mRNA_P-fluviatile_contig13.1653.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1653.1
Unique NamemRNA_P-fluviatile_contig13.1653.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:425008..425785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.338301-CDS-P-fluviatile_contig13:425007..4253061622815542.338301-CDS-P-fluviatile_contig13:425007..425306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425008..425306 +
1693562203.2508543-CDS-P-fluviatile_contig13:425007..4253061693562203.2508543-CDS-P-fluviatile_contig13:425007..425306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425008..425306 +
1622815542.349987-CDS-P-fluviatile_contig13:425756..4257841622815542.349987-CDS-P-fluviatile_contig13:425756..425784Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425757..425784 +
1693562203.2637453-CDS-P-fluviatile_contig13:425756..4257841693562203.2637453-CDS-P-fluviatile_contig13:425756..425784Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 425757..425784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1653.1prot_P-fluviatile_contig13.1653.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 425008..425784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1653.1

>prot_P-fluviatile_contig13.1653.1 ID=prot_P-fluviatile_contig13.1653.1|Name=mRNA_P-fluviatile_contig13.1653.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
CSVDGGVAVEDEGDTMGNMPRNAANGGDDCQGCQQWAASGSHSRTAGTCA
RAILAALTVTPGMPGACLHLETLGLHFVVGSIDERIVVLGWEGCGQDDLS
PAEPAPPLK
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mRNA from alignment at P-fluviatile_contig13:425008..425785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1653.1 ID=mRNA_P-fluviatile_contig13.1653.1|Name=mRNA_P-fluviatile_contig13.1653.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=778bp|location=Sequence derived from alignment at P-fluviatile_contig13:425008..425785+ (Porterinema fluviatile SAG_2381)
TGCAGCGTTGACGGTGGTGTTGCGGTCGAAGATGAAGGGGATACCATGGG
AAATATGCCCCGAAACGCCGCCAATGGCGGTGACGACTGCCAGGGTTGCC
AGCAATGGGCAGCCTCCGGCAGTCACAGTCGGACCGCAGGGACTTGCGCT
CGCGCAATTTTAGCCGCACTAACGGTGACTCCGGGGATGCCAGGGGCATG
CTTGCATCTCGAGACACTGGGGCTGCATTTCGTGGTGGGGTCGATCGACG
AAAGGATTGTTGTCCTTGGCTGGGAGGGATGCGGGCAAGATGACCTCAGG
TGATTACGCCTGAATCAGGCTTTCTCAGGAACACGGCATAACTATGTCAG
GGGTATGAAGAACTTGGTACATTTTGAGTTGATCGCGAAGGGATCGGAAA
ATTCCGTTCACCACAAGAGATAGCCCAAGCTGAGAAGGACCACGAGGGAC
GAGTGCAAGCAGGAACCGCAGATTACATGAACCAGCCCCTCCGCTGCGAC
AGCACTTACCCTTGAAAGTGATCAATAGGGTAAGGATTTAGCTATCTAGA
CCAAACGATTTGTAATCTGAGGTACGTGCTCGCTTGTCGTTGGCGCAGAA
TGCATTGTTGGTGACGGGTCAGAACAATTATCATAGATCCCTTGCGCCGC
TACCGTACGCGACTAAGCGATCAGCAATAGCAAGCCAATGCATCTCGTGA
AAATGCCACGCACCAGCACTAAAAGTTATCGTTCGTTGCGTCATTCCAGC
CCAGCAGAGCCCGCGCCGCCGCTCAAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:425008..425785+

>mRNA_P-fluviatile_contig13.1653.1 ID=mRNA_P-fluviatile_contig13.1653.1|Name=mRNA_P-fluviatile_contig13.1653.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig13:425008..425785+ (Porterinema fluviatile SAG_2381)
TGCAGCGTTGACGGTGGTGTTGCGGTCGAAGATGAAGGGGATACCATGGG
AAATATGCCCCGAAACGCCGCCAATGGCGGTGACGACTGCCAGGGTTGCC
AGCAATGGGCAGCCTCCGGCAGTCACAGTCGGACCGCAGGGACTTGCGCT
CGCGCAATTTTAGCCGCACTAACGGTGACTCCGGGGATGCCAGGGGCATG
CTTGCATCTCGAGACACTGGGGCTGCATTTCGTGGTGGGGTCGATCGACG
AAAGGATTGTTGTCCTTGGCTGGGAGGGATGCGGGCAAGATGACCTCAGT
GCAGCGTTGACGGTGGTGTTGCGGTCGAAGATGAAGGGGATACCATGGGA
AATATGCCCCGAAACGCCGCCAATGGCGGTGACGACTGCCAGGGTTGCCA
GCAATGGGCAGCCTCCGGCAGTCACAGTCGGACCGCAGGGACTTGCGCTC
GCGCAATTTTAGCCGCACTAACGGTGACTCCGGGGATGCCAGGGGCATGC
TTGCATCTCGAGACACTGGGGCTGCATTTCGTGGTGGGGTCGATCGACGA
AAGGATTGTTGTCCTTGGCTGGGAGGGATGCGGGCAAGATGACCTCAGCC
CAGCAGAGCCCGCGCCGCCGCTCAAGCCCAGCAGAGCCCGCGCCGCCGCT
CAAG
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