mRNA_P-fluviatile_contig13.1636.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1636.1
Unique NamemRNA_P-fluviatile_contig13.1636.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 1.200e-144
Identity = 214/288 (74.31%), Postives = 244/288 (84.72%), Query Frame = 3
Query:  195 QKQTKAMPIGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGWGREGSGVTMQRPGGAGAGA-----AGMPAPGSAQPLRGFPRPGGGRADWGTGRTLGSS 1043
            +++ K MP+G  NG GG+SPEELFRSIPPVSKVLIVGMVG++LS+V+G+ +PY++ALSWPLVW KFH+WRLFT+G+FPG P Y  LM + S+GMFSIRYE+DGF+MGGGGGSADYAYMLLFGFV IE SLLLLFYQP++IFT A+ FYICYVWSRKNPGMSVSFWGI INALYVPW MVA+ VVLG S+FMALLGIAVGHLFYFLVDVLPDLHDIDLL+TPQ  V+MLGWG EGSGVTMQ  G           AGMPAPG+ +P R  PR GGG + WGTGRTLGSS
Sbjct:   13 RQKKKNMPLGVFNGSGGSSPEELFRSIPPVSKVLIVGMVGTILSVVLGVCSPYQYALSWPLVWNKFHLWRLFTSGMFPGTPSYETLMLMISMGMFSIRYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQAGGXXXXXXXXXXXAGMPAPGAVRPPRDIPRTGGG-SGWGTGRTLGSS 299          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.660e-95
Identity = 153/191 (80.10%), Postives = 167/191 (87.43%), Query Frame = 3
Query:  486 RYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGWGREGSGVTMQRPGG-----AGAGAAGMPAPGSAQPLRGFPRPGGGRADWGTGRTLGSS 1043
            RYE+DGF+MGGGGGSADYAYMLLFGFV IEASLLLLFYQP++IFTEA+ FYICYVWSRKNPGMSVSFWGI INALYVPW M+AM V +GAS+FMALLGIAVGHLFYFLVDVLPDLH+IDLL+TPQ  V+MLGWGREGSGVTMQ  GG     A AGAAG+PAPG  +P R  PR GGG + WGTGRTLGSS
Sbjct:   10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGVPAPGVVRPPRDIPRTGGG-SGWGTGRTLGSS 199          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA)

HSP 1 Score: 239 bits (610), Expect = 3.080e-74
Identity = 139/275 (50.55%), Postives = 173/275 (62.91%), Query Frame = 3
Query:  219 IGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGWGREGSGVTMQRPGGAGAGAAGMPAPGSAQPLRGFPRPGGGRADWGTG-RTLGS 1040
            IG V   G  SPEE F+S+PPVSKVLI  +VGS + +++G+   Y  AL W  +  KF IWRL+T  VF G P +  LM++   G +SIRYE+D F+ GGGGGSADYA+ML FG   +    L  F  P+L  +  L F I YVWSRK P +  SFWGI + ++YVPW MVA  ++ GAS F  LLGI VGHL+YFLVDV+PD    D+L TP    D+ G+G   +GV  QR           PAPG A P RGFPRPGGG   WG+G R LG+
Sbjct:    7 IGAVGAAG--SPEEWFKSLPPVSKVLITSLVGSTVLVMLGVIDAYNLALLWSPLRHKFEIWRLYTNAVFLGAPSFPFLMNLMIFGQYSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVPFL--SIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGV--QR----------FPAPGHAAPPRGFPRPGGGHT-WGSGGRPLGT 264          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.100e-51
Identity = 110/280 (39.29%), Postives = 166/280 (59.29%), Query Frame = 3
Query:  219 IGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDG-FNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSF-WGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGWGRE---GSGVTMQRPGGAGAGAAGMPAPGSAQPLRGFPRPGGGRADWGTGRTLGSS 1043
