mRNA_P-fluviatile_contig13.1645.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1645.1
Unique NamemRNA_P-fluviatile_contig13.1645.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1645.1 vs. uniprot
Match: A0A6H5JN80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN80_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.100e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = -2 
Query:  494 FDLIWPDPMSLTHYNWVYSRQEAPGVIR*ASCCFGRMPASW 616
            FDLIW DP+S+THYNW Y  ++APGVIR     +  M  SW
Sbjct:  164 FDLIWTDPLSMTHYNWNYPEEDAPGVIRNVFRAYWSMSMSW 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN80_9PHAE2.100e-656.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:332231..332847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1645.1prot_P-fluviatile_contig13.1645.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 332328..332651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.9312527-UTR-P-fluviatile_contig13:332230..3323271622815536.9312527-UTR-P-fluviatile_contig13:332230..332327Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 332231..332327 +
1693562173.398575-UTR-P-fluviatile_contig13:332230..3323271693562173.398575-UTR-P-fluviatile_contig13:332230..332327Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 332231..332327 +
1622815536.9522197-UTR-P-fluviatile_contig13:332651..3328471622815536.9522197-UTR-P-fluviatile_contig13:332651..332847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 332652..332847 +
1693562173.4145896-UTR-P-fluviatile_contig13:332651..3328471693562173.4145896-UTR-P-fluviatile_contig13:332651..332847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 332652..332847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.9424767-CDS-P-fluviatile_contig13:332327..3326511622815536.9424767-CDS-P-fluviatile_contig13:332327..332651Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 332328..332651 +
1693562173.406266-CDS-P-fluviatile_contig13:332327..3326511693562173.406266-CDS-P-fluviatile_contig13:332327..332651Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 332328..332651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1645.1

>prot_P-fluviatile_contig13.1645.1 ID=prot_P-fluviatile_contig13.1645.1|Name=mRNA_P-fluviatile_contig13.1645.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MSFDRHIQASYAVAPTFSRLIPLKSAGPRYRAGLHLLAALNAITSRLLAS
KQRGHNSFRLRSSTGFHMQPAHLHLPFSSNSKLIYLTLPLPPPPKPATEI
LRSWKPS*
back to top

mRNA from alignment at P-fluviatile_contig13:332231..332847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1645.1 ID=mRNA_P-fluviatile_contig13.1645.1|Name=mRNA_P-fluviatile_contig13.1645.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=617bp|location=Sequence derived from alignment at P-fluviatile_contig13:332231..332847+ (Porterinema fluviatile SAG_2381)
CTCCGCAATCGTTTGCGCAAGTATTCTTCGTTTTCCTCCTGAGAGAAAAG
AATGCGGAGGTCGGTTTTTCAACCGAAAGCGCGAGAGGCCCTAGGAAATG
AGTTTCGACCGTCACATACAAGCCAGTTATGCAGTGGCACCAACCTTCTC
CAGGCTCATACCCCTCAAATCTGCTGGCCCCCGATACCGAGCTGGTCTCC
ATCTTCTTGCTGCTCTCAATGCAATCACCTCCCGACTCCTTGCATCAAAA
CAGCGAGGTCATAACTCATTTCGTCTGCGCTCTTCTACTGGATTCCATAT
GCAGCCAGCCCATCTACACTTGCCATTCTCCAGCAATTCCAAACTGATTT
ACCTCACGCTGCCACTACCTCCACCACCGAAACCTGCCACCGAAATATTG
CGATCGTGGAAGCCTTCGTGATGACGAATGAGTGAATACCCCTTCGTCAA
GCAGTCCATGCTGAGGCCAACAGCAGGCACCTGTAAATGGCAACCAAGAA
GCAGGCATACGACCGAAGCAGCAAGATGCTTACCTGATTACGCCAGGGGC
CTCTTGGCGGGAGTATACCCAGTTATAGTGCGTCAGCGACATCGGGTCCG
GCCAGATGAGGTCGAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:332231..332847+

>mRNA_P-fluviatile_contig13.1645.1 ID=mRNA_P-fluviatile_contig13.1645.1|Name=mRNA_P-fluviatile_contig13.1645.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig13:332231..332847+ (Porterinema fluviatile SAG_2381)
ATGAGTTTCGACCGTCACATACAAGCCAGTTATGCAGTGGCACCAACCTT
CTCCAGGCTCATACCCCTCAAATCTGCTGGCCCCCGATACCGAGCTGGTC
TCCATCTTCTTGCTGCTCTCAATGCAATCACCTCCCGACTCCTTGCATCA
AAACAGCGAGGTCATAACTCATTTCGTCTGCGCTCTTCTACTGGATTCCA
TATGCAGCCAGCCCATCTACACTTGCCATTCTCCAGCAATTCCAAACTGA
TTTACCTCACGCTGCCACTACCTCCACCACCGAAACCTGCCACCGAAATA
TTGCGATCGTGGAAGCCTTCGTGAATGAGTTTCGACCGTCACATACAAGC
CAGTTATGCAGTGGCACCAACCTTCTCCAGGCTCATACCCCTCAAATCTG
CTGGCCCCCGATACCGAGCTGGTCTCCATCTTCTTGCTGCTCTCAATGCA
ATCACCTCCCGACTCCTTGCATCAAAACAGCGAGGTCATAACTCATTTCG
TCTGCGCTCTTCTACTGGATTCCATATGCAGCCAGCCCATCTACACTTGC
CATTCTCCAGCAATTCCAAACTGATTTACCTCACGCTGCCACTACCTCCA
CCACCGAAACCTGCCACCGAAATATTGCGATCGTGGAAGCCTTCGTGA
back to top