mRNA_P-fluviatile_contig13.1635.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1635.1
Unique NamemRNA_P-fluviatile_contig13.1635.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 9.810e-119
Identity = 189/224 (84.38%), Postives = 207/224 (92.41%), Query Frame = 1 
Query: 1231 SDESKQRHPAAGSLLRTLTGPQVSVALGIGILMAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSL 1902
            SDE +QR P AGSL+R LTGP VS+ +G+GIL+AVLANRIATP LVDSQARTDILGVIASGGL+TNGVYLLDL V+EAEEVTLVG+FVQE++D+L P ARRDLQWLGESLLLVSPATSMLVY +GKTLARVGVMGES  ++D PILRKCI +G+ GREQYLAALQTLPGKVEFDYLPENCQAVLMLPVL GSAVVVVGTNRARAFTPKDIVWMKGLC+QAALSL
Sbjct:   63 SDEVEQRSPVAGSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCISEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 286
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BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.280e-58
Identity = 116/219 (52.97%), Postives = 151/219 (68.95%), Query Frame = 1 
Query: 1261 AGSLLRTLTGPQVSVALGIGILMAVLANRIA-TPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPAT-SMLVYMEGKTLARVGVMGESPVMQDT--PILRKCIRDG-QGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSL 1902
            +G ++R LTG   S+A G+  L A+L NR+A TP L DSQARTDIL +IASGGLI NGVYLLDL+++ A+ VTLVG+F QE    L+ E    L+WL ESL+L  PAT S+LV+++G+T AR GVMG      D   PI+ K +R+  +  +E YL  LQ LPGK+EF YLP NCQ V++  VLGG   VVVG ++ARA+TP+DI WMK   ++A   L
Sbjct:   84 SGGIIRQLTGSNFSLAAGLLGLAAILINRLALTPYLYDSQARTDILALIASGGLIMNGVYLLDLDIKVADSVTLVGTFEQELDPTLSAEQAAQLRWLCESLILAKPATASVLVHVDGRTRARYGVMGGGATTVDAGAPIMAKALREAARSDKEVYLPVLQNLPGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302
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BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: L8LI26_9CHRO (Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LI26_9CHRO)

HSP 1 Score: 137 bits (345), Expect = 4.130e-33
Identity = 79/213 (37.09%), Postives = 126/213 (59.15%), Query Frame = 1 
Query: 1270 LLRTLTGPQVSVALGIGILMAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLSR 1908
            +LR L  P VS  LG  +L   L NR++T  L +SQAR+D+LGVI S  LI  G+    +  R  E VTL+G    E   +L    + +L W    LL  +   S+++Y EG+ L R G++G++  ++  PI+ +C++     +  YL +L+  PG +EFDYLPEN Q V+  P LG   V+++G N  R++T +D  W++G+ D+ A++L++
Sbjct:    9 ILRLL--PLVSGGLGGALL---LFNRLSTLELTNSQARSDVLGVILSALLILVGLLWQQIQSRNPESVTLIGEEGFELDPQLPDSVKTELAWASHLLLTNTVTRSVVIYYEGRVLLRRGILGKTAQVKPGPIIHRCLKTS---KPVYLVSLKLYPGGIEFDYLPENTQGVICQP-LGKEGVMILGANAPRSYTKQDETWIEGIADKLAITLAQ 212
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BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A838VUG8_9NOST (Cofactor assembly of complex C subunit B n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VUG8_9NOST)

HSP 1 Score: 137 bits (344), Expect = 5.780e-33
Identity = 76/195 (38.97%), Postives = 115/195 (58.97%), Query Frame = 1 
Query: 1327 MAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLSRQ 1911
