mRNA_P-fluviatile_contig13.1648.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1648.1
Unique NamemRNA_P-fluviatile_contig13.1648.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:393470..394155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.1549466-CDS-P-fluviatile_contig13:393469..3935511622815535.1549466-CDS-P-fluviatile_contig13:393469..393551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 393470..393551 +
1693562169.1778297-CDS-P-fluviatile_contig13:393469..3935511693562169.1778297-CDS-P-fluviatile_contig13:393469..393551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 393470..393551 +
1622815535.1655674-CDS-P-fluviatile_contig13:394074..3941541622815535.1655674-CDS-P-fluviatile_contig13:394074..394154Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 394075..394154 +
1693562169.1866524-CDS-P-fluviatile_contig13:394074..3941541693562169.1866524-CDS-P-fluviatile_contig13:394074..394154Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 394075..394154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1648.1prot_P-fluviatile_contig13.1648.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 393470..394154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1648.1

>prot_P-fluviatile_contig13.1648.1 ID=prot_P-fluviatile_contig13.1648.1|Name=mRNA_P-fluviatile_contig13.1648.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
PLRRAGGAAEGLSRHGLGGGEAWQEVQGFTGAAGGISTAGGPGLRRPWAG
ASSG
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mRNA from alignment at P-fluviatile_contig13:393470..394155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1648.1 ID=mRNA_P-fluviatile_contig13.1648.1|Name=mRNA_P-fluviatile_contig13.1648.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=686bp|location=Sequence derived from alignment at P-fluviatile_contig13:393470..394155+ (Porterinema fluviatile SAG_2381)
CCCCTCCGTCGCGCAGGAGGTGCGGCGGAGGGACTCTCGCGGCACGGCCT
TGGCGGCGGGGAAGCTTGGCAGGAAGTCCAAGGTGGGGCGCCGTGCCCCG
AAGTCGTACGAATCTTCCGACGACCCGCAAGAGATGCTGTCGCAGCTCAT
TCCCGCTGTCATGAGGAAGTTTAGTCGGGAAGAGGCCGCGGCTGAGCCTG
CCGCAGCATCCGCGTCGCAACAAGGAGCGCTGGCCGCCCCGCAGCACGCC
ATGGTGGATGCGCTTGGTCAGCGTGTGAACCACATGGGACAGCGGCTCGG
GGGATAGAGGCCCATCTGGGGGTTGTCCCAAGAGGTTGCTAACCTGGGTT
CGCAGATTGGAAGGATGCTCGGCATGCTAGGGAGCGCGGCGCCGCAAGCT
CCTCGCGGCAGAGTGGGACCCCCCGCCGGTGTCGGTGTCGGCATGTTCTC
CCATCTCCCGGGCCACCAACCCCTGTACCAATCCGTTCCTCACTCGGGGC
TAGCCAGTCAAAGCTCCTCGGTAGGTGTGTCCTCCCAGTCGGGAGCCGTG
CCGAATAGGGGCAGCCTGCCGCAAAACCCACCTCTCGCTGCATCACCTTT
TCCAGGTTTTACTGGTGCGGCGGGAGGGATTTCCACCGCAGGAGGGCCTG
GGCTTCGACGGCCCTGGGCCGGGGCCAGCAGCGGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:393470..394155+

>mRNA_P-fluviatile_contig13.1648.1 ID=mRNA_P-fluviatile_contig13.1648.1|Name=mRNA_P-fluviatile_contig13.1648.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig13:393470..394155+ (Porterinema fluviatile SAG_2381)
CCCCTCCGTCGCGCAGGAGGTGCGGCGGAGGGACTCTCGCGGCACGGCCT
TGGCGGCGGGGAAGCTTGGCAGGAAGTCCAAGCCCCTCCGTCGCGCAGGA
GGTGCGGCGGAGGGACTCTCGCGGCACGGCCTTGGCGGCGGGGAAGCTTG
GCAGGAAGTCCAAGGTTTTACTGGTGCGGCGGGAGGGATTTCCACCGCAG
GAGGGCCTGGGCTTCGACGGCCCTGGGCCGGGGCCAGCAGCGGCGTTTTA
CTGGTGCGGCGGGAGGGATTTCCACCGCAGGAGGGCCTGGGCTTCGACGG
CCCTGGGCCGGGGCCAGCAGCGGC
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