mRNA_P-fluviatile_contig13.1679.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1679.1
Unique NamemRNA_P-fluviatile_contig13.1679.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: D7FRN0_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN0_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 3.460e-104
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 2 
Query:  194 MSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPPAA 676
            MSGIA  RLKQERK+W++DPDRPFGWWTR  A  DGS  +MKWECGLPGPKNTNWEGGEYRI MEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE  GWRPSITIKQMLHGIFELLDNPNPDDPAQSEAY+LFV+N+ EYDRRV +EAKKNPPAA
Sbjct:    1 MSGIAAARLKQERKDWRRDPDRPFGWWTRLSANPDGSSSIMKWECGLPGPKNTNWEGGEYRIHMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 161
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: D7G3Z7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z7_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.170e-74
Identity = 110/160 (68.75%), Postives = 131/160 (81.88%), Query Frame = 2 
Query:  194 MSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPPA 673
            MSGIA  RL++ERK W++D   P G+  +   K D S  +++WECGLPGP +T+W GG Y +TMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSIL+ED GWRP+ITIKQML GI +L D PNP+ PAQSEAY+LFV N++EY RRVRLEA+KN P+
Sbjct:    1 MSGIAEARLREERKAWRRD--HPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPS 158
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A7S3NHG5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHG5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.430e-74
Identity = 105/159 (66.04%), Postives = 127/159 (79.87%), Query Frame = 2 
Query:  194 MSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPP 670
            MSGIA  RL +ERKNW++D   PFG+W R   K DG+  +++W+CG+PG K T+WE G YR+ MEFTEDYPSKPPKCKF PPLFHPNVYPSGTICLSILNED  WRP+ITIKQML GI +LLD PNP  PAQ  AY+LF++++  Y +R+R EA+KNPP
Sbjct:    1 MSGIARGRLAEERKNWRRD--HPFGFWARPALKPDGTTSLLQWDCGIPGKKGTDWENGVYRVRMEFTEDYPSKPPKCKFTPPLFHPNVYPSGTICLSILNEDQDWRPAITIKQMLLGIQDLLDTPNPRSPAQDAAYKLFINDKNAYSQRIRQEARKNPP 157
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A6U0IJL9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IJL9_9STRA)

HSP 1 Score: 234 bits (597), Expect = 6.920e-74
Identity = 106/158 (67.09%), Postives = 133/158 (84.18%), Query Frame = 2 
Query:  200 GIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPPA 673
            GIA  RL +ERKNW++D   PFG++ R  +K DGS  +MKW  G+PG +NT+W GG Y++T+EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE+ GWRP+ITIKQML GI +LLD+PNP+ PAQSEAY+LF++N+ EY RRV+ EA+KN P+
Sbjct:    4 GIARGRLAEERKNWRRD--HPFGFYARPESKGDGSSNLMKWATGIPGKENTDWSGGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYQLFMNNKPEYKRRVKAEARKNAPS 159
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.010e-73
Identity = 106/157 (67.52%), Postives = 132/157 (84.08%), Query Frame = 2 
Query:  200 GIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPP 670
