mRNA_P-fluviatile_contig13.1689.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1689.1
Unique NamemRNA_P-fluviatile_contig13.1689.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1689.1 vs. uniprot
Match: D7FKI9_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.580e-10
Identity = 74/185 (40.00%), Postives = 86/185 (46.49%), Query Frame = 3 
Query:  108 KRWLDAANFVDKRDSSGRTGLHQASWSGRLEVINLLLGAYAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------IHDAENNIAGDAFDTKVPAKSRERIIALRNDRLGELAAAKATAEAIRLAERAKTG-PREK 614
            +RWLDA NFVDKRDSSGRTGLHQA+                 XXXXXXXXXXXXXXXXX                                                                  I D  NNIAGD F+ KVP ++R+++IA+RN R  E+A AK   EA+RLAERAKTG PR +
Sbjct:   27 QRWLDAGNFVDKRDSSGRTGLHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGHLAVVKNQLKKSSVPLANDEQVLLGFKANINAVDFNGDTPLSKAARAGMVDVIDALLAAGAEIEIRDVGNNIAGDVFNKKVPLETRDKVIAMRNSRQQEIAVAKQREEAVRLAERAKTGQPRNR 211
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BLAST of mRNA_P-fluviatile_contig13.1689.1 vs. uniprot
Match: A0A835ZH54_9STRA (Ankyrin repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH54_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.880e-8
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  108 KRWLDAANFVDKRDSSGRTGLHQASWSGRLEVINLLLGAYAE 233
            +RWLD   FVDKRD+  RT LHQA+WSGR+E + LLLGAYA+
Sbjct:   31 QRWLDEGLFVDKRDNFERTPLHQAAWSGRVEAMKLLLGAYAQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKI9_ECTSI1.580e-1040.00Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A835ZH54_9STRA4.880e-866.67Ankyrin repeat protein n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:749905..754525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue3.4e-27
Seed eggNOG ortholog2880.D7FKI9
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001890.1
Exons7
Model size1064
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.0742574-UTR-P-fluviatile_contig13:749904..7503091622815547.0742574-UTR-P-fluviatile_contig13:749904..750309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 749905..750309 -
1693562214.6634066-UTR-P-fluviatile_contig13:749904..7503091693562214.6634066-UTR-P-fluviatile_contig13:749904..750309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 749905..750309 -
1622815547.1425118-UTR-P-fluviatile_contig13:752975..7530591622815547.1425118-UTR-P-fluviatile_contig13:752975..753059Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 752976..753059 -
1693562214.7281728-UTR-P-fluviatile_contig13:752975..7530591693562214.7281728-UTR-P-fluviatile_contig13:752975..753059Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 752976..753059 -
1622815547.1546097-UTR-P-fluviatile_contig13:753841..7539311622815547.1546097-UTR-P-fluviatile_contig13:753841..753931Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 753842..753931 -
1693562214.7362998-UTR-P-fluviatile_contig13:753841..7539311693562214.7362998-UTR-P-fluviatile_contig13:753841..753931Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 753842..753931 -
