mRNA_P-fluviatile_contig13.1662.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1662.1
Unique NamemRNA_P-fluviatile_contig13.1662.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: A0A6H5JET5_9PHAE (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.450e-28
Identity = 77/135 (57.04%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:    2 ASSIATRGGDAGVVYSPLLEGWQGLKDVCNGSDTVYLLSALDLPPLPNDADLQAFSTGVGKVVDCCLEGGVEALVFTSSSSVVRSERRGRGKGRGIGRRGDDMYNAEERLTSYVTREEDTKAHVVAQAEARVLEA 406
            A  IAT    A V  SPLLE W+GLK+VC G+DTVYLLSALDLPP PND+DLQAF+ GV +VVDCCLE GVE LVFTSSSSV  S  + +G               EE        E+D KA  VA+AEARVL+A
Sbjct:   29 AGRIATAAIPAEVRSSPLLENWEGLKEVCTGADTVYLLSALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEKAQGP-----------TEHEE--------EDDVKARTVARAEARVLDA 144
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D7FV37_ECTSI (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV37_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.090e-20
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = 2 
Query:   74 LKDVCNGSDTVYLLSALDLPPLPNDADLQAFSTGVGKVVDCCLEGGVEALVFTSSSSVVRSERRGRGKGRGIGRRGDDMYNAEERLTSYVTREEDTKAHVVAQAEARVLEA 406
            +  VC G+DTVYLLSALDLPP PND+DLQAF+ GV +V++CCLE GVE LVFTSSSSV  S  + +G     G                   E+D KA  VA+AEARVL+A
Sbjct:   18 ISQVCTGADTVYLLSALDLPPSPNDSDLQAFTAGVSRVIECCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEG-------------------EDDMKARAVARAEARVLDA 109
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-13
Identity = 67/183 (36.61%), Postives = 96/183 (52.46%), Query Frame = 3 
Query: 1584 GMDAVNNR--GCTTLSLASSHGLPGMIDGLVKAGASLRSRDMVRLTSPQ*TLCFSSHTSVSPLLNHGAEVNSKDNIEDKQLRYAAMNAERRGIALVVDYQLKTGSNDKMINGAGRTPA-ITGDDVEMDNQDV--EDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQ-LRQESDVSRTIG 2114
            G+D VN R  G T+L +A+ +     ID LV+AGA +   D    T          H +   L  HGA + ++D   +  L  AA  A R+G+  +VD  L+ G+++  +N  GRT A + G  +E     +  +D++R R  L NAP  RAWR RGLLVLCRA   + + LR  S  +R IG
Sbjct:  179 GVD-VNRRTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSSARGIG 360
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.870e-12
Identity = 57/155 (36.77%), Postives = 84/155 (54.19%), Query Frame = 3 
Query: 1827 AAMNAERRGIALVVDYQLKTGSNDKMINGAGRTPAI-TGDDVEMDNQDV-EDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQESDVSRTIGMSNTLRLCTLARRKEARGEEAGKETQRMGSSDDWAAVAARALGSQEEGMFRAVAGCL 2285
            AA  A R+G A +VD  L+ G+++   +  G+ PA   G  +E+ +  +  ++    + LANAP  RAWR RGLLVLCRA   R +LRQE       G+S   R      R +A G    + T   G+ D+W + + R +  +EEG+FR+V G L
Sbjct:  268 AASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.330e-11
Identity = 61/187 (32.62%), Postives = 95/187 (50.80%), Query Frame = 3 
