAGGAGTAAGAGA
ATGCGGAGAAGAGACATCAGACAGGAGACCGCCCTGCCTCATTGACACCG
CAGCGGTACTGCTGCCGAGCGATTGAGTATACATACACATCGTGCTCCAT
GTCTGCCAGGGTGCATAACCGAAGAGTACTTCAACATGACGCCGGATCTT
CCCAACAGACGCGTCACGTTCCCGTGTCTACGGGCGACGATGATTCAGCA
CCCTATCAGACCCACTCGGGCTTCCAGACGCGTCACATCTCTGTTTCAAC
GCGAGGCAAACTAATTATCAGCACCAATTTCAGATCCGCTTGTGATTCCC
TTGACCTCACCCACACGCCGCCCCACAGTCGAACTCGTGAATCGGTCTCC
CGATTTTCGGCATCGACGCCGTGTGGGTGACATTCCTGCAGGGGAGAGTT
CTTGCCCCTGTTGAGTACCCTGTGGTTTGTCGCTTGCACGCACCAAAGGA
AGGGCGTAAGCAGGCCCACAATCGGTCGTGAAGCTCCGCCCGTTTCAGAG
AAAAAAGATGTGTCCGCACGCTCCCTTGCCCCAATCTCATTCCGATGCCC
CCGTTCCATCCTCAGATCCCCAGCAATGGCGTACAAGGACGGAAGTATTT
GGTGCTCCGCGTTCGATGATGCAGGCAACAGGTGCTGGTAAGTTTCACCG
TGGCATCCTGCATTTTCTCGAAGCGTTTCCTCCGAGAGTCGCTCAGCGCC
TCCGGCACCGATGACGTCAGACTAGGTACTTGAGCGCATCGTCGGTACCT
TGCCCCCTACACGCCACAGATTGGACTAAATCTAACGCTTCGTCTTCGAG
GGCCGCAGTTCACATGCTGAATACGAGCGGCCGCTTCCCTTGTAACTTAG
GGACGGGTTTCTGGCTTGGTTGGTCCCCAACTTGAAAAGATTGATCGCGC
CCCTGCCGGAGTCATCTCCCCCTCTCGGGCTCGTGAACGCTTGCACATTT
GATCGGACGTGCGCAAGTTTAGCGCTAATTCTAACGCCTGGACTTTGATT
TCACGCAGACGAACAAGGTGCCCTCTCCCGTCTGCCCTCTGCGCGTTGCT
TTTCTTATCGATTTGGCAGCAGCTTGGCGTCTGTGTGATGTGAATGCACC
CAACCGTTTTAATTTCAATACATCGAGGAAAATCACACGTGCCGAATGCA
TACACAGCCCCGGAATTTCGAGCTATGCGCCAAAGAACGATACAGCTGCG
GACGGCTTGAAAGTTCAGCGCTCAATCCATGCTCAACCGTAGGCGCATTG
CAAACAATCGCCCGCACTCTTTCCCCTTTTTTGTTTTTCATTTTTTTATT
TTCATTTTTTTTTCATTTTTTGTTAAAAAGGGTAAACAGCCAGACGGGAG
AGAAAACGTACCACCTCGTGGGCGGCCGGGCCGTCAGGCGTCCGTCCAAC
ACCTCCGTTAGGCGCCCGTCCAACACCTCCATGGCGTCTCCCTACGCCAT
GCAAAGCCCGAGCCGACCCTGGGCCGGCACGACAACCCCCGTGCCCCACT
CTCCCGGGGGTCCCGTCATGCACAGCCCCGGCCCCGCCATGCACAGCCCA
CACCACAACAACGGCGCGACCTGGGTCCACCCCAACAGCCCGCATCATGG
CGCGGTGACCATGGCTCACCCTCACAGCCCCCACCACCCCGGGATGGCGA
TGTCCCACCCTCACAGCCCGGGCCCCGCGGCGCTCGCTACGGGCTACGGC
GGTGCCCCGGGATACGGAACGCCAATGGTCGCCTACCAGTCGCCGCAGCC
TGCGTACGGCGCCCCCCCCGCCGCCGACGCCGGCCCGGTCCCCACTCGCG
AGGGCGAGGCCGTGGGCTACCGCTCGAGCAAGTATTACGTCAGGCCTCGG
TCGAAGATGTCGTGGATGTGGACCGAGCAGCGATGAGCTACGTTACTCGC
GTTGACATTGGTTGAGGGGGGGGTGCTTTGTGGGCGGTGAAAAATGCGTT
CGAAGATGTTGTGAGTCATCACTGCTGTAAAGAGGCGCGCGCGAGAGCAC
ACATTCAAATGCTGGATACAGTGCGCAAAGACAGTTTTCTGCTTCTGCAT
GAGTGCGCAAATCGGCGCGCGTGCGGTCGGTCACGCGAGCGGGGGGGCGT
TTCGAACGCATCTAACGGCTTGCAGCTTTGTCGCCTATAAATGTGCCTAA
CCAGTGAAGTTTGTAGCGAAGTTGCTGATCGTTGTCACGCGTTGTTAAAA
ACTCGGTTTCGAAGCATACTGAACGGGGTTCGTGAGTTGGAGGGGGGCGA
AGAATGTCGAGCGGTGTATTCAAATCCACACTCACGGTTCAGGCAAAAGG
GGTGCAAATTGAATTCCGTCCGCGACGCTATAAGCAGCAGCAACGGCGAT