1622815547.1649368-UTR-P-fluviatile_contig13:754415..7545251622815547.1649368-UTR-P-fluviatile_contig13:754415..754525Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 754416..754525 -
1693562214.7462158-UTR-P-fluviatile_contig13:754415..7545251693562214.7462158-UTR-P-fluviatile_contig13:754415..754525Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 754416..754525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.0854445-CDS-P-fluviatile_contig13:750309..7503681622815547.0854445-CDS-P-fluviatile_contig13:750309..750368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 750310..750368 -
1693562214.6747-CDS-P-fluviatile_contig13:750309..7503681693562214.6747-CDS-P-fluviatile_contig13:750309..750368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 750310..750368 -
1622815547.0959482-CDS-P-fluviatile_contig13:751090..7512051622815547.0959482-CDS-P-fluviatile_contig13:751090..751205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751091..751205 -
1693562214.684342-CDS-P-fluviatile_contig13:751090..7512051693562214.684342-CDS-P-fluviatile_contig13:751090..751205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751091..751205 -
1622815547.105795-CDS-P-fluviatile_contig13:751436..7515141622815547.105795-CDS-P-fluviatile_contig13:751436..751514Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751437..751514 -
1693562214.6938496-CDS-P-fluviatile_contig13:751436..7515141693562214.6938496-CDS-P-fluviatile_contig13:751436..751514Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751437..751514 -
1622815547.1157863-CDS-P-fluviatile_contig13:751768..7518671622815547.1157863-CDS-P-fluviatile_contig13:751768..751867Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751769..751867 -
1693562214.7084808-CDS-P-fluviatile_contig13:751768..7518671693562214.7084808-CDS-P-fluviatile_contig13:751768..751867Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 751769..751867 -
1622815547.1262448-CDS-P-fluviatile_contig13:752951..7529751622815547.1262448-CDS-P-fluviatile_contig13:752951..752975Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 752952..752975 -
1693562214.7181988-CDS-P-fluviatile_contig13:752951..7529751693562214.7181988-CDS-P-fluviatile_contig13:752951..752975Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 752952..752975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1689.1prot_P-fluviatile_contig13.1689.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 750310..752975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1689.1

>prot_P-fluviatile_contig13.1689.1 ID=prot_P-fluviatile_contig13.1689.1|Name=mRNA_P-fluviatile_contig13.1689.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
MGHQAVVKVLLDFKAEIDAVDLKGETPLSKAARAGMVDVVEVLLTAGAKI
DIHDAENNIAGDAFDTKVPAKSRERIIALRNDRLGELAAAKATAEAIRLA
ERAKTGPREKQRVDGSGCVGCSIS*