Query: 1752 SVSPLLNHGAEVNSKDNIEDKQLRYAAMNAERRGIALVVDYQLKTGSNDKMINGAGRTPA-ITG---------DDVEMDNQDVEDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQESDVSRTIGMSN-TLRLCTLARRKEARGEEAGKETQRMGSSDDWAAVAARALGSQEEGMFRAVAG 2279
            ++  LL  GA+++  D I+D  L  A   +   G+ L+    L+ G+++++ N  G  PA I G         +++E+DNQ      R R+ LA AP  R+WR RGLLVL R+ PTR+Q+   S    +IG S       + A RK + G+   +ET       DW  +  R +  + +G+FR V G
Sbjct:  203 TIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELL----LRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQ------RIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDN--EETGDQMVMVDWRYLVCRLIELEVDGLFRLVVG 377
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.510e-9
Identity = 42/96 (43.75%), Postives = 52/96 (54.17%), Query Frame = 3 
Query: 1998 LANAPTYRAWRGRGLLVLCRAHPTRLQLRQESDVSRTIGMSNTLRLCTLARRKEARGEEAGKETQRMGSSDDWAAVAARALGSQEEGMFRAVAGCL 2285
            LANAP  RAWR RGLLVLCRA   R +LRQE       G+S   R      R +A G      T   G+ D+W + + R +   EEG+FR+V G L
Sbjct:   58 LANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSGTPEGGTGDEWRSASRRVV-ELEEGIFRSVVGFL 152
[Close]
BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.950e-9
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 3 
Query: 1842 ERRGIALVVDYQLKTGSNDKMINGAGRTPAITGDDVEMDNQDVEDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQL 2081
            +R G A VVD  L+ G+++ +++  G T A +         D ED +RAR  LA AP  RAWR RGLLVLCRAHP RLQL
Sbjct:  285 QRHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364
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BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.280e-7
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 3 
Query: 1851 GIALVVDYQLKTGSNDKMINGAGRTPA-ITGDDVEMDNQDVEDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQE-SDVSRTIGMSNTLRLCTLARRKEARGEEAGKETQRMGSSDDWAAVAARALGSQEEGMFRAVAGCL 2285
            G   VVD  L+  +++   +  G TP  I G      +    +++R  K L  AP  RAWR RG+LVLCRAHP RL LRQ  S V  +  +  T     L  R++  G           ++ +W+ +  R LG  +EG+FR + G L
Sbjct:  254 GAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGL-DEGIFRTIVGYL 399
[Close]
BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.380e-5
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 3 
Query: 1917 GRTPAITGDDVE-MDNQDVEDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQE----------SDVSRTIGMSNTLRLCTLARRKEARGEEAGK-ETQRMGSSDDWAAVAARALGSQEEGMFRAVAGCLW 2288
            G TPAI   D E MDN   E  +  RK    AP+ +AWR RG LVLCRA P R++L+ +          S  +R++G        +  R  EA G   G    +++G +   +A+ A+ +G  E+G+FR +   +W
Sbjct:  777 GITPAIVWRDNESMDNLSWEKWQSVRKMFEWAPSDKAWRRRGWLVLCRAFPHRVRLKADNVGACPGAGRSVRARSVGAGAGSHSSSEPRVGEAGGGSVGPLPCEKVGVAGGLSALVAKVVGLHEDGVFRTIMEFVW 912
[Close]
BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.220e-5
Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = 3 
Query: 1764 LLNHGAEVNSKDNIEDKQLRYAAMNAERRGIALVVDYQLKTGSNDKMINGAGRTPA--ITGDDVEMDNQDVEDIKRARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQESDVSRTIGMSNTLRLC 2138
            LL HGA++N+        L  A  +A   G   VVD  L+  +++   +  GRTP   +     E D   V +++R  K L  AP  RAWR RG+LVLCR HP RL         RT  M   +R C
Sbjct:  437 LLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFV-NVQRVWKPLQYAPQDRAWRHRGMLVLCRVHPERLVY------GRTPAMCKRVRCC 556
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JET5_9PHAE2.450e-2857.043Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
D7FV37_ECTSI2.090e-2053.153Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNU3_9PHAE1.550e-1336.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI5.870e-1236.77Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LTL5_ECTSI1.330e-1132.62MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNN1_9PHAE5.510e-943.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI5.950e-950.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G981_ECTSI3.280e-734.01Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FHH2_ECTSI1.380e-533.82Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JBC2_9PHAE7.220e-536.22Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:515073..519885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7FYD0
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size3767
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1662.1prot_P-fluviatile_contig13.1662.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 517630..518451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.4061391-UTR-P-fluviatile_contig13:515072..5151541622815543.4061391-UTR-P-fluviatile_contig13:515072..515154Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515073..515154 +
1693562205.2275233-UTR-P-fluviatile_contig13:515072..5151541693562205.2275233-UTR-P-fluviatile_contig13:515072..515154Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515073..515154 +
1622815543.4170668-UTR-P-fluviatile_contig13:515417..5155081622815543.4170668-UTR-P-fluviatile_contig13:515417..515508Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515418..515508 +
1693562207.9672523-UTR-P-fluviatile_contig13:515417..5155081693562207.9672523-UTR-P-fluviatile_contig13:515417..515508Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515418..515508 +
1622815543.4269652-UTR-P-fluviatile_contig13:515970..5176291622815543.4269652-UTR-P-fluviatile_contig13:515970..517629Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515971..517629 +
1693562207.9912243-UTR-P-fluviatile_contig13:515970..5176291693562207.9912243-UTR-P-fluviatile_contig13:515970..517629Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 515971..517629 +
