mRNA_P-fluviatile_contig13.1677.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1677.1
Unique NamemRNA_P-fluviatile_contig13.1677.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1677.1 vs. uniprot
Match: A0A6H5L991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L991_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.120e-11
Identity = 71/205 (34.63%), Postives = 85/205 (41.46%), Query Frame = 2 
Query:  596 QPFQGHMGGPWPGQYMSQLPGSLVLA--------PQHLGLTM--------------------GAGPLHGPAAPAAPLMVGCPTPHPQHLSSGTVVPFCIGAADAEAAEAXXXXPAVVDVPPSSTFGGSISFAGGDDSGEISATTEISATSKRDEWALALGEALASVEQLGSYVSQGKYGVVLSLGEDPGRVFEPAVVDFGDVATI 1126
            QPFQG M GP    YM+QLPG   +          QH   T+                    GA P  G   P      G P   P   S G   P  +G++                               GDDSG +S        SK D W ++LG ALAS  ++  YV++GKYGVVLSLGEDP    EP VVDFGDVAT+
Sbjct:  215 QPFQGQMVGPSQDLYMAQLPGGAQMGRDQGPAANEQHTKWTLKLHRRRIAVLKKRRRAEVATGAQPAAGAPRPGETDGAGSPNCSP--ASPGGFRPLPLGSSV------------------------------GDDSGHVS--------SKLDRWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDP----EPPVVDFGDVATV 375
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BLAST of mRNA_P-fluviatile_contig13.1677.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-10
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 2 
Query:  911 GDDSGEISATTEISATSKRDEWALALGEALASVEQLGSYVSQGKYGVVLSLGEDPGRVFEPAVVDFGDVATIA-SAALGGGGDGGGQH 1171
            GDD G +S        SK D+W ++LG ALAS  ++  YV++GKYGVVLSLGEDP    EP VVDFGDVAT+  S   GG G G GQ 
Sbjct:   87 GDDLGHVS--------SKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDP----EPPVVDFGDVATVVPSPREGGRGGGRGQQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L991_9PHAE4.120e-1134.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FRN2_ECTSI1.560e-1054.55RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:657617..659289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog2880.D7FRN2
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756,ko:K13983,ko:K18422
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
EggNOG free text desc.helicase activity
EggNOG OGsCOG1112@1,KOG1804@2759
EC3.6.4.13,4.3.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size1178
Cds size1170
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.27661-CDS-P-fluviatile_contig13:657616..6577781622815535.27661-CDS-P-fluviatile_contig13:657616..657778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 657617..657778 -
1693562169.2242496-CDS-P-fluviatile_contig13:657616..6577781693562169.2242496-CDS-P-fluviatile_contig13:657616..657778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 657617..657778 -
1622815535.2869515-CDS-P-fluviatile_contig13:658274..6592821622815535.2869515-CDS-P-fluviatile_contig13:658274..659282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 658275..659282 -
1693562169.5454955-CDS-P-fluviatile_contig13:658274..6592821693562169.5454955-CDS-P-fluviatile_contig13:658274..659282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 658275..659282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.2978792-UTR-P-fluviatile_contig13:659282..6592891622815535.2978792-UTR-P-fluviatile_contig13:659282..659289Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 659283..659289 -