            IG V  GG  SP++ + S+P ++KV +   +   L++  G+       L++PL+WKKF  WRL T     G  G+G L++ + +  +S +YE  G FN GGGGG +DYA+M++FG V +    ++ ++       + L F++ YVWSR+ P ++VSF +G++I ++Y PWA VA  ++LG S FMALLGIAVGHL+YFL +++PD +D ++LKTP   +   G+G      +    QR  G+  G  G PA  S      FP PGG    WG G  LG++
Sbjct:    4 IGRVGQGG--SPQDWYNSVPFITKVWLTSTLAVTLAVNFGILPAGHLFLNFPLIWKKFQFWRLLTNFTCMGKLGFGTLITFYMLYSYSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMN---IIGYFMNTPFMAQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGYGAYHPVNTAPAAQR--GSVNGTGGQPANSS------FPMPGG--RQWGQGHVLGTN 268          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A6H5KUK6_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK6_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.530e-49
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = 3
Query:  213 MPIGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYE 494
            MP+GFVNGG GNSPEELFRSIPPVSKVLI+GMVG+M S+V+G+ +PYE+ALSWPLVW KFH+WRLFT+G+FPG PGYGALMSIFSIGMFSIR+ 
Sbjct:    1 MPLGFVNGGSGNSPEELFRSIPPVSKVLILGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGKPGYGALMSIFSIGMFSIRWS 94          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A7S0SWB6_9STRA (Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.720e-47
Identity = 100/274 (36.50%), Postives = 166/274 (60.58%), Query Frame = 3
Query:  237 GGGNSPEELFRSIPPVSKVLIVG--MVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGW--GREGSGVT-MQRPGGAGAGAAGMPAPGSAQPLRGFPRPGGGRADWGTGRTLGSS 1043
            G G+S ++ + +IP V+KVLI    ++G +L+    L  P +  L W  +W KFHIWRLFT  VF G   +  LM    +   S++YE + +N GGGG SADY Y++++  V +   L++ +Y  ++I ++ L + I YVWSR+     V+ +G +   LY+PW  + + +++G S+   L+GIAVGH +YFL++V+P ++++DL++TP+  +D++ +  GR  + ++ +  P  A A  AG P  G+     GFP  G G  +WG GR LG++
Sbjct:    9 GQGDSIQDWYNNIPFVTKVLITSTVVIGGLLTF--QLIPPQDLILDWRFIWHKFHIWRLFTPFVFAGSFSFNFLMHTVVLYQNSLKYENNPYNTGGGGSSADYLYLIIYSIVLL---LVIAYYMNFMILSDPLMYVIVYVWSRRESESVVNMYGFKFKGLYLPWIYIGISMLMGNSIVPPLIGIAVGHSYYFLIEVMPTIYNVDLIRTPKFCIDIITYSTGRTPNVLSNIPIPNLAAAPNAGAPVRGN-----GFPNLGTGH-NWGRGRVLGAN 271          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A8J2WZQ4_9STRA (Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZQ4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.520e-41
Identity = 80/222 (36.04%), Postives = 128/222 (57.66%), Query Frame = 3
Query:  219 IGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFI-EASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLG 881
            +G V  G  N  ++   S+PPV++V  V   G+   +  GL  PY    SWP V  +F +WRL T   F G   +  L++++ +  +S  YE   +N GGGG +ADY +M+  G + +   S  +    P     +A+ + + YVWSR+NP   VS +G  + A+ +PWA+ A  +V+G S+ + L+GI VGHL+YF ++VLPD + +D++KTP+  +D  G
Sbjct:    7 LGRVGQGPANPVKDWLESLPPVTRVWFVASFGTTCLISFGLVDPYRLLWSWPAVRHRFEVWRLITPYFFFGGFSFPFLINLYLLQQYSKGYEISPYNTGGGGDTADYIWMMFLGALMLCGVSEFMGQVAP----AQAMLYLVLYVWSRRNPTQQVSLYGFPVQAIMLPWALCAFNMVIGNSLLLPLMGIGVGHLYYFAIEVLPDAYGVDIVKTPRALIDACG 224          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH)