            GIA  RL +ERK W+KD   P G++ R  +  D S+ +MKW+CG+PG  +++W GG Y+++MEFT++YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNED GWRP+ITIKQML GI +LLDNPNP+ PAQSEAY++FV+NR EY+RRVRLEA+KN P
Sbjct:    4 GIARARLAEERKAWRKD--HPIGFYARPVSNPDNSMNLMKWDCGIPGVASSDWAGGVYKLSMEFTDEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A448ZL65_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZL65_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.840e-73
Identity = 105/158 (66.46%), Postives = 132/158 (83.54%), Query Frame = 2 
Query:  197 SGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPP 670
            SGIA  RL +ERK W++D   PFG++ R  +K DGS  +MKWE G+PG + T+WE G ++++MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE+ GWRP+IT+KQ+L GI +LLD+PNP+ PAQSEAY+LF+HN+ EY RRV+ EA+KN P
Sbjct:    3 SGIARGRLVEERKAWRRD--HPFGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLFIHNKTEYKRRVQAEARKNTP 158
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A6U3QUR4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QUR4_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.210e-73
Identity = 107/161 (66.46%), Postives = 131/161 (81.37%), Query Frame = 2 
Query:  191 AMSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPPA 673
            A  GIA  RL QERK W+KD   P+G++ +  +  DGS  +MKWECG+PG K+T WEGG + +TM+FT++YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE+  WRP+ITIKQML GI +LLDNPNP+ PAQS+AY+LFV + +EY +RVR EA+KN PA
Sbjct:    2 ASGGIAKGRLSQERKAWRKD--HPYGFFAKPLSSQDGSTNLMKWECGIPGKKSTGWEGGLFTVTMDFTDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEDWRPAITIKQMLVGIQDLLDNPNPNSPAQSDAYQLFVSDEREYQKRVRQEARKNTPA 160
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A7S2Y0C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 7.790e-73
Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = 2 
Query:  176 CRNIRAMSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPP 670
            C  + A  GIA  RL +ERK W+KD   P+G++ R     D S  +MKWECG+PGP+ T+WEGG Y++TMEF+E+YPSKPPKCKFVPPLFHPNVYPSGT+CLSILNE+  WRP+ITIKQML GI +LLDNPNP+ PAQS+AY+L++ +R EY+RRVR+EA+KN P
Sbjct:    6 CSRMSA-GGIARGRLIEERKAWRKD--HPYGFYARPMMSDDNSTNLMKWECGMPGPEGTDWEGGMYKLTMEFSEEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEEEDWRPAITIKQMLLGIQDLLDNPNPNSPAQSDAYQLYITDRAEYNRRVRMEARKNIP 167
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A7S4HWQ1_9STRA (Hypothetical protein n=3 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4HWQ1_9STRA)

HSP 1 Score: 232 bits (591), Expect = 2.110e-72
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 2 
Query:  197 SGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPPAA 676
            +GIA  RL +ERKNW++D   PFG++ R  +K DGS  +MKWE G+PG + T+W  G Y++T+EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSILNE+ GWRP+ITIKQML GI +LLD+PNP+ PAQSEAY L+++NR EY RRV+ EA+KN PA+
Sbjct:   42 AGIARGRLVEERKNWRRD--HPFGFYARPTSKGDGSTDLMKWESGVPGKEGTDWATGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYNLYMNNRSEYKRRVKAEARKNTPAS 199
[Close]
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Match: A0A7S4AH06_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AH06_9STRA)

