mRNA_P-fluviatile_contig13.1660.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1660.1
Unique NamemRNA_P-fluviatile_contig13.1660.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:498163..498757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size595
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1660.1prot_P-fluviatile_contig13.1660.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 498171..498551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.062152-UTR-P-fluviatile_contig13:498162..4981701622815537.062152-UTR-P-fluviatile_contig13:498162..498170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 498163..498170 +
1693562173.4526327-UTR-P-fluviatile_contig13:498162..4981701693562173.4526327-UTR-P-fluviatile_contig13:498162..498170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 498163..498170 +
1622815537.084721-UTR-P-fluviatile_contig13:498551..4987571622815537.084721-UTR-P-fluviatile_contig13:498551..498757Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 498552..498757 +
1693562173.7583127-UTR-P-fluviatile_contig13:498551..4987571693562173.7583127-UTR-P-fluviatile_contig13:498551..498757Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 498552..498757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.0734777-CDS-P-fluviatile_contig13:498170..4985511622815537.0734777-CDS-P-fluviatile_contig13:498170..498551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 498171..498551 +
1693562173.462301-CDS-P-fluviatile_contig13:498170..4985511693562173.462301-CDS-P-fluviatile_contig13:498170..498551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 498171..498551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1660.1

>prot_P-fluviatile_contig13.1660.1 ID=prot_P-fluviatile_contig13.1660.1|Name=mRNA_P-fluviatile_contig13.1660.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=127bp
MVLHSRSAAVAAPPRGRGWLLPPPPPPPPPLPSEARPQVPRAKSLLTVVL
VLSSSSMGVRSGGRPCAGKGALALLSPLGRLEPNMADISNTTNRRTPVCS
RHLSISAHATHKSHKQSEREKMPCQE*
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mRNA from alignment at P-fluviatile_contig13:498163..498757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1660.1 ID=mRNA_P-fluviatile_contig13.1660.1|Name=mRNA_P-fluviatile_contig13.1660.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=595bp|location=Sequence derived from alignment at P-fluviatile_contig13:498163..498757+ (Porterinema fluviatile SAG_2381)
CCCTGCTGATGGTGCTGCACAGCCGGTCTGCTGCTGTTGCCGCCCCGCCG
AGAGGGAGGGGGTGGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGTT
GCCGTCAGAGGCTCGCCCGCAAGTCCCGAGAGCAAAGTCCTTACTTACTG
TGGTGTTGGTGTTGTCGTCTTCGTCCATGGGCGTGAGAAGCGGGGGCCGG
CCCTGCGCGGGGAAAGGCGCTTTGGCTCTCCTGTCGCCGTTGGGTCGGCT
TGAGCCAAACATGGCGGATATATCAAACACAACCAACCGCCGGACCCCGG
TGTGTTCCAGACACCTCTCTATCTCTGCACACGCAACACACAAGTCTCAC
AAGCAGTCAGAGAGAGAGAAAATGCCGTGCCAAGAATAGAGGGCCGCAGA
GGCAAACAGGACGCGTGGTCCGATGTGTGCTGTGGTCTCGCTTCTGGCTC
TCTGTATCTCACTCTCGTTCTCGTATGTGGTGGTGAGACTCTCCTCGTGG
TTCCACGCCGGTGGTCAGCAGCGCATCGAAAGAGTTTACTGGATTCCGGA
AGTTTGTGCTTCCTACCACCACACGTACGGCCCACAGGCGGAGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:498163..498757+

>mRNA_P-fluviatile_contig13.1660.1 ID=mRNA_P-fluviatile_contig13.1660.1|Name=mRNA_P-fluviatile_contig13.1660.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=762bp|location=Sequence derived from alignment at P-fluviatile_contig13:498163..498757+ (Porterinema fluviatile SAG_2381)
ATGGTGCTGCACAGCCGGTCTGCTGCTGTTGCCGCCCCGCCGAGAGGGAG
GGGGTGGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGTTGCCGTCAG
AGGCTCGCCCGCAAGTCCCGAGAGCAAAGTCCTTACTTACTGTGGTGTTG
GTGTTGTCGTCTTCGTCCATGGGCGTGAGAAGCGGGGGCCGGCCCTGCGC
GGGGAAAGGCGCTTTGGCTCTCCTGTCGCCGTTGGGTCGGCTTGAGCCAA
ACATGGCGGATATATCAAACACAACCAACCGCCGGACCCCGGTGTGTTCC
AGACACCTCTCTATCTCTGCACACGCAACACACAAGTCTCACAAGCAGTC
AGAGAGAGAGAAAATGCCGTGCCAAGAATAGATGGTGCTGCACAGCCGGT
CTGCTGCTGTTGCCGCCCCGCCGAGAGGGAGGGGGTGGCTGCTGCCGCCG
CCGCCGCCGCCGCCGCCGCCGTTGCCGTCAGAGGCTCGCCCGCAAGTCCC
GAGAGCAAAGTCCTTACTTACTGTGGTGTTGGTGTTGTCGTCTTCGTCCA
TGGGCGTGAGAAGCGGGGGCCGGCCCTGCGCGGGGAAAGGCGCTTTGGCT
CTCCTGTCGCCGTTGGGTCGGCTTGAGCCAAACATGGCGGATATATCAAA
CACAACCAACCGCCGGACCCCGGTGTGTTCCAGACACCTCTCTATCTCTG
CACACGCAACACACAAGTCTCACAAGCAGTCAGAGAGAGAGAAAATGCCG
TGCCAAGAATAG
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