HSP 1 Score: 152 bits (383), Expect = 1.380e-40
Identity = 80/212 (37.74%), Postives = 123/212 (58.02%), Query Frame = 3
Query:  243 GNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDML 878
            G++ +  F S+P ++KV +V  + +   L   +       L WP V  KFH WRLFT  VF GP  +   +    +     RYE + FN G GG SAD+ ++LL   + +   L+L +     + +E L + I YVWSR+ P   ++ WG +  ALY+PW  +A+ +V+G ++   L+G+AVGHL+YFLV VLP  H +DL+KTP+  VD++
Sbjct:    5 GDTLQGWFSSVPLITKVFLVSTLITGAGLSFKMLDGGSLVLLWPYVQNKFHFWRLFTCFVFAGPFSFNFALHTLVLYENCKRYESNPFNTGAGGNSADFLWLLL---IAMTVLLVLAYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIV 213          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A7S2SNX6_9STRA (Derlin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.510e-40
Identity = 79/223 (35.43%), Postives = 131/223 (58.74%), Query Frame = 3
Query:  213 MPIGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNMGGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLG 881
            M  G    G GN+P+E F S+PP+++ L+V ++ +  +   G+ +P++  L W  VW+ F IWRL +  VF G   +  L++++ +  ++ RYE   FN G GG SAD+A+ML  G   +  +    F  P++   + + F I YVW+RKNP    S +  +  A Y+PWAM+A  +++G  +++ L+GIA GH++YFL    P     D++KTP   +++LG
Sbjct:    1 MMRGMGRVGDGNTPQEWFYSLPPITRSLLVAVLATTAACSFGIVSPFQLHLDWTRVWRGFEIWRLASNFVFFGTFSFPFLINLYLLVQYASRYEVSPFNTGAGGSSADFAWMLTIGCSLLAIASYF-FGLPFM--GQPMSFMIMYVWTRKNPDEMTSIFFFKFQAFYLPWAMLAFNLLIGNDIYLPLMGIAAGHVYYFLHYTAPAELGRDIIKTPTFMIELLG 220          
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Match: A0A0P0YV31_9STRA (Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV31_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.510e-39
Identity = 85/230 (36.96%), Postives = 131/230 (56.96%), Query Frame = 3
Query:  213 MPIGFVNG-GGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFALSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDG-FNMGGGGGSADYAYMLLFGF--VFIEASLLLLFYQPYLIFTEALRFYICYVWSRKNPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLVDVLPDLHDIDLLKTPQIFVDMLGWGR 890
            MP+  V G G    P++ F+S+P +++      V   L+   G+  PY    SW  +  +  +WR  T   F GP  +  LM ++ +  FS +YE  G FN G GGG+ADYA+ LL G   V +   LLL F +   +F   L +Y+ Y+WS++NP    + WGI + A+Y+P+A +A  V  G S    + G++VGH++YFLVDV+P ++  DLL+TPQ  ++  G G+
Sbjct:    1 MPVQNVAGVGDAAGPDQWFKSLPIITQYWFGATVVVTLAANFGIINPYLLFWSWNDIKSRLELWRFLTPFCFAGPFDFSTLMVVYLLVQFSKQYEVGGPFNTGAGGGTADYAFCLLLGAGSVLVTYPLLLGFVRLAPVFCRTLIYYVLYIWSKRNPTAQANIWGIPMAAIYLPFAYLAFNVFTGNSYMDLIHGMSVGHVYYFLVDVVPMVYGKDLLRTPQFLINYFGTGQ 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT6_ECTSI1.200e-14474.31Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KW67_9PHAE2.660e-9580.10Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A835YYA5_9STRA3.080e-7450.55Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2XX42_9STRA2.100e-5139.29Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A6H5KUK6_9PHAE5.530e-4980.85Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A7S0SWB6_9STRA4.720e-4736.50Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 Rep... [more]