HSP 1 Score: 229 bits (584), Expect = 5.970e-72
Identity = 103/158 (65.19%), Postives = 131/158 (82.91%), Query Frame = 2 
Query:  197 SGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGPKNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRVRLEAKKNPP 670
            SGIA  RL +ERK W++D   PF ++ R  +K DGS  +MKWE G+PG + T+WE G ++++MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNE+ GWRP+IT+KQ+L GI +LL++PNP+ PAQSEAY+LF+HN+ EY RRV+ EA+KN P
Sbjct:    3 SGIARGRLAEERKAWRRD--HPFAFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLNDPNPNSPAQSEAYQLFIHNKAEYKRRVQAEARKNTP 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRN0_ECTSI3.460e-10486.96UBC core domain-containing protein n=2 Tax=Ectocar... [more]
D7G3Z7_ECTSI1.170e-7468.75UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3NHG5_9STRA2.430e-7466.04Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U0IJL9_9STRA6.920e-7467.09Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835YNI1_9STRA1.010e-7367.52Ubiquitin conjugating enzyme n=1 Tax=Tribonema min... [more]
A0A448ZL65_9STRA1.840e-7366.46UBC core domain-containing protein n=2 Tax=Bacilla... [more]
A0A6U3QUR4_9STRA4.210e-7366.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2Y0C7_9STRA7.790e-7364.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4HWQ1_9STRA2.110e-7266.25Hypothetical protein n=3 Tax=Eupodiscales TaxID=33... [more]
A0A7S4AH06_9STRA5.970e-7265.19Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:667259..673542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue3.9e-84
Seed eggNOG ortholog2880.D7FRN0
Preferred namehus5
KEGG koko:K10577
KEGG Pathwayko03013,ko04064,ko04120,ko05206,map03013,map04064,map04120,map05206
KEGG ModuleM00427
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000819,GO:0001101,GO:0002178,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008610,GO:0008641,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016604,GO:0016605,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017059,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019787,GO:0019789,GO:0019899,GO:0019904,GO:0019941,GO:0019948,GO:0022402,GO:0022414,GO:0030148,GO:0030163,GO:0031211,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033235,GO:0033993,GO:0034311,GO:0034312,GO:0034641,GO:0035339,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044388,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048285,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051231,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0090407,GO:0097164,GO:0097305,GO:0098796,GO:0098813,GO:0098827,GO:0099086,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1902494,GO:1902679,GO:1902850,GO:1903047,GO:1903182,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903755,GO:1904502,GO:1904504,GO:1905961,GO:1990234,GO:1990356,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0424@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-12_002440.1
Exons7
Model size1021
