mRNA_P-fluviatile_contig13.1707.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1707.1
Unique NamemRNA_P-fluviatile_contig13.1707.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1707.1 vs. uniprot
Match: D7FKJ9_ECTSI (PIH1_CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKJ9_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.770e-48
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    4 TYTLVESGAFDMADHTADRVRQRPTPQKIIATVTLPANAEPTRKLDVVVATRRLTIGVLGDPEGDPPRYLDIPLPYDVEDDSQCSAARDKSGLLKITMPVKPTVAP 321
            TY LVESGAF+++DHT DRVRQ PTP+ ++ TVTLPA+A PTRKLDVVVA RRLTIGVL DPEG  PRYLD+PLPYDVED+S+CSAARDKSGLLKITMPVK   AP
Sbjct:  109 TYKLVESGAFEISDHTTDRVRQTPTPRTLVVTVTLPADAGPTRKLDVVVAVRRLTIGVLSDPEGSSPRYLDLPLPYDVEDESKCSAARDKSGLLKITMPVKQPAAP 214
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BLAST of mRNA_P-fluviatile_contig13.1707.1 vs. uniprot
Match: A0A6H5JI76_9PHAE (PIH1_CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI76_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.890e-46
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:    1 TTYTLVESGAFDMADHTADRVRQRPTPQKIIATVTLPANAEPTRKLDVVVATRRLTIGVLGDPEGDPPRYLDIPLPYDVEDDSQCSAARDKSGLLKITMPVKPTVAP---VPAPKPPA 345
            TTY LVESGAF+++DHT DRVRQ PTP+ ++ TV LPA+AE TRKLDVVVA R+LTIGVLGDPEG  PRYLD+PLPYDVEDDS+CSA RDKSGLLKITMPVK   AP   VP P P A
Sbjct:   77 TTYKLVESGAFEISDHTTDRVRQTPTPRTLVVTVILPADAESTRKLDVVVALRKLTIGVLGDPEGSSPRYLDLPLPYDVEDDSKCSAVRDKSGLLKITMPVKQPAAPPLTVPPPLPAA 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKJ9_ECTSI1.770e-4878.30PIH1_CS domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JI76_9PHAE2.890e-4674.58PIH1_CS domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:892417..895687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPIH1 family
Ec32 orthologEc-12_001800.1
Hectar predicted targeting categoryother localisation
Exons3
Model size374
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1707.1prot_P-fluviatile_contig13.1707.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 892419..895687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.77921-CDS-P-fluviatile_contig13:892418..8925841622815549.77921-CDS-P-fluviatile_contig13:892418..892584Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 892419..892584 -
1693562222.843904-CDS-P-fluviatile_contig13:892418..8925841693562222.843904-CDS-P-fluviatile_contig13:892418..892584Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 892419..892584 -
1622815549.7913446-CDS-P-fluviatile_contig13:894029..8941151622815549.7913446-CDS-P-fluviatile_contig13:894029..894115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 894030..894115 -
1693562223.012532-CDS-P-fluviatile_contig13:894029..8941151693562223.012532-CDS-P-fluviatile_contig13:894029..894115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 894030..894115 -