A0A8J2WZQ4_9STRA2.520e-4136.04Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A482RVM1_9ARCH1.380e-4037.74Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2SNX6_9STRA2.510e-4035.43Derlin n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
A0A0P0YV31_9STRA3.510e-3936.96Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:196605..199416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.6
Seed ortholog evalue5.6e-115
Seed eggNOG ortholog2880.D7FNT6
Preferred nameDER1
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDerlin
Ec32 orthologEc-12_003430.1
Exons4
Model size1046
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1636.1prot_P-fluviatile_contig13.1636.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 196605..198356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.588595-CDS-P-fluviatile_contig13:196604..1969111622815540.588595-CDS-P-fluviatile_contig13:196604..196911Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 196605..196911 -
1693562184.6878645-CDS-P-fluviatile_contig13:196604..1969111693562184.6878645-CDS-P-fluviatile_contig13:196604..196911Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 196605..196911 -
1622815540.6031845-CDS-P-fluviatile_contig13:197331..1975831622815540.6031845-CDS-P-fluviatile_contig13:197331..197583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 197332..197583 -
1693562184.7045655-CDS-P-fluviatile_contig13:197331..1975831693562184.7045655-CDS-P-fluviatile_contig13:197331..197583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 197332..197583 -
1622815540.6162663-CDS-P-fluviatile_contig13:198081..1983561622815540.6162663-CDS-P-fluviatile_contig13:198081..198356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 198082..198356 -
1693562184.7151995-CDS-P-fluviatile_contig13:198081..1983561693562184.7151995-CDS-P-fluviatile_contig13:198081..198356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 198082..198356 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.6267776-UTR-P-fluviatile_contig13:198356..1984581622815540.6267776-UTR-P-fluviatile_contig13:198356..198458Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 198357..198458 -
1693562184.7280304-UTR-P-fluviatile_contig13:198356..1984581693562184.7280304-UTR-P-fluviatile_contig13:198356..198458Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 198357..198458 -
1622815540.6360204-UTR-P-fluviatile_contig13:199306..1994161622815540.6360204-UTR-P-fluviatile_contig13:199306..199416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 199307..199416 -
1693562184.7364657-UTR-P-fluviatile_contig13:199306..1994161693562184.7364657-UTR-P-fluviatile_contig13:199306..199416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 199307..199416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1636.1