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.6669364-UTR-P-fluviatile_contig13:667258..6676001622815545.6669364-UTR-P-fluviatile_contig13:667258..667600Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 667259..667600 -
1693562212.885967-UTR-P-fluviatile_contig13:667258..6676001693562212.885967-UTR-P-fluviatile_contig13:667258..667600Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 667259..667600 -
1622815545.7628326-UTR-P-fluviatile_contig13:673349..6735421622815545.7628326-UTR-P-fluviatile_contig13:673349..673542Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 673350..673542 -
1693562213.2111824-UTR-P-fluviatile_contig13:673349..6735421693562213.2111824-UTR-P-fluviatile_contig13:673349..673542Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 673350..673542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.6794794-CDS-P-fluviatile_contig13:667600..6676671622815545.6794794-CDS-P-fluviatile_contig13:667600..667667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 667601..667667 -
1693562212.9009154-CDS-P-fluviatile_contig13:667600..6676671693562212.9009154-CDS-P-fluviatile_contig13:667600..667667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 667601..667667 -
1622815545.6943827-CDS-P-fluviatile_contig13:668132..6681731622815545.6943827-CDS-P-fluviatile_contig13:668132..668173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 668133..668173 -
1693562213.1428175-CDS-P-fluviatile_contig13:668132..6681731693562213.1428175-CDS-P-fluviatile_contig13:668132..668173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 668133..668173 -
1622815545.707827-CDS-P-fluviatile_contig13:669392..6694801622815545.707827-CDS-P-fluviatile_contig13:669392..669480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 669393..669480 -
1693562213.1541476-CDS-P-fluviatile_contig13:669392..6694801693562213.1541476-CDS-P-fluviatile_contig13:669392..669480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 669393..669480 -
1622815545.7186034-CDS-P-fluviatile_contig13:669805..6698761622815545.7186034-CDS-P-fluviatile_contig13:669805..669876Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 669806..669876 -
1693562213.1650412-CDS-P-fluviatile_contig13:669805..6698761693562213.1650412-CDS-P-fluviatile_contig13:669805..669876Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 669806..669876 -
1622815545.7284791-CDS-P-fluviatile_contig13:670330..6703991622815545.7284791-CDS-P-fluviatile_contig13:670330..670399Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 670331..670399 -
1693562213.1763895-CDS-P-fluviatile_contig13:670330..6703991693562213.1763895-CDS-P-fluviatile_contig13:670330..670399Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 670331..670399 -
1622815545.7380464-CDS-P-fluviatile_contig13:671235..6713131622815545.7380464-CDS-P-fluviatile_contig13:671235..671313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 671236..671313 -
1693562213.1859188-CDS-P-fluviatile_contig13:671235..6713131693562213.1859188-CDS-P-fluviatile_contig13:671235..671313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 671236..671313 -