1622815549.8019037-CDS-P-fluviatile_contig13:895567..8956871622815549.8019037-CDS-P-fluviatile_contig13:895567..895687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 895568..895687 -
1693562223.0234962-CDS-P-fluviatile_contig13:895567..8956871693562223.0234962-CDS-P-fluviatile_contig13:895567..895687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 895568..895687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1707.1

>prot_P-fluviatile_contig13.1707.1 ID=prot_P-fluviatile_contig13.1707.1|Name=mRNA_P-fluviatile_contig13.1707.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
TTYTLVESGAFDMADHTADRVRQRPTPQKIIATVTLPANAEPTRKLDVVV
ATRRLTIGVLGDPEGDPPRYLDIPLPYDVEDDSQCSAARDKSGLLKITMP
VKPTVAPVPAPKPPAVPNIQAATP
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mRNA from alignment at P-fluviatile_contig13:892417..895687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1707.1 ID=mRNA_P-fluviatile_contig13.1707.1|Name=mRNA_P-fluviatile_contig13.1707.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3271bp|location=Sequence derived from alignment at P-fluviatile_contig13:892417..895687- (Porterinema fluviatile SAG_2381)
ACGACGTACACGCTCGTGGAGAGTGGGGCCTTTGATATGGCGGACCACAC
GGCGGACAGGGTAAGGCAGCGACCCACGCCGCAGAAGATCATTGCGACGG
TTACTCTTCCGGCCAACGCGGTGAGCGAGTGGATGAATGGAGGGTTGTGA
GGCTTTTGTTTTGTTATGAGGAAGAAGGGGGGGAAGAGGGAAAAGGAAAG
GGGATTTCATCTGTTGTCTGCCGTTCATATTTGGCCATGGGTCAAGAACC
GCCATCGAGACAGACCAGGGCTCCTTAACTTGACGACAGCTACTATCAAA
TCAACACGCGGGCGCCCTCTTTAGGTCTCTTCTTCGCCGACGGTTGAAAC
AAAATCGTGCTCAATTTGTTCACCGCGTGTGCTGCACGGCTCGTGGCCAT
CACCGATGCTTTTGGCCATCGTCGATCACTCATTGCAGCGGCCGGTTTCG
CGCTGTCGTTGAATGCAGTACACCGGAGCCGGGGGGGGAGTAGGCTCACT
CGTTTGTTTGATTCGATCTGTTTTCCGGATACCGATGGTCAACCTTAAAT
GTCGGACGCGATTATCGCGGGGACGTTCCACAGGCACGGTCAAGATAGAC
ATCGGTGTCGGCAGGATGTTGGCAGGAACCCTCGTGCGCTCTCGTTTCAC
GGTGTGCTCCCTAGAAATTGGCGCTTTTTTTCTCAATTTTACCTCTCTCG
CTAGTCTGGTGAAGAAAGTGTCGACGAAGCGGTGAGTATGGGGGAAGCAG
AGTCAGGGCTTGGTCATTCGATGGGTTCTCCGACACGATTTTACGGCCGC
ATCCGTTTGTGCAAAGAAGAGATGTTAGCAAGTTATTGTTGCTGCGGGCG
TGCTACACAGACGGAACCTCGACGCCGCTTGCAGCAAAATCCTTCCGCTG
TGCCCACCTGCACATAGTCGTGTCTCACCAACGATTGCTCTCTCCCTCTC
CTTGTTGTCATCATTCCTTTGACGTTTTCGTGTTTCCCGGACGGAGTCTG
CCTCATTCTCACCGGTTGCTTTTCTTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTACTCTTGATGTTGTTGTTGTTGTTGTTACTCTTGATG
TTGTTGTTGATGTTGTCTTCACATTTGAACCCTTTCCTATCACCTCCAGT
ACCTTCAAATGTCCTTACACGTTCCGACCGGAACGAGTCTATGGTTACAG
GCTAAAAAACAAAAAATATCCTGCAGAGGAGCAAAAAAGTAGCGAAACGA
AACTATAGATCAAAAGATAAAATAGAAGCAGGCTAAAGCAACCCAGCAGA
AGTTACAAAACTGTGCGGTTTGTGCACATCATTTGTGTTACCTGTGTTTG
AAATGAACGATGCCGGCCTGCTTGCTTGCTTGCTTGCCTGCTTGCCTGCC
TGCCTACTTGCTTGCTCCCACGGTTGAGTGTCACAGAAGCATCCCTCTGG
GGAATGCAGCTCTGATGTCGACCGGCCGCTCTCGTTCGTGCCGCCAGTAT
CCATTCATGGCTATCCTTGTCATTGTCCTTGTAAGTACGCCATCGTGATT
TGCGCCGTCCCCGTGCCCACAGGAGCCGACACGCAAGCTGGACGTTGTGG