>prot_P-fluviatile_contig13.1636.1 ID=prot_P-fluviatile_contig13.1636.1|Name=mRNA_P-fluviatile_contig13.1636.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=278bp
MPIGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGSMLSLVVGLFTPYEFA
LSWPLVWKKFHIWRLFTAGVFPGPPGYGALMSIFSIGMFSIRYEQDGFNM
GGGGGSADYAYMLLFGFVFIEASLLLLFYQPYLIFTEALRFYICYVWSRK
NPGMSVSFWGIQINALYVPWAMVAMGVVLGASVFMALLGIAVGHLFYFLV
DVLPDLHDIDLLKTPQIFVDMLGWGREGSGVTMQRPGGAGAGAAGMPAPG
SAQPLRGFPRPGGGRADWGTGRTLGSS*
back to top

mRNA from alignment at P-fluviatile_contig13:196605..199416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1636.1 ID=mRNA_P-fluviatile_contig13.1636.1|Name=mRNA_P-fluviatile_contig13.1636.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2812bp|location=Sequence derived from alignment at P-fluviatile_contig13:196605..199416- (Porterinema fluviatile SAG_2381)
ACTTGACGCGCAACGGTAGACTTGCAAGCAAGCCAGGGTAATCTACTCCG CTGGAAACATCCAAACAGAGGGCGGACAGTTGCTTGATTCGTTGCCCTTC GAAGAGCTTGGTGGGTGGATTTGGAGATTTTTCCTTCCATTAGGCGAAAG ACGTTCACCGTTTCGTTTGCAGCTGCCGACGAGACACGTGTCCTGTGTCA AAGTGGCAACGGCCACGAGTAGAATACACGTAAAGTTGGAGGTTGCGACC CGTTTTTTTCGAGGGTCTTTGCCATTGCTCTCGCGAAGGGGATTGGATTG ATGTGCACTTGAAATGTGTGAAAAACGTCGTCGGAGAACGCGGACGGTTT CAATCGCTGTGTGTTACTGCAATTCGACCCACAATGTGTAAGGAGTGTGT AGACGACGCCGGCCGCAACGTTCGGCCCAAAGGCAGGCAACAAGATAGTG GGAGCGTTTTATGTTCGTGCCAGGCGCCAAAGGAGATACATTGTTTGTTA ACGTAATCCTTGTAGCCCAAAAGCTGGCGCAAATATCATGCCTTCGGCGT TGGAGGCGACGGCTTTACTCGCGACGGCTCAGCCCACACCCCACGTGAAT GTCCTTCGCCTGAAACTTGCGCTGGGGTCCGTGTTCAGAGTTTTCGATAG CAGCAGTATGTTCCGCTGCATTATTCGAGGGCGCCCGCAGAGAAGACTTG ATCCACACTCCCGACATCTTGGGCCACCCTCGTGCCCGCCACATGGATCC CCCAAATAGATGTCGTGTAGCAGTTGCTCGCACTGATAAAACACTCGCCG TTCCTTCGCAATTGGGTCGATGTTCCCTCTCTGACCGCGGATTTGTTCAC CCGTCCAACCTGGCTTCGTTTGGTGCAATCTCGTAGGAGCTTCATAGCTC CCGGAAATTGCGCGTTTGACACAAGCGGAATCTCTGCCCTTTTCAATCCC CTCTCCAGTACACAATCCAGGGCAAAAGTCGGACCTTCTCCACACACGCA CACACCAAATTCGGACAACGACACGGACGGATTGCATAAAAGCAAAAACA AACGAAAGCAATGCCTATCGGGTTCGTCAACGGCGGCGGTGGCAACAGCC CCGAGGAACTCTTCCGCAGCATCCCGCCAGTCTCGAAGGTGCTGATCGTC GGGATGGTGGGCTCGATGCTCTCGCTTGTTGTCGGCCTCTTCACCCCCTA CGAGTTCGCGCTTTCGTGGCCGCTGGTCTGGAAGAAGTTCCACATATGGC GGCTCTTCACCGCAGGCGTGTTCCCGGGGCCGCCGGGCTACGGCGCACTT ATGTCGATATTCTCGATAGGAATGTTTTCGATAAGGTGAGAATCGAGATG ATGCATGGTGGATGGGTGGTTGGATGGATGGATGGAAGCGATGAACTGCG TGAGGCGGGGGTAAAAGCTGGTAGCCTCGGCGGTTTTTTATGGCATTCTT TCGTTTGGGGTTGGTTCTGGTTTTGGTTTGTTTGACTTGATGTCCAGGGG CGATACATTCGCCGCCGCTCGCTTCTGTAACGAGACGTGTTCAACAAGAA TGACGGTTGGATCTGGAGAATGCCTGGAATGCGAAAAGATGCTCCACTTG TCGCCGAAAGGCTGTGTAGCGGTGGCGGGGACGCGTGCTTTTCATTCGTT TTACCCCATTGTCACCGACCCGCAAGGGTGCAAAGCGGCCAGATGCAGCT GCCCAAATAGAAGCAGATGGGTGATGTTTTTTTTTTCTGTCCCTGCATCT CAACCAGGGTTCGTCGCCTGGGTTGATTGTTGTCGATTCGACCGGACGTT AGATGCCGACTCCGTTCGTTCGATTTGCTGCAGGTACGAGCAGGATGGGT TCAACATGGGCGGCGGGGGCGGGAGCGCGGACTACGCCTACATGCTCCTG TTTGGCTTCGTGTTCATCGAGGCCTCGCTGCTCCTCCTCTTCTACCAGCC CTACCTGATCTTCACCGAAGCCCTCAGGTTTTACATCTGCTACGTCTGGA