TAGTTTACATCTGTTTGGTTTGAAGTTCTTTTATTTACGAAAAGGATTTC
CTACGGTTTCTGTTATGTGGTCGTGTCCCTAGCGGACAGGCACGGGATGG
GCACTTTTTTATTATTCGGATTTGTCTTGGACGCGAGATGTTTTTCGGTT
ACGGCGTATGGCGTTTGACATATTGCTTGGAGTAGTGATAGGCAGGGCTT
CTGCGAAGGGCTGTTTCGGATAATACCGGATTGCCGCGTCGTGGTCGGGG
ACGACGAAAGCTCAATGCGAGACCTCTTCATTCCTGTGACTTGTTGAACA
AGTGCTTTGGGAACGCTTGCAGGAAGCTCGGCTTGTTTGGCCTTGTATGA
TGTACGATGGGTTCTGAAGAATTTTTTCGCCGTTGAGTCGGGTTGTCACC
TTGCTTGAGTGTCGTTGCGCAATCTGAACGCAACGCAGCCCTGTTGCAGA
AGGTAGAATCGATAAACATTCGGAGCCGTATTATTCAGCTTCCGTTTTGA
TATGGGCACGGACCAGCAAGGGTCCAGGGTTCTTGTAAATATGCGCTCGT
GGAGTGAGCAGTGTTCTGCTTTGACGTGAAGCCGCCTTGAGAGTTTTTGG
GATACGAAATGATTTGGAACTTGGGATACCTTGTCGAAAGGGTTCTGAAG
TGGTGTTGTGTTGTATCTCGTGTACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1011613..1015738+

>mRNA_P-fluviatile_contig13.1721.1 ID=mRNA_P-fluviatile_contig13.1721.1|Name=mRNA_P-fluviatile_contig13.1721.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1296bp|location=Sequence derived from alignment at P-fluviatile_contig13:1011613..1015738+ (Porterinema fluviatile SAG_2381)
ATGGGCATTGCTTCTTCGAGATGGGCATTGCTTCTTCGAGATCCCCAGCA
ATGGCGTACAAGGACGGAAGTATTTGGTGCTCCGCGTTCGATGATGCAGG
CAACAGGTGCTGATCCCCAGCAATGGCGTACAAGGACGGAAGTATTTGGT
GCTCCGCGTTCGATGATGCAGGCAACAGGTGCTGGGTAAACAGCCAGACG
GGAGAGAAAACGTACCACCTCGTGGGCGGCCGGGCCGTCAGGCGTCCGTC
CAACACCTCCGTTAGGCGCCCGTCCAACACCTCCATGGCGTCTCCCTACG
CCATGCAAAGCCCGAGCCGACCCTGGGCCGGCACGACAACCCCCGTGCCC
CACTCTCCCGGGGGTCCCGTCATGCACAGCCCCGGCCCCGCCATGCACAG
CCCACACCACAACAACGGCGCGACCTGGGTCCACCCCAACAGCCCGCATC
ATGGCGCGGTGACCATGGCTCACCCTCACAGCCCCCACCACCCCGGGATG
GCGATGTCCCACCCTCACAGCCCGGGCCCCGCGGCGCTCGCTACGGGCTA
CGGCGGTGCCCCGGGATACGGAACGCCAATGGTCGCCTACCAGTCGCCGC
AGCCTGCGTACGGCGCCCCCCCCGCCGCCGACGCCGGCCCGGTCCCCACT
CGCGAGGGCGAGGCCGTGGGCTACCGCTCGAGCAAGTATTACGTCAGGCC
TCGGTCGAAGATGTCGTGGATGTGGACCGAGCAGCGATGAGGTAAACAGC
CAGACGGGAGAGAAAACGTACCACCTCGTGGGCGGCCGGGCCGTCAGGCG
TCCGTCCAACACCTCCGTTAGGCGCCCGTCCAACACCTCCATGGCGTCTC
CCTACGCCATGCAAAGCCCGAGCCGACCCTGGGCCGGCACGACAACCCCC
GTGCCCCACTCTCCCGGGGGTCCCGTCATGCACAGCCCCGGCCCCGCCAT
GCACAGCCCACACCACAACAACGGCGCGACCTGGGTCCACCCCAACAGCC
CGCATCATGGCGCGGTGACCATGGCTCACCCTCACAGCCCCCACCACCCC
GGGATGGCGATGTCCCACCCTCACAGCCCGGGCCCCGCGGCGCTCGCTAC
GGGCTACGGCGGTGCCCCGGGATACGGAACGCCAATGGTCGCCTACCAGT
CGCCGCAGCCTGCGTACGGCGCCCCCCCCGCCGCCGACGCCGGCCCGGTC
CCCACTCGCGAGGGCGAGGCCGTGGGCTACCGCTCGAGCAAGTATTACGT
CAGGCCTCGGTCGAAGATGTCGTGGATGTGGACCGAGCAGCGATGA
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