            + +L NRI TP L DSQARTD LGVI    LI  G+    +  R  + V L+G    E + EL+   + +L W    LL  +   S++VY +GK L R G++G +P ++  PIL++ +   +  R  YL  L+  PG+ EFDYLPEN Q V+  P LG   V+++G +  R++T +D  W+ G+ D+ AL+LS++
Sbjct:   23 LLLLVNRILTPNLTDSQARTDALGVIVCAVLILTGLLWQQVQSRTPDTVKLIGEEGFELTAELSTTVKTELAWASHLLLTNTVTRSLVVYYQGKVLLRRGILGINPEVKPGPILKRVL---EIHRPVYLVDLKVYPGRTEFDYLPENTQGVICQP-LGNQGVLILGADAPRSYTKQDENWIAGIADKLALTLSQE 213
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A6M0EQ64_9CYAN (Cofactor assembly of complex C subunit B n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6M0EQ64_9CYAN)

HSP 1 Score: 134 bits (337), Expect = 5.770e-32
Identity = 87/217 (40.09%), Postives = 124/217 (57.14%), Query Frame = 1 
Query: 1270 LLRTLTGPQVSVALGIGILMAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLSRQPCE 1920
            LLR L  P V   LG G+L+  L NR+ TP L D QAR+D LGV+ S  LI  G+    +  R  E V L+G    EFSD L  E + +L W    LL  +   S++V+ +GK L R G++G +  ++   IL + +   +  +  YL AL   PGK+EFDYLPEN Q V+  P LG   V+++G N  R++T +D  W++G+ D+ A +LSR   E
Sbjct:    9 LLRQL--PLVVGGLG-GLLL--LINRLLTPQLTDYQARSDALGVLLSAILILTGLLWQQVQPRTPEVVDLMGQQGFEFSDGLDDELKTELAWASHLLLTNTATRSLVVWYQGKVLLRRGILGVNSQVKPGAILSRVM---EKQKPVYLVALGLYPGKIEFDYLPENTQGVICQP-LGNQGVLILGANAPRSYTKQDENWIEGIADKLANTLSRYELE 216
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 132 bits (333), Expect = 1.930e-31
Identity = 72/192 (37.50%), Postives = 112/192 (58.33%), Query Frame = 1 
Query: 1327 MAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSL 1902
            + +L NR+ T  L DSQAR+D LGVI    LI  G+    +  +  + VTL+G    E   EL   A+ +L W    L+  +   S++VY  GKT+ R GV+G++  ++   I+++ +  G   +  YL  L   PGKVEFDYLPEN Q V+  P+ G   V+++G N  R++T +D VW++G+ D+ A++L
Sbjct:   23 LLLLVNRLLTTQLTDSQARSDALGVIEGAVLILVGLLWQQIQAKPPDTVTLIGETGLELDSELPQTAKLELAWASHLLITNTVTRSLVVYYAGKTILRRGVLGKNSQVKPGAIVQRVLTQG---KPVYLVNLNLYPGKVEFDYLPENTQGVICQPI-GSLGVLILGANAPRSYTKQDEVWIEGIADKLAVTL 210
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BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: UPI0019F7C38E (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019F7C38E)

HSP 1 Score: 132 bits (332), Expect = 2.480e-31
Identity = 72/190 (37.89%), Postives = 111/190 (58.42%), Query Frame = 1 
Query: 1336 LANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLS 1905
            L NR+ T  + DSQAR+D LGVI    LI  G+    +  +  + VTL+G    EF+ EL+  A+ +L W    LL  +   S++VY +G T+ R GV+G++  ++   IL + +      +  YL  L   PGKVEFDYLPEN Q V+  P+ G   V+++G N  R++T KD  W++G+ D+ A++L+
Sbjct:   26 LINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQAKTPDTVTLIGETGLEFASELSEVAKTELAWASHLLLTNTVTRSLVVYYDGITMLRRGVLGKNSQVKPGAILERALSKA---KPVYLVNLNLYPGKVEFDYLPENTQGVICQPI-GNKGVLILGANAPRSYTKKDEQWIEGIADKLAVTLN 211
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A6P0MIA3_9CYAN (Cofactor assembly of complex C subunit B n=1 Tax=Symploca sp. SIO2C1 TaxID=2607783 RepID=A0A6P0MIA3_9CYAN)