TGGCCACGCGGAGACTTACGATCGGCGTGCTCGGCGACCCAGAGGGAGAC
CCTCCGAGGTGAGGAGAAGGAAGCAGGGGGGAAAGCTACCCCGTGCGTGT
CTGCGTGCACCGCACAAGAATCGCGCACTCATTTTTTTTTGTGTCAAGAG
AGGAAAGAAAAGCGCTGCAGCGCTCTCGTCTATTGGCATCGTTTTGTCTT
CAAGCGATAGGAGAGAGGGACGGGATGGCAAGCAGCAAGGACGTAGCTGA
AGCTGCAGCAGCAGCGGTAGCACCGCTAGCGACAGCATCGGCAGCGGCCT
CACCGGCAGGGGACATGCCGACTTCATCCCTGCCGCTCACGAAAGAGTGA
CGAGTCTCACGTGGAGGGCAGCTGGCGCAAGGAAGTCGATACATCATCTC
TCGTGCTTGTGAAGCCCACCGGGCACGGAGGTCTCAACCGCCGCCCCAGT
CTTTCTTTCGGTATTTTGCTCTGAACGTCAAAACATACGGTGGATCAACC
TCCACAAATCCTCTCGTTACGGGCCCTGGCTGAACGCCGGAGGGAAAGTG
GAAGTTTACGTCGCTCCGTGTCATGAGGGTCTCCTGAATTTCTTGCTTTG
TAGTGCCTTCAAAAAACGAAAGCTTTTGAACACCTTGTCGGCGCATCTCG
GCCTTTGGCTTCTCCCCCTTGCTCCGCATTTGCGTCCCCCCCCGCTCCCG
CCCCCCCCACGCTCTCGAAAGGGATGCATCCGCCCGATGGCGCGGCAAGA
GGTTGGGTGGGCGCCGGAATGGCGACGGCGCTGTAAAACATGCTGGTCAC
CTCGTGAGCTAGCAACCAGGTTGCCGCTTTCATTTTCTCGCTATTTTTTG
GGGGCAACAACCATGATGGTGGTCGAGCAAAACCATGTGTGCGGGGTGGT
TAATTTAACTCCGCACATGGGGCATCGTCGTACCAAGGAGTGTTGAAATG
GTGATGCACCCGCGAGGCACTGCCGTAGTACATTCCAATGATTGTTGTTG
GGGCGGTACCAAAAAGCGAATTGCAGCTCAGCTGAGGCTATCATCCGTGT
GCAAGGTCAGTAAGCCTTTAGCCGGACATTATTTGTAGGATGCTGCCCAC
CCTTCATGCGACTCGCCGAATGCATCATGGCGCTTCGCGCTTGGTGAATG
AAAGGGCCTGGGCCGTTGAAAACCCTGAAAATCGCTCCGTGCCGGGCTCG
TAGGGAACCGAAGACTATGGCCAAACGGCCACCGCGTGCGTGAACTGAGT
ACCCCCCCCCCTCATCTCCTCCCCGACTCTCACGTAATCAACTTGTTATG
CTGTCGCCACCGTAAGTTATAAATTGCAAAGTTCGCGGGAATGTTCACCT
TCCGTTTCATTTGTTTTGTGTTTTCGGGCTTCGTCTACTGCTGTTGTGCG
CTAGACCAAGCTGATGTCACGCCAAAGCCTTCCGCGCCGCCCGCCCGCCC
GCCCGCCTGCCCTCCCGTCCTGCCGTCCGCCCGGGGTGGGGTGTTCCCGC
CAGGTATCTCGACATCCCCCTCCCGTACGACGTCGAGGACGACTCCCAGT
GCTCGGCGGCCCGCGACAAGTCCGGCCTGCTCAAGATCACCATGCCGGTC
AAGCCGACGGTCGCGCCCGTCCCGGCGCCGAAGCCTCCAGCGGTGCCGAA
CATCCAGGCGGCGACGCCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:892417..895687-

>mRNA_P-fluviatile_contig13.1707.1 ID=mRNA_P-fluviatile_contig13.1707.1|Name=mRNA_P-fluviatile_contig13.1707.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig13:892417..895687- (Porterinema fluviatile SAG_2381)
ACGACGTACACGCTCGTGGAGAGTGGGGCCTTTGATATGGCGGACCACAC
GGCGGACAGGGTAAGGCAGCGACCCACGCCGCAGAAGATCATTGCGACGG
TTACTCTTCCGGCCAACGCGACGACGTACACGCTCGTGGAGAGTGGGGCC
TTTGATATGGCGGACCACACGGCGGACAGGGTAAGGCAGCGACCCACGCC
GCAGAAGATCATTGCGACGGTTACTCTTCCGGCCAACGCGGAGCCGACAC
GCAAGCTGGACGTTGTGGTGGCCACGCGGAGACTTACGATCGGCGTGCTC
GGCGACCCAGAGGGAGACCCTCCGAGGAGCCGACACGCAAGCTGGACGTT
GTGGTGGCCACGCGGAGACTTACGATCGGCGTGCTCGGCGACCCAGAGGG
AGACCCTCCGAGGTATCTCGACATCCCCCTCCCGTACGACGTCGAGGACG
ACTCCCAGTGCTCGGCGGCCCGCGACAAGTCCGGCCTGCTCAAGATCACC
ATGCCGGTCAAGCCGACGGTCGCGCCCGTCCCGGCGCCGAAGCCTCCAGC
GGTGCCGAACATCCAGGCGGCGACGCCCGTATCTCGACATCCCCCTCCCG
TACGACGTCGAGGACGACTCCCAGTGCTCGGCGGCCCGCGACAAGTCCGG
CCTGCTCAAGATCACCATGCCGGTCAAGCCGACGGTCGCGCCCGTCCCGG
CGCCGAAGCCTCCAGCGGTGCCGAACATCCAGGCGGCGACGCCC
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