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mRNA from alignment at P-fluviatile_contig13:749905..754525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1689.1 ID=mRNA_P-fluviatile_contig13.1689.1|Name=mRNA_P-fluviatile_contig13.1689.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4621bp|location=Sequence derived from alignment at P-fluviatile_contig13:749905..754525- (Porterinema fluviatile SAG_2381)
ATTTTGAGGCCAAGGCTGTGTAACCGTTGGTGCAGGGTGGCGGCGTGGCG
GCTTGGCGGCGTATCGCGTATTTTCCGCAATGCTCTATCTCTCTATGCGT
AGTTCACAAGGTACCAGCCATGGTTGTTCCACGGTGTCCGGAGAAAACCT
TTCATATCGCCTGCATGGATGGCGATGTACCGGCGGTGCAGGTTAGCAGT
TAGCAATGCCGTGTCGCCGTGTTGATGAGCACTTCTTGAAAGAAAGAAAC
AACGCATGTGAGCAGTTAAGACGACACCGAGGCGGGACACAACAGTTTTT
ACAGCAATGGGCAGTTTGTGTATGTCGGCGAGTCAATAGCGGCACCCTTT
GAACCTTGCACTGATAGGTTGTAAACTACTGCTTGGCTTTGCCCTGAGCA
GATGCGGCGGGGGTTGTACATGTGGTCCCTGCGCGCCGACCAGAAATGTC
AGCAGCGGCCGGTGTGTCGGAATGTTTACGACAGACTCCGCCACACTACT
CACACTCAAGTGGCAGCTCATCATCTCTTCGCTGCGACTCACGGAATGCG
TACGCTCCTTGAACACATGATCGCTTGCCTGCCGGCGATTGCAGCGGTGG
CTTGACGCGGCCAATTTTGTGGACAAACGAGATAGTAGTGGAAGAACGGG
ACTTCACCAAGCCAGCTGGAGCGGGAGGCTTGAGGTGAAGAGCAAACAAA
GCTTCATGGCACGAGAGAGCTAAGCGTTGCCGTCAGAACGCCTTGGTCTC
AGGGCGGCCCCCGGCAAGATTTGAAATCGCGCGTGTTATTCCAGCACGAC
ACTTGCTTCGCTGAAGTTCCTCGCAACAAATCATGAACAAGATTATCATC
GACGTAGACTAAATGCATTTACGAAAAACACCAGACCAAAAGTCGGCGTA
TCAATAGACCTTCGAGCAGTAGGGAGTGCAGCTTGTACCTGCAACGTTGC
AACATTGAAATTAGCTACGCGTTGTTTTCTCTAGAGCGTCCTGGCATTGA
ATTGCGACCAGAGCTTTCCGTGAAATAGAAAGACCTGGCGAAAATATACA
TTACTTCAAACAGTGCTTGCCCTGCGAATCGCTGGAGACGAAGGGGATCG
TATGGGGGCGTACTCATGTTTTGCATGCCTTAGTTGTTAGACCGTTGACC
ACGCGTCCTCGAGGGGACGGAGCAAAAGAGCGGATCGTATGGGGGGACGC
TAAATTCAAAACTGGAAAGGGGATCGTGTTTCTCATCTGCGGACGCTAGT
TTGGAGATGGCTGTACGAGATGAAAGTTGCTGTCTGCGTTCGTTTGAGCT
CAGGGATATTTGATTTTGTACCCTTTTCTTTGGCTCGTCAGTAGACTTGA
TTTTGGGAGTTGACAGGGATAACGATAAACTCCGCTTGTGTCCTTTCCCT
TCGTCATCTAAAATACGGGTGTATGAAACAATGCACTTTTGTGCTATCTC
CTCATTACAATTCAAGGTGATCAATTTGTTGCTGGGTGCATACGCTGAGG
TGGATGCTCGAGACAATCAAAGGAGGACGCCTCTCCATTTGTGCAGTGAA
ATGGGACACCAGGCTGTCGTGAAGGTGCGCGAATACTCAACATTCTTCAC
GTGCAGAGCCTTTCCGTGCGCCTTAAGACTGCTTGTATGGAAAACCAATT
ACTATGCAACACGACATTCGTTGCTTTGTCAGCTCACCCCTGCGATTCGC
CATGCCGACAAAGACGGGGTCTCATTGTACGGGCGGTGACTGTAGGTGGG
ATAAACACGATGATGGCACGTGATATCGACGTATCACGTGTTCGGAAGGC
GATGAGTAATAGATCTTCACACTCAGGCAGTCGAGCCGTACAGTATCTTA
TCCCAACCGCGTGAGGGGGTACGGGGTCGATGTCCCTCCATCCCCGTCTC
CCCCTCCGAGGTTTCAACCCAATCGAGCACTCATCAGTGCTGCCAAGCAA
ATGAAAGTCATTGAGCCAAAGCCAATGTGCAAACTATTGCGAGCCATTGC
TGTGAGAGCATACTGATCGTTGCGGGTGTATCTTGTGGAATACGCTGTGA
ACCCTTTTGAGCGCTTGTGAGGACCCCGTGCTGTGCCGCTTTACCCTGAG
ACTAACTGCGCGAAGTCTTGGAGCTCAATAATGTAAAATGATGTGCCCAA
TTATTTATTTCCCGAAGTACTGCACTTGCTGGTACATCATGAGGGAAGCC
GTCGTCTGGCTTTTGGAAATGATAAGTTGGTATGAATCAACTTGATTTTA
CATTAACCTTCCACTGTTCCCCACGACTAGGGCTCACGTCGGAACATCAC
CTCTAGCCGAAGGGTCGACTTTGGCACCTTACCAAGGTCGGGAACGAAGA
GAAAGTTGGCCTTGGAGTCGAAGGAATGCAAGTCTTGAACAAAGCAGGAA
GACACAAACTATGAAGCAGTTAATTTTTTTCGTCGTTTCGAAATATTCCA
CATTTGGCAAGACCCAACCACATGTACAGATTGTCGTGCGGGTAGTGCAT
GTCCGTGCACCATATGTGCCGGCAAGAATATGCGTAATTAATAGTTGATC
TCCACCAAAATGTACACGGACAGCTATCTGGTTCTTGAGCGTTCCGTAGC
CTTGATGACGAGTCGTTTTCTTCTCTCCGTACGCCGGATGGCTCGAAACG
ACGTACAGGTTTTGTTGGACTTCAAGGCTGAGATTGACGCAGTTGACTTG
AAGGGCGAAACGCCATTGAGCAAGGCGGCAAGGGCGGGGATGGTTGACGT