1622815543.4567468-UTR-P-fluviatile_contig13:518451..5198851622815543.4567468-UTR-P-fluviatile_contig13:518451..519885Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 518452..519885 +
1693562208.027371-UTR-P-fluviatile_contig13:518451..5198851693562208.027371-UTR-P-fluviatile_contig13:518451..519885Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 518452..519885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.4364376-CDS-P-fluviatile_contig13:517629..5180901622815543.4364376-CDS-P-fluviatile_contig13:517629..518090Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 517630..518090 +
1693562208.00368-CDS-P-fluviatile_contig13:517629..5180901693562208.00368-CDS-P-fluviatile_contig13:517629..518090Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 517630..518090 +
1622815543.445892-CDS-P-fluviatile_contig13:518411..5184511622815543.445892-CDS-P-fluviatile_contig13:518411..518451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 518412..518451 +
1693562208.0138144-CDS-P-fluviatile_contig13:518411..5184511693562208.0138144-CDS-P-fluviatile_contig13:518411..518451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 518412..518451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1662.1

>prot_P-fluviatile_contig13.1662.1 ID=prot_P-fluviatile_contig13.1662.1|Name=mRNA_P-fluviatile_contig13.1662.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MNAERRGIALVVDYQLKTGSNDKMINGAGRTPAITGDDVEMDNQDVEDIK
RARKRLANAPTYRAWRGRGLLVLCRAHPTRLQLRQESDVSRTIGMSNTLR
LCTLARRKEARGEEAGKETQRMGSSDDWAAVAARALGSQEEGMFRAVAGC
LWPRRSHTPCGVWATD*
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mRNA from alignment at P-fluviatile_contig13:515073..519885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1662.1 ID=mRNA_P-fluviatile_contig13.1662.1|Name=mRNA_P-fluviatile_contig13.1662.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4813bp|location=Sequence derived from alignment at P-fluviatile_contig13:515073..519885+ (Porterinema fluviatile SAG_2381)
CGCCAGCAGTATCGCCACGCGAGGTGGTGACGCTGGGGTAGTGTATTCGC
CTCTGTTGGAGGGGTGGCAAGGATTGAAAGACGTGAGAAATGGGTCGGTA
ACGGTCATCATGACGGCGGGAAAGTGGGAACGTGTGCTCTGGAGGGGTTT
GATTTGCATACGATGTGGAACTCCTCATGTTTGTCATGAGCATGTAACGT
CATCCCTCACTGGTGTGCGTGGGCAAGATCTTCGTGCGTGTGCGAGCGCC
GTGTGCTTCGAACCGCACGCACACACCTGCCGCCATTGTTGGCATTCGTG
ATGTGTTTTGAAATTTTATCCAAGCGCACGGCGTCTCTGCCACAGGTCTG
CAACGGCTCGGACACCGTGTATCTTCTATCGGCGCTCGATCTTCCGCCCT
TGCCGAACGACGCCGACCTGCAAGCCTTCTCCACAGGTTTGGCGGAAGTA
GAACACAAGGTGTATCCACACATTAACACAATTTCCAAGGAGACAAGCAA
CTGCTAAGACTGATATCGTTCCAAATTTGATAGCAGTGACATCCTGCTCC
ATTATGCTGAACGCTCTATGAAACGCCCTGAACACAGTATTCTGGTACGC
TCCCGTGTTCAACCCAATCCTCGCCACTGCGGGCGCACATTCTCTCTGCA
CAAAATGGGCGCACAGGCAAATCGCTTGCCATTTTCCCTCCCTTCGTCCT
TCCCGGTGAAGTTTAAACGGTGTCTCAAGAGGCACCATCTTATCTGAAGA