1693562169.5673778-UTR-P-fluviatile_contig13:659282..6592891693562169.5673778-UTR-P-fluviatile_contig13:659282..659289Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 659283..659289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1677.1prot_P-fluviatile_contig13.1677.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 657617..659282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1677.1

>prot_P-fluviatile_contig13.1677.1 ID=prot_P-fluviatile_contig13.1677.1|Name=mRNA_P-fluviatile_contig13.1677.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=390bp
MAKPKASQGMSYLRRQPQAQQQQQQQQQQQQKPFQHMMQMQPQMLNPSSG
DAPQQMQSFPTTSQQRPRQPQQQQQQQQQQQILQFAGGMTPQAQPSPQPP
QCPTQPLSSFAGGPPQQQQLFPQPHPQQQMQSQTQPAAFNQFLGGGASQQ
AGMSQKLLPSHQQLQFQLQQQRQQQQQHEQLLIQHQQQHQHPHQHQQPFQ
GHMGGPWPGQYMSQLPGSLVLAPQHLGLTMGAGPLHGPAAPAAPLMVGCP
TPHPQHLSSGTVVPFCIGAADAEAAEAAEAAPAVVDVPPSSTFGGSISFA
GGDDSGEISATTEISATSKRDEWALALGEALASVEQLGSYVSQGKYGVVL
SLGEDPGRVFEPAVVDFGDVATIASAALGGGGDGGGQHGR
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mRNA from alignment at P-fluviatile_contig13:657617..659289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1677.1 ID=mRNA_P-fluviatile_contig13.1677.1|Name=mRNA_P-fluviatile_contig13.1677.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1673bp|location=Sequence derived from alignment at P-fluviatile_contig13:657617..659289- (Porterinema fluviatile SAG_2381)
CACCCCGATGGCGAAGCCAAAGGCATCGCAAGGGATGTCGTACCTGCGTC
GGCAACCACAAGCGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAA
AAACCATTCCAGCATATGATGCAAATGCAGCCTCAGATGTTGAACCCCAG
CTCCGGAGACGCGCCCCAGCAGATGCAATCATTCCCGACAACTTCGCAAC
AACGACCACGACAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
ATCCTTCAGTTTGCAGGGGGCATGACCCCGCAAGCGCAGCCTTCCCCGCA
ACCGCCACAATGTCCTACGCAGCCGTTGAGCTCGTTCGCCGGGGGTCCAC
CCCAGCAACAGCAGCTGTTTCCCCAGCCACACCCGCAGCAGCAAATGCAG
TCGCAGACACAGCCTGCGGCCTTCAATCAGTTTCTCGGCGGGGGTGCGTC
CCAGCAAGCCGGTATGTCTCAGAAACTCCTGCCTAGCCATCAACAACTGC
AATTTCAACTGCAACAACAGCGCCAGCAGCAGCAGCAGCACGAGCAACTG
CTAATACAGCATCAACAACAGCATCAGCACCCGCACCAGCACCAGCAGCC
TTTTCAGGGGCACATGGGAGGGCCTTGGCCCGGACAGTACATGTCGCAGC
TGCCAGGATCGCTGGTGCTAGCGCCGCAGCACCTCGGTCTGACCATGGGG
GCGGGACCGCTCCACGGCCCTGCTGCTCCGGCGGCACCCTTGATGGTAGG
GTGCCCCACACCACACCCTCAGCACCTGTCGAGTGGGACGGTCGTGCCTT
TTTGTATCGGTGCCGCGGACGCGGAGGCGGCGGAGGCAGCGGAGGCGGCG
CCGGCGGTCGTTGATGTGCCACCCTCCTCGACCTTCGGTGGCTCGATCAG
CTTCGCAGGGGGCGACGATTCGGGAGAGATCTCCGCAACGACAGAGATTT
CCGCAACCAGCAAGCGAGACGAATGGGCGCTCGCGCTGGGCGAGGCACTC
GCATCCGTCGAGCAGGTAAAAGGCTATCCATCCCATGGGGACTTGGCCGC
CGGGTTGGCTGTCCGTCTTTTTATCGCCGTTCTTATTTCGGCGGCGGGGC
GATTCCATTTTCGAACAAAAATGCATGCACTGCTTAAGCTCTGCTTGAGC
TCTGCTTTCTGCACAGCGTGGTATCGGTGCGCAATCGGCGTGTGCAAACG
CATCGGAATGGATGCACAGATGTTGCCGTCACCTTGACATGTTGCGCTCG
GGACGGCCGAAGTGGCAATCGACCCTGATGGGGCTTTGAGAATCGGAGAT
GAACGTGTCGGGTGACCGTAGCGGGTCCGTTCGCAGGCTTGTTTTTCTCC
TTCGAAATCAAACGCACGAACATGCACACCCTCCCCCTGCGACTTGTAGG
CCTGACAGCCTTCCGTGTGCCGTGCACTTGTTTTTCCTGCGCTCGATTGA