GGTCGAGGTGAGTCATGCCACGCCAACGTGTGGTGGATTTGGATCAGCAC
ATCCTCGTATGACAGTTTGCCCCTCGACCATACCATATCTTGTCTTGTAA
AAATGTTGATGGATTTATCCGCGGCGAAGCAATTCCATCGAAATGCTCAC
CGGGTCGGGTCAAGCTCAAATATTACTTGGGCGCATAGTCCACTTTGAAA
TTTGTCCCTCGTTTCCGAGACGTCATCAGGATTTCGTTCTCCCCTTTGTG
GCATGACTCAGGTGCTGCTGACGGCGGGTGCTAAAATCGATATTCACGAC
GCTGAAAACAATATTGCCGGTGATGCTTTTGACACGAAGGTATGCTTTCC
GGCAGCGTTTTGTTTCACGAGGGCGCTTGAAAAGCTCATTGCCTGGGAGA
GAGCTCACTGACCAATGCGTAAAAGCAGCAGTTGATAGGGCGATACTCTT
TCAACCCTCAACTCGAAATTCTCAGGATGGCTACCATCCAAGGGCGAAGA
CCAAGCATTCTGAGCCGTGTCAAGAATCGACTTTTCTAAAAACGGGCGAA
CCCTTTGTGTACAAGCGCAGGTGCCCGCGAAAAGTCGGGAGAGAATAATC
GCGCTGAGAAACGATCGGCTAGGGGAACTTGCCGCGGCCAAAGCAACGGC
AGAGGCAATTCGATTGGCAGAGCGTGCCAAAACCGGTGAGCCTTGGAGGT
ATGTGTTATGGAAATGTGAACACATACTTGGAGTAGCCAGTACGAGTCAA
TGTTCAGTAGCCCTGCTCTTGAAAATCGTAAATCATTGTTGGTCTCTTAT
AAATCGGTTCGATTGTAAAGAACGTATGTTTATGCGAAGGAATTAACTCC
GTAGGGTTCTCCCTCTACTTCTAGCCGAGTTGCTTCCTGTCTTGTGTGGA
GGCTTCCGGATTGCCATGGTTTCATAGCTGTCCTGGTCATCTCTGGGAAG
CGGCCACCCACTGCGCTCTTGCATACTCTGCGGTAAATCTCTGTGTTGGT
CATCTAAGCGCCAGAGTTAACTGCTACCCTCCGAATTATTCAACATCTTC
CCTACACATTGGATTCACTCTCGTCTTCCGGGTTACCCTCTCGCACGGGT
CAACACCTCGATCAACGTCGTCGACTCGGCCACTAGAAATAGCGACTGTG
TCAGGAAATCATACAGTATCCATAACAGTATGCGCAGTCCAGATTGCTGT
GGAAGGTAGTTACTTCGAAGGCGAGCAATCACAAAATTCTTCGACAAAAC
TAGGCGGTACCTCCACGCTGTGCGGACGATCATCCGAGCGTTCAGCATAC
ATGGATGAGCGCAGAGGACATGTTCTGTGCGAATCTTGACGAACCTCAGT
TTGACAGTGACGCCCCACATTCAGAATCTGGTCTTCAACCTTTCATGTTT
TCGGCAGGTCCGAGGGAAAAGCAGCGTGTGGACGGGAGCGGTTGCGTCGG
TTGCTCCATATCCTAACGATATGCTGTCCGCCACAGATTTCTGTGCGAGA
TCGCGAGCTATCCGTTGCACTTTACTTCAAAGCGTGTGGCATTGGCAGGA
AGACCTGTTGAAGTGCAACATCTGGTTACTTGTACCACACCCGCACGGCG
CGAGAGCTGTGTACTTGTGCCGCGATCTTGGATACCTTTTGTTAGAGCGT
TTTCGACAGCAATGGTAAATTCAGAGATCAGCCTTACAGCATAGTCTTGA
CCAGTGGATTACTAAAGTTTCTCACCAAGCTGTGCAACTTGGATACCTTT
TGTTAGAGCGTTTTCGACAGCAATGATAAATTCAGAGATCAGCCTTACAG
CATAGTCTTGACCAGTGGATTACTAAAGCTGTGCAATCAGCCATCACTCT
TGCCAGGTGAAGAGAAGGTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:749905..754525-

>mRNA_P-fluviatile_contig13.1689.1 ID=mRNA_P-fluviatile_contig13.1689.1|Name=mRNA_P-fluviatile_contig13.1689.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig13:749905..754525- (Porterinema fluviatile SAG_2381)
ATGGGACACCAGGCTGTCGTGAAGATGGGACACCAGGCTGTCGTGAAGGT
TTTGTTGGACTTCAAGGCTGAGATTGACGCAGTTGACTTGAAGGGCGAAA
CGCCATTGAGCAAGGCGGCAAGGGCGGGGATGGTTGACGTGGTCGAGGTT
TTGTTGGACTTCAAGGCTGAGATTGACGCAGTTGACTTGAAGGGCGAAAC
GCCATTGAGCAAGGCGGCAAGGGCGGGGATGGTTGACGTGGTCGAGGTGC
TGCTGACGGCGGGTGCTAAAATCGATATTCACGACGCTGAAAACAATATT
GCCGGTGATGCTTTTGACACGAAGGTGCTGCTGACGGCGGGTGCTAAAAT
CGATATTCACGACGCTGAAAACAATATTGCCGGTGATGCTTTTGACACGA
AGGTGCCCGCGAAAAGTCGGGAGAGAATAATCGCGCTGAGAAACGATCGG
CTAGGGGAACTTGCCGCGGCCAAAGCAACGGCAGAGGCAATTCGATTGGC
AGAGCGTGCCAAAACCGGTGCCCGCGAAAAGTCGGGAGAGAATAATCGCG
CTGAGAAACGATCGGCTAGGGGAACTTGCCGCGGCCAAAGCAACGGCAGA
GGCAATTCGATTGGCAGAGCGTGCCAAAACCGGTCCGAGGGAAAAGCAGC
GTGTGGACGGGAGCGGTTGCGTCGGTTGCTCCATATCCTAAGTCCGAGGG
AAAAGCAGCGTGTGGACGGGAGCGGTTGCGTCGGTTGCTCCATATCCTAA
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