1622815545.7480683-CDS-P-fluviatile_contig13:673277..6733491622815545.7480683-CDS-P-fluviatile_contig13:673277..673349Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 673278..673349 -
1693562213.1944842-CDS-P-fluviatile_contig13:673277..6733491693562213.1944842-CDS-P-fluviatile_contig13:673277..673349Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 673278..673349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1679.1prot_P-fluviatile_contig13.1679.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 667601..673349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1679.1

>prot_P-fluviatile_contig13.1679.1 ID=prot_P-fluviatile_contig13.1679.1|Name=mRNA_P-fluviatile_contig13.1679.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
MSGIAVERLKQERKNWKKDPDRPFGWWTRFGAKADGSLCVMKWECGLPGP
KNTNWEGGEYRITMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILN
EDSGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYELFVHNRQEYDRRV
RLEAKKNPPAA*
back to top

mRNA from alignment at P-fluviatile_contig13:667259..673542-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1679.1 ID=mRNA_P-fluviatile_contig13.1679.1|Name=mRNA_P-fluviatile_contig13.1679.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6284bp|location=Sequence derived from alignment at P-fluviatile_contig13:667259..673542- (Porterinema fluviatile SAG_2381)
CAGCAAGGACGTGCAAGGAATTGAGAGAAGAGGAATCAGTGTCACTCCGC
GACTGACAAGCAACAACTCTGAGAGTGAGAAAAGGAGCTCCCGATTCCTC
AGTCTCTTTTGACCCTTAGACCACTAGTACTGAAGCTTTCTCCTCCAAAT
TTGAACAGAAACCCAACGTCCGTCTTGCAGAAACATAAGAGCGATGAGCG
GAATTGCGGTTGAAAGGCTCAAGCAGGAGAGGAAAAATTGGAAGAAAGAT
CCCGACAGGCCCTTTGTGAGTGGAGATTGTGACAGCAGATGCCTTGAGTT
GAGGTGCTTCTTTTGTGTGTGCGCCGGTGCAATATCCAAACTTGCAGGTT
CTAACCCCTGTCGCTATGGTTGGAGTTGTTGAAGGGCTCATGGCACCAAC
CACCCCGGTCTCGTCTTCCGTGTCTCTTTCCTTACCTTCTTCCTTCCCAT
TTCTATTGGTGAACACGTTCATCTAAGCATGTGGTGTCAAGCTGGCCCTG
CAAACCCAGAAGACAGCCTCTGGCGGGTTCCGCGCTGAAGCTCAGTTTTC
CAGATGAAGTCCTCTCTCAAAATCACATGAACAAACAAAAAATCGACTCT
ATTTAGGGAATCGTCCTGACGTGAATCGCCAGAAGTGATGTTTGAAAAAG
GTATGCCGATTTAGGGTAGGCAGAGATGGTTGGTCAGACTAAAACTAACG
TTAGGAAGTGCTCTGGAATGGGTAGGTCTCAGGCTGGGCCGGGGGGTGGA
ATCTTCCGAAGAGGAGATAGGGGGCGAGGGTTCGGTGTCGGGGTAGCGAC
AGTTGATGTTGAGAAGTCTGCCACAACGAGTTGTTCACCTCTTCGGCGAA
CTGTTTTTGCTCAGCCTGTCGAGTGCGTGACTCGACCAGTGTTTCGTCTT
CGCCAAGTACCCGGCTCTTGTCCCGAAGCTTGAATCGCACATAGTCGAGA
GGAAGGTCATCATGGATACCGGGGTTGATCATCTGGGGGTGGATGGCGAA
ATCGACGGTCGAAAGACAGAGGGAACTCGAGTCCTGCGGTAAGGGCGCCT
GTTTGATGCAGCGGGTAACCGGTCCACAGTGTGGGGATACCTTCTGCGGC
AGCTCTTGAAAAGAGGTGCAGAGAACAGGGTGTCGTGTGGGCAACGCGTG
TTTCGATTTGTCGGGAGATTTGTGTAAATATATGCCTTCAGGCCCTTGTA
GAACGTTGTATCTTGGACGTTTTTCTCTTGCAGCGGCGGTAAAATGACGA
CGACGCATGTATCGCTAGGACTATCCACCAAATAAAAAAAGTACAAGTCC
GACACTGGGTTCATGATCCCCGCCCCAGTTTTACCGTTGCGTGAGAAATT
CTACTTCATCCGAGCCATTTTCAAGCCCGAGGGGGTTTTGGTGCCACCCG
TGCTTTCTGCTTTATGATTCTTAGCCACCGGAACTTGGTAGTTTTTGATG
AAACGCGGGCGAGATGAACGAATATTTGTCTCAAACTATTGACATGGTCA
CTTCATCACAGGACCATGCAAAATATATCCGAGGTTTAGGATGAAGATGG
GAAGAATCCACGAGCCCCCCCTCCCCAATATTAAGCTTTATCCCGCCCTC
TGTAAACAACCTCTGCTGTTTGCTCCCAAATCCTATGGAGTGTATGCACA