TCTATCCATCCATCCATCCATCCATCCATCCATCCACGGGCGGTGGCGGC
GGCGCCGACAGCTTGGGAGCTATGTCTCCCAAGGCAAGTACGGCGTGGTG
CTGAGTCTCGGAGAGGACCCAGGGAGAGTCTTTGAACCGGCCGTGGTCGA
CTTCGGCGACGTTGCGACGATTGCGTCGGCCGCGCTTGGGGGCGGTGGCG
ATGGGGGCGGGCAGCACGGCAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:657617..659289-

>mRNA_P-fluviatile_contig13.1677.1 ID=mRNA_P-fluviatile_contig13.1677.1|Name=mRNA_P-fluviatile_contig13.1677.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2340bp|location=Sequence derived from alignment at P-fluviatile_contig13:657617..659289- (Porterinema fluviatile SAG_2381)
ATGGCGAAGCCAAAGGCATCGCAAGGGATGTCGTACCTGCGTCGGCAACC
ACAAGCGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAAAACCAT
TCCAGCATATGATGCAAATGCAGCCTCAGATGTTGAACCCCAGCTCCGGA
GACGCGCCCCAGCAGATGCAATCATTCCCGACAACTTCGCAACAACGACC
ACGACAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATCCTTC
AGTTTGCAGGGGGCATGACCCCGCAAGCGCAGCCTTCCCCGCAACCGCCA
CAATGTCCTACGCAGCCGTTGAGCTCGTTCGCCGGGGGTCCACCCCAGCA
ACAGCAGCTGTTTCCCCAGCCACACCCGCAGCAGCAAATGCAGTCGCAGA
CACAGCCTGCGGCCTTCAATCAGTTTCTCGGCGGGGGTGCGTCCCAGCAA
GCCGGTATGTCTCAGAAACTCCTGCCTAGCCATCAACAACTGCAATTTCA
ACTGCAACAACAGCGCCAGCAGCAGCAGCAGCACGAGCAACTGCTAATAC
AGCATCAACAACAGCATCAGCACCCGCACCAGCACCAGCAGCCTTTTCAG
GGGCACATGGGAGGGCCTTGGCCCGGACAGTACATGTCGCAGCTGCCAGG
ATCGCTGGTGCTAGCGCCGCAGCACCTCGGTCTGACCATGGGGGCGGGAC
CGCTCCACGGCCCTGCTGCTCCGGCGGCACCCTTGATGGTAGGGTGCCCC
ACACCACACCCTCAGCACCTGTCGAGTGGGACGGTCGTGCCTTTTTGTAT
CGGTGCCGCGGACGCGGAGGCGGCGGAGGCAGCGGAGGCGGCGCCGGCGG
TCGTTGATGTGCCACCCTCCTCGACCTTCGGTGGCTCGATCAGCTTCGCA
GGGGGCGACGATTCGGGAGAGATCTCCGCAACGACAGAGATTTCCGCAAC
CAGCAAGCGAGACGAATGGGCGCTCGCGCTGGGCGAGGCACTCGCATCCG
TCGAGCAGATGGCGAAGCCAAAGGCATCGCAAGGGATGTCGTACCTGCGT
CGGCAACCACAAGCGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACA
AAAACCATTCCAGCATATGATGCAAATGCAGCCTCAGATGTTGAACCCCA
GCTCCGGAGACGCGCCCCAGCAGATGCAATCATTCCCGACAACTTCGCAA
CAACGACCACGACAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GATCCTTCAGTTTGCAGGGGGCATGACCCCGCAAGCGCAGCCTTCCCCGC
AACCGCCACAATGTCCTACGCAGCCGTTGAGCTCGTTCGCCGGGGGTCCA
CCCCAGCAACAGCAGCTGTTTCCCCAGCCACACCCGCAGCAGCAAATGCA
GTCGCAGACACAGCCTGCGGCCTTCAATCAGTTTCTCGGCGGGGGTGCGT
CCCAGCAAGCCGGTATGTCTCAGAAACTCCTGCCTAGCCATCAACAACTG
CAATTTCAACTGCAACAACAGCGCCAGCAGCAGCAGCAGCACGAGCAACT
GCTAATACAGCATCAACAACAGCATCAGCACCCGCACCAGCACCAGCAGC
CTTTTCAGGGGCACATGGGAGGGCCTTGGCCCGGACAGTACATGTCGCAG
CTGCCAGGATCGCTGGTGCTAGCGCCGCAGCACCTCGGTCTGACCATGGG
GGCGGGACCGCTCCACGGCCCTGCTGCTCCGGCGGCACCCTTGATGGTAG
GGTGCCCCACACCACACCCTCAGCACCTGTCGAGTGGGACGGTCGTGCCT
TTTTGTATCGGTGCCGCGGACGCGGAGGCGGCGGAGGCAGCGGAGGCGGC
GCCGGCGGTCGTTGATGTGCCACCCTCCTCGACCTTCGGTGGCTCGATCA
GCTTCGCAGGGGGCGACGATTCGGGAGAGATCTCCGCAACGACAGAGATT
TCCGCAACCAGCAAGCGAGACGAATGGGCGCTCGCGCTGGGCGAGGCACT
CGCATCCGTCGAGCAGCTTGGGAGCTATGTCTCCCAAGGCAAGTACGGCG
TGGTGCTGAGTCTCGGAGAGGACCCAGGGAGAGTCTTTGAACCGGCCGTG
GTCGACTTCGGCGACGTTGCGACGATTGCGTCGGCCGCGCTTGGGGGCGG
TGGCGATGGGGGCGGGCAGCACGGCAGGCTTGGGAGCTATGTCTCCCAAG
GCAAGTACGGCGTGGTGCTGAGTCTCGGAGAGGACCCAGGGAGAGTCTTT
GAACCGGCCGTGGTCGACTTCGGCGACGTTGCGACGATTGCGTCGGCCGC
GCTTGGGGGCGGTGGCGATGGGGGCGGGCAGCACGGCAGG
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