HSP 1 Score: 132 bits (332), Expect = 3.010e-31
Identity = 76/199 (38.19%), Postives = 117/199 (58.79%), Query Frame = 1 
Query: 1312 GIGILMAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLSR 1908
            G+G ++ VL NR+ TP L DSQAR+D+LGVI S  LI  G+    +  R  + V LVG    E +  L  E + +L W    LL  +   S++V+ +GK L R G++G +P ++   IL+   R  Q  +  YL  L+  PG++EFDYLPEN Q V+  P+ G    +++G N  R++T +D  W++G+ D+ A +LS+
Sbjct:   19 GLGGVLLVL-NRLLTPQLTDSQARSDVLGVILSAVLILTGLLWQQVQPRSPDAVDLVGEEGFELAPALPTEVKTELAWASHLLLTNTATRSLVVFYQGKVLLRRGILGNNPEVKPGAILQ---RVQQKQKAVYLVNLKIYPGRIEFDYLPENTQGVICQPI-GNQGALILGANAPRSYTKQDENWVEGIADKLANTLSQ 212
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: A0A1J1LJ45_9CYAN (Uncharacterized protein n=5 Tax=Planktothrix TaxID=54304 RepID=A0A1J1LJ45_9CYAN)

HSP 1 Score: 132 bits (331), Expect = 5.090e-31
Identity = 73/190 (38.42%), Postives = 110/190 (57.89%), Query Frame = 1 
Query: 1336 LANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLS 1905
            L NR+ TP L+DSQAR+D LGVI S  LI  G+    +  R  + V L+G    E   +L    + +L W    LL  +   S++VY +G+ L R GV+G +P +   PIL++ +   +  +  YL  L   PG++EFDYLPEN Q V+  P LG   V+++G N  R++T +D  W++G+ D+ A +LS
Sbjct:   35 LINRVLTPELLDSQARSDALGVILSAVLILTGLLWQQIQPRSPDAVELIGEQGFELKQDLPEFVKTELAWASHLLLTNTVTRSVVVYYQGEVLLRRGVLGNNPTVNPGPILQRVL---EKQKPVYLVNLALYPGRIEFDYLPENTQGVICQP-LGNQGVLILGANAPRSYTKQDENWVEGIGDKLANTLS 220
[Close]
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Match: K9WAP0_9CYAN (Uncharacterized protein n=3 Tax=Oscillatoriales TaxID=1150 RepID=K9WAP0_9CYAN)

HSP 1 Score: 131 bits (330), Expect = 5.580e-31
Identity = 74/191 (38.74%), Postives = 110/191 (57.59%), Query Frame = 1 
Query: 1336 LANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNVREAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEGKTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLSR 1908
            L NR+ TP L +SQAR+D LGVI S  LI  G+    +  R  E V L+G    E + EL  E + +L W    LL  +   S++V+ +GK L R GV+G +P ++   IL + I   +  +  YL  L+  PG++EFDYLPEN Q V+  P LG    +++  N  R++T +D  W++G+ D+ A +LSR
Sbjct:   26 LTNRLLTPQLTESQARSDALGVILSAVLILTGLLWQQVQPRSPEAVNLIGEEGLELAPELPEEVKTELAWASHLLLTNTVTRSLVVFYQGKILLRRGVLGANPEVKPGAILSRVI---EKQKPVYLVDLKLYPGRIEFDYLPENTQGVICQP-LGDQGALILAANAPRSYTKQDENWIEGIADKLANTLSR 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI9.810e-11984.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA7.280e-5852.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8LI26_9CHRO4.130e-3337.09Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC... [more]
A0A838VUG8_9NOST5.780e-3338.97Cofactor assembly of complex C subunit B n=1 Tax=N... [more]
A0A6M0EQ64_9CYAN5.770e-3240.09Cofactor assembly of complex C subunit B n=4 Tax=u... [more]
A0A1Z4RSL5_9CHRO1.930e-3137.50Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
UPI0019F7C38E2.480e-3137.89Cofactor assembly of complex C subunit B n=1 Tax=P... [more]