CGGGATTAAAACAAACGACAATCATTCTCTTGCTTGTGCCCTCGCGCGCG
CACACCGATTCCCCGCCACGTCCCAACTAAAACGGCACGCACGGGCTCTC
TCTCGCTCTCGCTCTCTCTCTCTCGCTCTCTCTCCACGACTTCCCCAGGC
GTTGGGAAGGTTGTCGACTGCTGTCTCGAGGGTGGAGTGGAGGCCTTGGT
GTTCACCAGCTCGTCCAGCGTGGTTCGTTCGGAAAGGCGAGGCCGTGGGA
AAGGGCGAGGAATTGGGAGGAGGGGAGATGATATGTACAACGCAGAGGAA
AGGCTGACGTCATATGTGACACGCGAGGAAGACACGAAGGCGCACGTCGT
GGCTCAAGCCGAGGCCAGAGTTCTCGAGGCCAGGTAAGCTGCACGCCTCT
TGCGGTCGTATTATATAAAGTAGGGACAGTTTTGGCAGTCGATTTATTTT
TGATATGCGTACAATCGCTTCTCTTCCGCTCTCCGTGAGCATGTTTTCTT
CTCGAGTTCATCTCTATTCGTATTTTTTCGTTTTGGTTTCGCGGTGGATT
CTTTGTGGCCGATTTTTCGTTTTGGTTTCGCGGTGGATTCTTTGTGGCCG
TACCCCCTTTTTGCACGGCATGCCAGGGGAGCTATGCTGCGCCCACCGTT
CGCGATTCGGTCCCAACCTGCCTGCCCCGCCTGATCCCATGCAGGCTAGT
CTCCTCGCTTATCCAAAAGGATGTCTCTCCCTTGCCTGAGACATTCCAAC
GTACCGATCGATCGTCGCATTAGGCATCGACGTCGTTCTACGTCGCTGCC
TTGCTGCCTTCCTGCCTTCGTGCCTTCCTGCCCTGCACTTCCGTTTGTCT
TTCTTGCTTTCCACCTTCCTGCCTTCCTGCGTCTCTCGCTGCCTGTCTTG
TCCGCCCCGCCCTGCCCCACTGCTCATCTCTCTGGAAGCTATTCCGTCCG
TCTGCACGTCTCCGCGGGAGGCTTCGGCCCCGTGTTATAGAATAGAGGGG
GTTTCTAGTAAATCAGCAGGACGCGGATAACGGAGGAGCGACGAGAAGCT
CTTCGAGGGAACGAAAAGTTAGTGTTTGATTCTATAGTCTACTACGGCAC
ACCTGACCAGCTACGGAGTGACTCACGGCACCTTTACATGGTGCCGCCAG
CAAGGAGGGCCTCGCGCGCAAGCTGGCGCAGTCGGCCAGGGACGGATCAG
CACGTCACAAAGCCATTCGAGGCGGGAAATAGCGACTCGTTGGACTCCTG
CTGGAGAACGGCGCTTTCCCCCGCTCGAAAGATATAAACGGCAACGAACC
TCTCCACATCGCTGTGAGCACTTGCGAAGCGGGGATGGTACGGACGTTGC
TCTACAAGGGGGTTGACAAAGAAGCCATCCATAAGAAAGATTTCACGCCG
CTCTTTTCAGAAGCACAACTTGGCGAGATATCTGTAGCACTAGCTCTGCT
GGCTGCTGGCGGAAACGTTCGTGCACAGCATAGCCTGAGGCAGACGTCGC
CGATTCACGTGGCTGTCATCCGAGAAGGCGAGGACCTTGTGAGGGTTAAG
CACGGGGCGGGATGGACGCCGTGAACAATCGGGGTTGCACGACGCTCAGC
CTTGCTTCTAGCCACGGCCTCCCTGGGATGATCGACGGCCTCGTGAAGGC
TGGTGCCAGCCTGCGCTCACGAGACATGGTTCGGCTGACATCACCTCAAT
GAACTCTGTGCTTCTCCAGCCACACTTCAGTCTCCCCCCTGTTGAACCAC
GGCGCGGAAGTGAACTCGAAGGACAACATCGAAGATAAACAATTGCGTTA
CGCCGCGATGAATGCCGAAAGGCGAGGAATCGCTCTAGTCGTGGACTACC
AACTGAAAACGGGGTCGAACGACAAAATGATCAACGGCGCGGGCCGAACC
CCGGCTATCACAGGGGACGACGTCGAAATGGATAACCAGGACGTCGAGGA
TATCAAGCGTGCGAGGAAGCGTTTGGCAAACGCTCCCACCTACAGAGCAT
GGCGCGGCCGTGGACTTCTGGTTCTTTGCCGCGCCCACCCAACCAGGCTG
CAGCTTAGGCAGGAAAGTGACGTATCCCGTACCATCGGAATGAGCAACAC
TCTCAGGCTATGCACGCTGGCAAGGCGGAAGGAGGCACGGGGGGAGGAGG
CGGGGAAAGAAACCCAACGGATGGGTAGTAGCGATGACTGGGCGGCCGTG
GCAGCAAGGGCGCTAGGGTCGCAAGAGGAGGGCATGTTTCGAGCTGTTGC
GGGGTGCCTTTGGCCGAGGTAAGCTGTGTACCCTGTCTTCTGCAACACAG
CTCGTTTCCTGTAGCAGGAACATCCCACTCCCCATTGCCCACAGTCGCTG
ATTCAATGCACGTTCTGCTTTATTTTCCTTGCGTTCTGACAGTGTTGCTA
TGCTGCGGCAGATCTGTCGCGCCGACGGCTGCGGTACAGACGGCGCCCGC
AGTGACGAAAATTGTGTTTATTGTTCGTCCAAGGTTTCAAGATCACATCT
CGGCAAACCTTTTCTTTTTTTCGTCTCATCTTTCGTGGCGTCATCTACCC
TTCGCCGATTCCGGTGCTTCCGTTCACGTTTCGGCGCAGGCGCTCACACA
CACCTTGCGGCGTATGGGCAACTGACTAGTACCCATCCGGCCGGGGCCAC
ACAGGAGGGGGCTTCCGCACCGGGTTTTCCTCTTTTTTTCTGTATTTTCG