CACGCCGACACTCACGAAGGCTCGTTGTAGCTGACTGAGGGATTACGAAG
AATCGGAAGTTTTATGTTCGCCAGAGGCGTCGTTGCCTAAGTGTTGTGGT
GCTCAACGACTGCGACCACGTCCAGTGACTGCGCGTGCCCCCTTTTAATT
TGATTGGCGTGCCGACTTCAGTAGACATGTTGCGAAGACGGGATAATTTT
GAAAATTCGAAACCCCCCCCTCCCCTCTGGATGCACCAATCTTGGAGGGG
GTTCGGCATGCGAGAAAACTTTTGACTTCAACACATCGTCGCGTGCCAGT
TGCTGCAGCATAAACTCGGCCACTTCGCTTGAGCTTGCTTCGTAGGGTGC
CCGCATTCAAACTGCCGTGACTGCGATACGCCTCTCGTAATAGCAGCTCG
GATGTTCGGCAATCAGACATCGGGTTCTATAATCGTGTTATCGTGCCTGT
GTTTTCTCCCCCCACTCTCTCCACTTTCTTCATCTCCGTCACCCTTATTT
CTCCGTTCTCGAACCCTTTATCTTGATCCCTCCCCCCTCTCACTCCCGCG
CCCTCCCCGATCGATTGTTTCCTCGGCAGGGCTGGTGGACCCGATTTGGT
GCGAAGGCGGACGGCTCCCTATGCGTCATGAAATGGGAGTGCGGTCTCCC
TGGGCCGGTGAGACAAGTTTCCAAATGGTCATGTTCTCAGTCAAGTCACG
GCCCGTTAGGATAGGCAGAGGTCCAAAAGAAACAGGACATGGCAAGGGTG
GGCGCTCATTATTTAAGAGAAACGTACGCGTGCGTGCAGTTAAAACGTCA
TGAGCGATTACGACAAGAACTCTTGACGACGGTCCGGAATCCTATCACAC
GTCGATCTTGTTGTGTGGGCCGAGATAGTTGTGGAAAGAGTGTGCCCTTC
CTGGGCCGCACAACAGGCAAAGGGTCTGCCTAAATGTGACCATGCCAGCA
GGCAGCATGGACGGCGTGTCTGTTGCTGCAGCGAAAGTCTGCGCTGATTC
GACGGTAGTTTTGATGCAGCGGGGCGAACAAGTGGGGCGGACGAATTCCG
TCCACAGTCTTGATTCTCCCTCCTGGATGCACTCGAATGACAACGCTCAA
TCCTTCTGGGGACGCACAAGCAATTTGCAGTCGTCTGCATAGCCTCCCCA
AGCCGTAGCCGTTCCACATTGCCGTAAGGGCTCAAAGCTTTCCAACGTGC
TGCTTTGTTCGGTAAATTGTGGTTCGGCGCGTATTTTTCAGCCTTGTACG
GCTTCCACATTGTGCAAATCGGCGTGCTCCTATTGCCATCGCGTGGATTG
CGTTAGCTTCATTATATCACCCAACTTCGCCGTTGCTGACGTCCGCCTAC
GAGGGTCGCGATGAGCACAAACTCTTGGTCGAGCTCCTGCAGATACCATG
ACACAGAGCTTGACTCTCTACCCGAATTCCCTTTGCACTTGCTACTGCTA
CTTCTTCCTCGGCATTATGGCATGACACACTCTCGTCTCCCAGAAGAATA
CGAACTGGGAAGGAGGAGAGTACCGGATCACCATGGAGTTTACCGAAGAC
TACCCGTCGAAGGTGTGCACGCGCGCCATGCTGTGACTCGGGCACGATTC
GCAGGAGCAGGCGTACGTACGCGGTGTGCTACACGCGCACGGTTTCAGTG
CCTGGCTGTGTTGTGTGTGCTCAATGCTTTGAGTCCGACTTCACACCAGC
AGCCGACGCCGCCCGAGTCTCTTGGCCTCAGTGCGGCGTTGTTCCGCGGT
CGAACGTATGATCGTGTGCACTCCCGCCACTGTCTCGCCCGATTCATGCG
CGATGGCAACGCGAGGGCCAACCCTGAAAAAGCTATGAAGGTGAAATCTA
CCGGAAGCAAGCCTTGAGGGCGTCGCCTCTTAATTTCTTGCAGCATCATC
CGCACAGTGTCATCGAACGATGATCGCGCCAAGAAAATGCTTGACGAATC
CTCCACCCTCGTTGCTCTCTTGTGTGTGCACCGCTGCCCTTTCAATTGGA
CCTTGCGCTTCCCCAGCCACCCAAGTGCAAGTTTGTGCCTCCCCTGTTCC
ACCCGAACGTGTACCCGAGTGGAACCATCTGCCTCAGGTAAGGCATGAAC
AAAGTAAGTGAGGAAACGGGTCCCTTGTGTTTTTTTTCGCAGTGCAAGGA
GTCAGATGCGTGGCAGCACGCAAACGGATCCGCAAGCTGTTGAAGGGGGA
CGGACAGGCGTTTTGTCGCATTACCGCAGGAAGCACTATTTTTTTTCTCG
GCAGTGTCCACCATCAGCGCAACCCGCACGCACGTACCCCGCCAGCCTCG
TGTCTTTTTCGCATGTTGACTTGAAATCGCCGTTTATTTCGTAGCCACCT
TTCCCAGCGTATTTTGCAGCCATCATCTGTAACCCTGTTTGTTTCCTCTG
TTGTTGGGGCAGTATCCTCAACGAGGACAGCGGATGGAGGCCCAGCATCA
CCATCAAGCAGATGCTCCACGGGATATTTGAACTGTTGGACAATCCGAAT
GTGAGTTGAGCAAAGCAATGTGCATACCGTGAGTGAAATGCATGCTGTGC
CGTTAAAATCAACCAGGCAGCCCCCAGCCTCACATTAGTTTCTGACCCAA
TTTGTTGTAGTTTGACGAGAAGTGGAACGAGCGATAGAGCAGGAGATGCG
GTCGAGGCGTTCGAATCACTGTTGTAAACATATCGGCGCATTTGAGGTGC
GGATTGAATAGCAGGGAGAGTTGCTGTCAGTGGATCACACAGCAAATTAA
AAGACAGCAAGAATAGAGAGCAAGAACAATGTCGAATTCCTGAAAAAGGT
GCGGATTGTGTACCTTACAACAAATCAGACAAACAATTCCCGAGCACTGC
AAACATCCTGGGCAAGATAGGGGAAGTATGGATCAGCTCTGTGAACCACC
TGTGTGCCTCCTGGTGTATCACCAAGAGACACAAACAGGCTGCTTAGTGT
AGAAATTCCGAAATTTCTCGCATCGGACAGCTCAATACCGGGTCAAGTCT