A0A6P0MIA3_9CYAN3.010e-3138.19Cofactor assembly of complex C subunit B n=1 Tax=S... [more]
A0A1J1LJ45_9CYAN5.090e-3138.42Uncharacterized protein n=5 Tax=Planktothrix TaxID... [more]
K9WAP0_9CYAN5.580e-3138.74Uncharacterized protein n=3 Tax=Oscillatoriales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:185067..190387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue3.3e-100
Seed eggNOG ortholog2880.D7FNT4
Preferred nameCCB4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
EggNOG OGs28KGG@1,2QSXP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF2930
Ec32 orthologEc-12_003460.1
Exons5
Model size2691
Cds size918
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.4914505-UTR-P-fluviatile_contig13:185066..1858341622815540.4914505-UTR-P-fluviatile_contig13:185066..185834Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 185067..185834 -
1693562184.086282-UTR-P-fluviatile_contig13:185066..1858341693562184.086282-UTR-P-fluviatile_contig13:185066..185834Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 185067..185834 -
1622815540.5561574-UTR-P-fluviatile_contig13:189382..1903871622815540.5561574-UTR-P-fluviatile_contig13:189382..190387Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 189383..190387 -
1693562184.668278-UTR-P-fluviatile_contig13:189382..1903871693562184.668278-UTR-P-fluviatile_contig13:189382..190387Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 189383..190387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.5052633-CDS-P-fluviatile_contig13:185834..1860321622815540.5052633-CDS-P-fluviatile_contig13:185834..186032Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 185835..186032 -
1693562184.095732-CDS-P-fluviatile_contig13:185834..1860321693562184.095732-CDS-P-fluviatile_contig13:185834..186032Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 185835..186032 -
1622815540.5150216-CDS-P-fluviatile_contig13:187014..1871731622815540.5150216-CDS-P-fluviatile_contig13:187014..187173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 187015..187173 -
1693562184.105095-CDS-P-fluviatile_contig13:187014..1871731693562184.105095-CDS-P-fluviatile_contig13:187014..187173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 187015..187173 -
1622815540.5245593-CDS-P-fluviatile_contig13:187610..1877331622815540.5245593-CDS-P-fluviatile_contig13:187610..187733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 187611..187733 -
1693562184.1209214-CDS-P-fluviatile_contig13:187610..1877331693562184.1209214-CDS-P-fluviatile_contig13:187610..187733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 187611..187733 -
1622815540.5355253-CDS-P-fluviatile_contig13:188244..1884811622815540.5355253-CDS-P-fluviatile_contig13:188244..188481Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 188245..188481 -