GCCGAAAAAACCCCGGCATGTCCGTCAGCTTCTGGGGGATACAAATCAAT GCCCTCTACGTTCCCTGGGCCATGGTCGCAATGGGGTGAGGAACCTCCCA CTCTCGGCTCACGTGTGAACACGCACCGACTTTTCACAGGCACGATGATG CTGCACGAAAGGCCTCGGGACGACAGACCTCCCTCGGGATCTCCATGACG GTAGCTCTTTCCTGCCAAACGCCCAAGCGCGTCATGAGGAGTTTACTCGG AGTACTCGTACGCTGGAATTCCCCACCCGCCTGTGCCTGTTACTGTTTCT TCCAGCGGTAGTCTTGGCTCATGTTTCAACTTGCCACGAGAAGCTTTGGC TGGTATTTCTCCCGGGGTTCAATCTTCCATCTTTGCCCCACGGTTTTCAC ACGTTGATGACTTTTCCATCCTCATTTCTCGATATTTGACAAAAGCATTC TGCAAACCAACCGCGGCCGTGCCGATCTCCCGTGCGCATTCTCTCGCGCA TGTAGCGTGGTACTCGGCGCGAGCGTCTTCATGGCCCTCCTAGGCATCGC CGTGGGCCACCTCTTCTACTTCCTCGTCGACGTCCTGCCGGACCTCCACG ACATCGACCTGCTCAAGACCCCCCAGATCTTCGTCGACATGCTGGGCTGG GGTCGAGAGGGGTCGGGCGTCACCATGCAGAGACCCGGCGGGGCGGGGGC CGGGGCCGCGGGCATGCCCGCACCGGGCAGCGCACAGCCACTGCGAGGCT TCCCGCGTCCTGGGGGGGGGCGGGCGGATTGGGGAACTGGTCGGACGTTG GGGTCGTCATGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:196605..199416-

>mRNA_P-fluviatile_contig13.1636.1 ID=mRNA_P-fluviatile_contig13.1636.1|Name=mRNA_P-fluviatile_contig13.1636.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1668bp|location=Sequence derived from alignment at P-fluviatile_contig13:196605..199416- (Porterinema fluviatile SAG_2381)
ATGCCTATCGGGTTCGTCAACGGCGGCGGTGGCAACAGCCCCGAGGAACT
CTTCCGCAGCATCCCGCCAGTCTCGAAGGTGCTGATCGTCGGGATGGTGG
GCTCGATGCTCTCGCTTGTTGTCGGCCTCTTCACCCCCTACGAGTTCGCG
CTTTCGTGGCCGCTGGTCTGGAAGAAGTTCCACATATGGCGGCTCTTCAC
CGCAGGCGTGTTCCCGGGGCCGCCGGGCTACGGCGCACTTATGTCGATAT
TCTCGATAGGAATGTTTTCGATAAGATGCCTATCGGGTTCGTCAACGGCG
GCGGTGGCAACAGCCCCGAGGAACTCTTCCGCAGCATCCCGCCAGTCTCG
AAGGTGCTGATCGTCGGGATGGTGGGCTCGATGCTCTCGCTTGTTGTCGG
CCTCTTCACCCCCTACGAGTTCGCGCTTTCGTGGCCGCTGGTCTGGAAGA
AGTTCCACATATGGCGGCTCTTCACCGCAGGCGTGTTCCCGGGGCCGCCG
GGCTACGGCGCACTTATGTCGATATTCTCGATAGGAATGTTTTCGATAAG
GTACGAGCAGGATGGGTTCAACATGGGCGGCGGGGGCGGGAGCGCGGACT
ACGCCTACATGCTCCTGTTTGGCTTCGTGTTCATCGAGGCCTCGCTGCTC
CTCCTCTTCTACCAGCCCTACCTGATCTTCACCGAAGCCCTCAGGTTTTA
CATCTGCTACGTCTGGAGCCGAAAAAACCCCGGCATGTCCGTCAGCTTCT
GGGGGATACAAATCAATGCCCTCTACGTTCCCTGGGCCATGGTCGCAATG
GGGTACGAGCAGGATGGGTTCAACATGGGCGGCGGGGGCGGGAGCGCGGA
CTACGCCTACATGCTCCTGTTTGGCTTCGTGTTCATCGAGGCCTCGCTGC
TCCTCCTCTTCTACCAGCCCTACCTGATCTTCACCGAAGCCCTCAGGTTT
TACATCTGCTACGTCTGGAGCCGAAAAAACCCCGGCATGTCCGTCAGCTT
CTGGGGGATACAAATCAATGCCCTCTACGTTCCCTGGGCCATGGTCGCAA
TGGGCGTGGTACTCGGCGCGAGCGTCTTCATGGCCCTCCTAGGCATCGCC
GTGGGCCACCTCTTCTACTTCCTCGTCGACGTCCTGCCGGACCTCCACGA
CATCGACCTGCTCAAGACCCCCCAGATCTTCGTCGACATGCTGGGCTGGG
GTCGAGAGGGGTCGGGCGTCACCATGCAGAGACCCGGCGGGGCGGGGGCC
GGGGCCGCGGGCATGCCCGCACCGGGCAGCGCACAGCCACTGCGAGGCTT
CCCGCGTCCTGGGGGGGGGCGGGCGGATTGGGGAACTGGTCGGACGTTGG
GGTCGTCATGACGTGGTACTCGGCGCGAGCGTCTTCATGGCCCTCCTAGG
CATCGCCGTGGGCCACCTCTTCTACTTCCTCGTCGACGTCCTGCCGGACC
TCCACGACATCGACCTGCTCAAGACCCCCCAGATCTTCGTCGACATGCTG
GGCTGGGGTCGAGAGGGGTCGGGCGTCACCATGCAGAGACCCGGCGGGGC
GGGGGCCGGGGCCGCGGGCATGCCCGCACCGGGCAGCGCACAGCCACTGC
GAGGCTTCCCGCGTCCTGGGGGGGGGCGGGCGGATTGGGGAACTGGTCGG
ACGTTGGGGTCGTCATGA
back to top