TGGCTAGGTAGCCTGCTAGTGTGGGCATAGAGTACGCACAGCTCGCGGAG
CCTTGATGCAGGACCGTTGCATGCCATTCACACAAAGAGGTCTCCCAGGT
GTAGATGTGGGTCACAGCTCTACGAACCCAACCAACCTACTTGTGTTTGA
CCACATATCATACGAAGTACAACCGATGGGGACGTTCCGTACGTTCTCCT
CAGACAATCGTCTCTCGGAGTGATGTAGCTGTCGCAAGTACTCCGAGCCA
CGAGTATTTGCGTGCAACGCCTCGATGCACCATAAGGTGTCTTCCATGAC
GCTTCTTGGATCGTTGCCGTTTGCTTTCATCCGAGAGGGATGCGAGAAGA
CCCCCTCGCACACCTCTCACTCTCTCCTTTTCGTCCCCATCTCATACTGA
GATCCTGCCTCCCCTGTTTTAAGCATTCACATCCGTCCGGTGATCGTCAA
TCCCGCCCACTTCTGCGGCCGTTGCCTATGTGGAACTTGCACACAACCCT
CGGAAAATCACACATCCCTGCGGTGTTCTCGGGAACTACTCCTTGTAACT
GCCCTCGCACACCTTTGGAGTTGCAAATATTGATGTCGGAGGGCCCTTGC
GAGTGAGTGCTGTGCCTGCGTGCCGTTTTACGCATGGCTTGCATGCGCAG
GATGCCAATCTTCTGACACCCCCCTGCGTCGTGCGTCTTGCCTGTCGAAA
ACGGCTGACGTTCGTGCAGCCGGACGATCCGGCGCAATCGGAGGCGTACG
AGCTGTTCGTGTGAGTGTTTTTATGTTTGGTGTGTCTGCTCGTTCGTGGA
TAGATTTAAGAAGGGTTGAGTGGCAACCACGGCACATCAGAAGTGAATCA
TGCCCGTACGCGTGTGAGCATGAATGTCACGAGAAGAGTACAAACGCCAC
ACGGCCACACGCAGTCTCCACCGAGGTTTCGTTTCCATTACTGTAGGTGT
CATTGTTCAAGCTTCCATTTGTAGCAGAAACATTTTCAGGCGCATTTCCT
TCACTCTCGCGTTGTGCTTCGAAGTTTTGGCTGCACGGGTCCGGTCCGAC
ACGCTTACGGAAATGCCGCGCGAAACGGTCTTGTGGGTCTGTCGTGTGCA
TTGCAAGTCGGTGCGGGTATGTTTGTGCGCTGAAACGCGATGGCGCGCCA
GGCTATTACACCTCACATTGAATCGACGGGCGTTTGACGTTTTCCTTCAC
CGTATTTGAACTCCATCACCTACAGGCACAACCGGCAAGAGTACGACAGG
AGGGTGCGCCTCGAGGCCAAGAAAAACCCTCCCGCCGCATAGCATCGCAG
CGGACGAGGTCGCACGTGTTGGTGCATTTGACACCACGGGACCGACCCTC
ACACACTCCGGGCTACGGCTCACCGTGCACACGATCAATGTGCATCCACG
CCGAAGGAAGGATACGTGGCACTCGCGTCAGAAACGACCATGCGGATACC
CTGTCGCATCAAGTCTGTAGCCCCCGCTGGCGACTGGGAGTGGTAAAGTG
GCTTGTAAGAGCGAGAGTCTGCACGATCGGCCATCACGCAGCTGAAGTTG
GCACAGCTCTGCCCAGCGGGGTGGGGTTGTGCCACGCTGTCTTTCTTTTT
TTTTTTCAGGGGTAGCGTTGCCCCTCCATGAAGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:667259..673542-

>mRNA_P-fluviatile_contig13.1679.1 ID=mRNA_P-fluviatile_contig13.1679.1|Name=mRNA_P-fluviatile_contig13.1679.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=972bp|location=Sequence derived from alignment at P-fluviatile_contig13:667259..673542- (Porterinema fluviatile SAG_2381)
ATGAGCGGAATTGCGGTTGAAAGGCTCAAGCAGGAGAGGAAAAATTGGAA
GAAAGATCCCGACAGGCCCTTTATGAGCGGAATTGCGGTTGAAAGGCTCA
AGCAGGAGAGGAAAAATTGGAAGAAAGATCCCGACAGGCCCTTTGGCTGG
TGGACCCGATTTGGTGCGAAGGCGGACGGCTCCCTATGCGTCATGAAATG
GGAGTGCGGTCTCCCTGGGCCGGGCTGGTGGACCCGATTTGGTGCGAAGG
CGGACGGCTCCCTATGCGTCATGAAATGGGAGTGCGGTCTCCCTGGGCCG
AAGAATACGAACTGGGAAGGAGGAGAGTACCGGATCACCATGGAGTTTAC
CGAAGACTACCCGTCGAAGAAGAATACGAACTGGGAAGGAGGAGAGTACC
GGATCACCATGGAGTTTACCGAAGACTACCCGTCGAAGCCACCCAAGTGC
AAGTTTGTGCCTCCCCTGTTCCACCCGAACGTGTACCCGAGTGGAACCAT
CTGCCTCAGCCACCCAAGTGCAAGTTTGTGCCTCCCCTGTTCCACCCGAA
CGTGTACCCGAGTGGAACCATCTGCCTCAGTATCCTCAACGAGGACAGCG
GATGGAGGCCCAGCATCACCATCAAGCAGATGCTCCACGGGATATTTGAA
CTGTTGGACAATCCGAATTATCCTCAACGAGGACAGCGGATGGAGGCCCA
GCATCACCATCAAGCAGATGCTCCACGGGATATTTGAACTGTTGGACAAT
CCGAATCCGGACGATCCGGCGCAATCGGAGGCGTACGAGCTGTTCGTCCG
GACGATCCGGCGCAATCGGAGGCGTACGAGCTGTTCGTGCACAACCGGCA
AGAGTACGACAGGAGGGTGCGCCTCGAGGCCAAGAAAAACCCTCCCGCCG
CATAGGCACAACCGGCAAGAGTACGACAGGAGGGTGCGCCTCGAGGCCAA
GAAAAACCCTCCCGCCGCATAG
back to top