TCCCCCGCTACCGCTTCCGGTGCTTGCCTACACTTTTATCGCGAGAAGGG
TTCAGCCATCCCTTTTCCTCGTCGACGGTGAGGCCGAAGTTTGTGTGCTC
ATGAGCTTTTTAGTTATGCCATCGAGTTCCACTGCAAAGCAGTAAATCTT
TCACCCCTACCGGGATTCGAACTCACAAATTTGCCGCTGACAGGTTTTCG
AGGTTACCACTAGACCGCCGACCGGGGCGTATGAATTCGCAAATATGGAA
TAGGAGCAAGAGATGTCCTCATAGTCGGAAGCAAGATTTAGCATGTGGGC
TACAGCCAAAACGAAAGTCGACGCGCACAATAGAGCATTCGCGCTTATTT
TCCGCTCGAGATCGGGGTTGTTTTTTTGTCCAAGTGAAAATCCCTCCGAA
GCTCAGACTTGTAGCTGGCTTCCCTGTTTGGCACTACGCAAGTTTCCGCT
TGGCCCTCTTTCGCCGTCCCATGTGTCCATTTCTGGCCGGAATCTTTGCG
ACCCGCCCGCATCCGAGAACAACCTGGCGTTGGCAAGTGACTGGGAACTC
AACGCCCAGAACGTTGCAGACTAAGCTATTATCTGCTATACTGTCCGATG
ACAAAACCGACCGTCTTTCCCTGGAGCGTAAACATTTTACCAATGCAAAT
ATGATGAAGGCGAACGCCAACAGCGTAGAATATAGTAGTCTGCCTTAGCC
CCCATATCTCCGTAAAAGGCGCTAAGTGTATACCCGGAATCAACTTTGTT
TGCTTTCACCGAGCGCCTGCCGCGCCCTGACGTTACGTCGGCACAAAATG
GTCGGAGTTCGTTCGTAGTCTTGTCCCCATCGTCGCTGAGCTCTTATTGC
CCCGCATATGAATCGCGGGAAGACATTAGCAGCGCGCTTTCCCAAATGAT
TTCGTTTCATGCGTTTGGAAACGCGATCAAGCCTTGTTTCCTCGACAGCA
ACATTGTGGTCTGACACGGCGGTGGCTCCAACTGCAACGCAGTTCCCACA
ATCTTTGCCTCGTTATCACCGCACACTTTGCTTTTGCCCCATGTGCGAAG
GCTGTAGCTGTGATATTGCCGCGTCCGTTCATGATTGTTTGCGTTCACTG
TCGCATGGTGAATAAGAAGGTGCATAAGCAGATGTTCGCCATTTTGTGAG
ACAGGTGATCAGATGCCACTATTCTCGGCTTATGCAATTTGTTGGAATAT
TTTTCTGATTGTCTCCCTTCTCTACCCACGGATCACGCCCTCCCGGATTC
CGTTTCGTGACACAGTGGATGGTCGACTTGCAAGCATGCCAACATTCAGG
AGCGCATGCGGAGGTATCGTGATGCGCTAAACGTGCAATCGCGGGGCTAC
ATCGTTTGTTCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:515073..519885+

>mRNA_P-fluviatile_contig13.1662.1 ID=mRNA_P-fluviatile_contig13.1662.1|Name=mRNA_P-fluviatile_contig13.1662.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig13:515073..519885+ (Porterinema fluviatile SAG_2381)
ATGAATGCCGAAAGGCGAGGAATCGCTCTAGTCGTGGACTACCAACTGAA
AACGGGGTCGAACGACAAAATGATCAACGGCGCGGGCCGAACCCCGGCTA
TCACAGGGGACGACGTCGAAATGGATAACCAGGACGTCGAGGATATCAAG
CGTGCGAGGAAGCGTTTGGCAAACGCTCCCACCTACAGAGCATGGCGCGG
CCGTGGACTTCTGGTTCTTTGCCGCGCCCACCCAACCAGGCTGCAGCTTA
GGCAGGAAAGTGACGTATCCCGTACCATCGGAATGAGCAACACTCTCAGG
CTATGCACGCTGGCAAGGCGGAAGGAGGCACGGGGGGAGGAGGCGGGGAA
AGAAACCCAACGGATGGGTAGTAGCGATGACTGGGCGGCCGTGGCAGCAA
GGGCGCTAGGGTCGCAAGAGGAGGGCATGTTTCGAGCTGTTGCGGGGTGC
CTTTGGCCGAGATGAATGCCGAAAGGCGAGGAATCGCTCTAGTCGTGGAC
TACCAACTGAAAACGGGGTCGAACGACAAAATGATCAACGGCGCGGGCCG
AACCCCGGCTATCACAGGGGACGACGTCGAAATGGATAACCAGGACGTCG
AGGATATCAAGCGTGCGAGGAAGCGTTTGGCAAACGCTCCCACCTACAGA
GCATGGCGCGGCCGTGGACTTCTGGTTCTTTGCCGCGCCCACCCAACCAG
GCTGCAGCTTAGGCAGGAAAGTGACGTATCCCGTACCATCGGAATGAGCA
ACACTCTCAGGCTATGCACGCTGGCAAGGCGGAAGGAGGCACGGGGGGAG
GAGGCGGGGAAAGAAACCCAACGGATGGGTAGTAGCGATGACTGGGCGGC
CGTGGCAGCAAGGGCGCTAGGGTCGCAAGAGGAGGGCATGTTTCGAGCTG
TTGCGGGGTGCCTTTGGCCGAGGCGCTCACACACACCTTGCGGCGTATGG
GCAACTGACTAGGCGCTCACACACACCTTGCGGCGTATGGGCAACTGACT
AG
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