mRNA_P-fluviatile_contig13.1651.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1651.1
Unique NamemRNA_P-fluviatile_contig13.1651.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:420243..421288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1651.1prot_P-fluviatile_contig13.1651.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 420243..421159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.211995-CDS-P-fluviatile_contig13:420242..4203621622815535.211995-CDS-P-fluviatile_contig13:420242..420362Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 420243..420362 +
1693562169.196162-CDS-P-fluviatile_contig13:420242..4203621693562169.196162-CDS-P-fluviatile_contig13:420242..420362Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 420243..420362 +
1622815535.2289815-CDS-P-fluviatile_contig13:421027..4211591622815535.2289815-CDS-P-fluviatile_contig13:421027..421159Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 421028..421159 +
1693562169.2060978-CDS-P-fluviatile_contig13:421027..4211591693562169.2060978-CDS-P-fluviatile_contig13:421027..421159Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 421028..421159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.2418814-UTR-P-fluviatile_contig13:421159..4212881622815535.2418814-UTR-P-fluviatile_contig13:421159..421288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 421160..421288 +
1693562169.215174-UTR-P-fluviatile_contig13:421159..4212881693562169.215174-UTR-P-fluviatile_contig13:421159..421288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 421160..421288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1651.1

>prot_P-fluviatile_contig13.1651.1 ID=prot_P-fluviatile_contig13.1651.1|Name=mRNA_P-fluviatile_contig13.1651.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=84bp
MSEKVHKSTRWGSQSRDLRSLCGGLTFIRHTSSVLGTIHEGGIGFELLKP
QTPFPATGKIWGSGVRHGALKLLPAHRQDRSHV*
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mRNA from alignment at P-fluviatile_contig13:420243..421288+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1651.1 ID=mRNA_P-fluviatile_contig13.1651.1|Name=mRNA_P-fluviatile_contig13.1651.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1046bp|location=Sequence derived from alignment at P-fluviatile_contig13:420243..421288+ (Porterinema fluviatile SAG_2381)
ATGTCGGAGAAAGTCCACAAAAGCACCCGCTGGGGATCGCAATCCCGAGA
TCTGCGATCACTTTGTGGGGGGCTGACGTTCATCCGACACACCTCAAGCG
TGTTGGGAACGATTCACGAGGTGCGCGAGTGGGGTGTAGGTGTTCCACGC
TCTCGTGAGATTTCATTCTTGTAGGTGCATTGCTTCGCCACTTTTTCATT
CCTCCCCTGTTCATTTTCCCCGCAGTGTCGTGCGACAGGATCGAAGAATT
TCTCCTCGCGGACCGCGATGGCGAATTTTACCGCATTTCGGTGTTTATGA
ATGGCTCGTCACACACCTCCTATGCTGGTACTTGCCACAAGGAGCAGGAC
ACGTCGAACGGTAACCACATTCGCAGGCACCCCCGCCCCCGTATCCAGTG
CAAGAAGCTTGAGATAAGGTCGGTCTGAGTAAAGTACGGGCTTCTGGGCG
TCTTTTCCTTCCCAGTTTCAGGGAAAGCACTGATTCCAGTCCCTATACGG
GGCGTTAGGCATGGCGTCTCGCGTTGCTCGTGCTAGCCAAAAAAATCAAC
AGGCGATCAGGGCTTCCCCCCACACAGGAGCGCACTTTTCTTCAGAACAA
ACGCCATAGGCTCTACCTCACAAAGACGTACGTAACGGCAGCTATCCGTC
CGCCTGCCCGCCGTTCTTCGCAAAGTGCCGCCGTCCGCAACATGGCATCC
TCAACATACCACACGCTAACCGCTTGCTTACCTGTAATTCGCCACATCCT
CCCGGTACTCGTGCGTATACACGCCGGTTCTACAGGGCGGAATTGGCTTC
GAGTTACTCAAGCCACAAACACCATTCCCTGCTACCGGCAAGATTTGGGG
GTCTGGTGTTCGCCACGGCGCACTCAAATTGCTTCCCGCTCATCGTCAGG
ATCGCTCTCACGTCTAGCCCAGCTGATGGCGACTCTGCGGGGGGCGGCCA
ACTTTTTGGAAAGAGCAACGTAAAAGGAGGCCCGGTTGCTGCACATGAAG
CACAAGCTGCTACGGTATCGTGGGAGATCCTTAAAGGGGCGAGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:420243..421288+

>mRNA_P-fluviatile_contig13.1651.1 ID=mRNA_P-fluviatile_contig13.1651.1|Name=mRNA_P-fluviatile_contig13.1651.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=504bp|location=Sequence derived from alignment at P-fluviatile_contig13:420243..421288+ (Porterinema fluviatile SAG_2381)
ATGTCGGAGAAAGTCCACAAAAGCACCCGCTGGGGATCGCAATCCCGAGA
TCTGCGATCACTTTGTGGGGGGCTGACGTTCATCCGACACACCTCAAGCG
TGTTGGGAACGATTCACGAGATGTCGGAGAAAGTCCACAAAAGCACCCGC
TGGGGATCGCAATCCCGAGATCTGCGATCACTTTGTGGGGGGCTGACGTT
CATCCGACACACCTCAAGCGTGTTGGGAACGATTCACGAGGGCGGAATTG
GCTTCGAGTTACTCAAGCCACAAACACCATTCCCTGCTACCGGCAAGATT
TGGGGGTCTGGTGTTCGCCACGGCGCACTCAAATTGCTTCCCGCTCATCG
TCAGGATCGCTCTCACGTCTAGGGCGGAATTGGCTTCGAGTTACTCAAGC
CACAAACACCATTCCCTGCTACCGGCAAGATTTGGGGGTCTGGTGTTCGC
CACGGCGCACTCAAATTGCTTCCCGCTCATCGTCAGGATCGCTCTCACGT
CTAG
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