mRNA_P-fluviatile_contig13.1657.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1657.1
Unique NamemRNA_P-fluviatile_contig13.1657.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:451560..452137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1657.1prot_P-fluviatile_contig13.1657.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 451733..452074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.9951522-UTR-P-fluviatile_contig13:451559..4517321622815536.9951522-UTR-P-fluviatile_contig13:451559..451732Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 451560..451732 +
1693562173.4239902-UTR-P-fluviatile_contig13:451559..4517321693562173.4239902-UTR-P-fluviatile_contig13:451559..451732Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 451560..451732 +
1622815537.0295625-UTR-P-fluviatile_contig13:452074..4521371622815537.0295625-UTR-P-fluviatile_contig13:452074..452137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 452075..452137 +
1693562173.442947-UTR-P-fluviatile_contig13:452074..4521371693562173.442947-UTR-P-fluviatile_contig13:452074..452137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 452075..452137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.0153475-CDS-P-fluviatile_contig13:451732..4520741622815537.0153475-CDS-P-fluviatile_contig13:451732..452074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 451733..452074 +
1693562173.433544-CDS-P-fluviatile_contig13:451732..4520741693562173.433544-CDS-P-fluviatile_contig13:451732..452074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 451733..452074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1657.1

>prot_P-fluviatile_contig13.1657.1 ID=prot_P-fluviatile_contig13.1657.1|Name=mRNA_P-fluviatile_contig13.1657.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp
MYLCSPSGTKYGVQTVSKFGNRFCDLMRSGNGEHVTSSCVRCSVPTFHES
VAFMHCLLMQQKNPAESKPATCLRQAELCRRLACFSSPRYSTCTQKRMYI
RARFRAFSRRVSG*
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mRNA from alignment at P-fluviatile_contig13:451560..452137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1657.1 ID=mRNA_P-fluviatile_contig13.1657.1|Name=mRNA_P-fluviatile_contig13.1657.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=578bp|location=Sequence derived from alignment at P-fluviatile_contig13:451560..452137+ (Porterinema fluviatile SAG_2381)
TGGGGAGTTTTTCGACCTTGCAAGTGCGACAAACACCAAACATGTGTGTG
TAGGGGGCAACGAGTGATGATCTTTCGGCGACAGACGGGCACGAGGAACA
TTTCAAGCAAACCATCCGCGGGTCTGAATAAACACACTCAAGGTCTTTGC
CGCGCGCGATTTCGTTCGGAGATATGTATCTCTGCTCCCCCTCCGGCACA
AAATACGGCGTACAGACAGTATCCAAGTTCGGGAACAGATTTTGTGACTT
GATGAGGTCTGGGAATGGCGAGCATGTGACATCCAGCTGCGTACGCTGTT
CTGTCCCCACATTTCATGAATCAGTCGCATTCATGCATTGCCTACTCATG
CAGCAAAAGAACCCTGCGGAATCCAAACCAGCAACGTGTTTGCGCCAGGC
CGAGTTGTGCCGACGCCTTGCTTGTTTTTCATCTCCCCGTTACAGTACCT
GTACACAAAAGCGCATGTATATTCGAGCGCGTTTCCGCGCATTTTCCAGA
AGAGTGAGTGGGTGATTGTTCCTCGTGGTTCCACAACAACACCAGGCGGG
GGAAGAAAGGAGTCGTGGCGCTCACCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:451560..452137+

>mRNA_P-fluviatile_contig13.1657.1 ID=mRNA_P-fluviatile_contig13.1657.1|Name=mRNA_P-fluviatile_contig13.1657.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig13:451560..452137+ (Porterinema fluviatile SAG_2381)
ATGTATCTCTGCTCCCCCTCCGGCACAAAATACGGCGTACAGACAGTATC
CAAGTTCGGGAACAGATTTTGTGACTTGATGAGGTCTGGGAATGGCGAGC
ATGTGACATCCAGCTGCGTACGCTGTTCTGTCCCCACATTTCATGAATCA
GTCGCATTCATGCATTGCCTACTCATGCAGCAAAAGAACCCTGCGGAATC
CAAACCAGCAACGTGTTTGCGCCAGGCCGAGTTGTGCCGACGCCTTGCTT
GTTTTTCATCTCCCCGTTACAGTACCTGTACACAAAAGCGCATGTATATT
CGAGCGCGTTTCCGCGCATTTTCCAGAAGAGTGAGTGGGTGAATGTATCT
CTGCTCCCCCTCCGGCACAAAATACGGCGTACAGACAGTATCCAAGTTCG
GGAACAGATTTTGTGACTTGATGAGGTCTGGGAATGGCGAGCATGTGACA
TCCAGCTGCGTACGCTGTTCTGTCCCCACATTTCATGAATCAGTCGCATT
CATGCATTGCCTACTCATGCAGCAAAAGAACCCTGCGGAATCCAAACCAG
CAACGTGTTTGCGCCAGGCCGAGTTGTGCCGACGCCTTGCTTGTTTTTCA
TCTCCCCGTTACAGTACCTGTACACAAAAGCGCATGTATATTCGAGCGCG
TTTCCGCGCATTTTCCAGAAGAGTGAGTGGGTGA
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