1693562184.1322489-CDS-P-fluviatile_contig13:188244..1884811693562184.1322489-CDS-P-fluviatile_contig13:188244..188481Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 188245..188481 -
1622815540.5462315-CDS-P-fluviatile_contig13:189181..1893821622815540.5462315-CDS-P-fluviatile_contig13:189181..189382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 189182..189382 -
1693562184.1408584-CDS-P-fluviatile_contig13:189181..1893821693562184.1408584-CDS-P-fluviatile_contig13:189181..189382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 189182..189382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1635.1prot_P-fluviatile_contig13.1635.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 185835..189382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1635.1

>prot_P-fluviatile_contig13.1635.1 ID=prot_P-fluviatile_contig13.1635.1|Name=mRNA_P-fluviatile_contig13.1635.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp
MVAKLCWAVTLVVHLTLVISFGSAPPPVSPTWQSTSRRCQFKTTASVHNP
GSQACAPPTARSTTSILVAPDHIEGSDESKQRHPAAGSLLRTLTGPQVSV
ALGIGILMAVLANRIATPVLVDSQARTDILGVIASGGLITNGVYLLDLNV
REAEEVTLVGSFVQEFSDELTPEARRDLQWLGESLLLVSPATSMLVYMEG
KTLARVGVMGESPVMQDTPILRKCIRDGQGGREQYLAALQTLPGKVEFDY
LPENCQAVLMLPVLGGSAVVVVGTNRARAFTPKDIVWMKGLCDQAALSLS
RQPCE*
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mRNA from alignment at P-fluviatile_contig13:185067..190387-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1635.1 ID=mRNA_P-fluviatile_contig13.1635.1|Name=mRNA_P-fluviatile_contig13.1635.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5321bp|location=Sequence derived from alignment at P-fluviatile_contig13:185067..190387- (Porterinema fluviatile SAG_2381)
TTTGTAAACCCGTGTGGGCCTCAAACCGTCTCTCATCGCAGGTCTGGATA
CAGCCTACAATTCTGTTACGATCCTGTCTATCTGTGAGCACGAGGATTGG
CTTGGCTGTGATGTACATCTCATGCAGAACCCCTTCCCCTGTGAAACGAA
ATGTTGTGCAAAACGAGCTTCCACAGTCCCATTCAGGAGCAGTTAAACTC
TAGGGCGATGCACATCCATATGCCACGCGAGAGCCGTGGCAAGTAGGTGT
GCGCTGCCTACAGCCATGCGGTAGGTTCGAGATCTCGATCATCTAGGAGA
ACTACCTTTGACAGAAGGTGACAGTCTAGGTCAGCTTTCACTCTCACGTC
ATCATGGCTCGAAGTAGAGGGCGGCCTAGTCCTGGATTCCCACTTGACAA
GAGTATACACACACTGGTATGGTTTGGTGCTGCAGGGCAGAGGGGTCACG
AAGTTGTTGGCTTGCTGGGTGTGTGAACGCGCTCCTGGTTGAACAGGGGG
GAGCCAGATAATTGGCTTTCCACGGATGCGAATGACGCTCTGGGCGGGCG
TTGTATTTTCCGATAATGCGTCTTTGGCCGGCGGTGAGGGATACAGACAG
TGAGCAGTGAATATTTTTTTTAATTTCGAGCGAGCGCAGGTGATACACGA
CGATCTCCTGTGGTAGCAAAACCTCTACAGAGTAGAACCATTCGTGCGTT
ACCAACCTACCAGTTCGTGTGCGCTAGCGTTCCACTTCCACACCTTCATC
ACCACGTTCACGGTGCCATTCGGTGCGAGGCTGTTCCATTTCATTAGGGA
ATACGGAGGTACTTTCCGCCCTCTCCCCTCCGCAATTGGCTGATAATTAA
GGTCTTCGGGAGTACAGGGAGAGAGGCGCGGAGACAGCCCCACATCGAAT
CCCGCGCTCCCCACCCCCCCCCCTCTCCACTGGCGCGCGCGCATGTCGTA
CCTCTGAATATGCCAAACAGGGTAGAGACACATCATCTCCAAACACACGT
CTTTCATGGTGGCCAAACTCTGCTGGGCAGTAACCTTAGTGGTGCATTTG
ACCCTGGTAATATCGTTCGGGTCAGCGCCTCCGCCGGTCAGTCCTACCTG
GCAATCCACGTCGCGCCGATGCCAGTTCAAAACAACAGCAAGTGTGCACA
ATCCCGGCAGCCAGGCCTGTGCACCTCCGACGGCACGAAGCACAACGAGC
ATACTGGTGGGTAGACTGCATGCTTCATCCATTTGTTTATGCTGAAATTT
CTGGTGCACACTGCTGATGGGCCCATCTTTGCACTTATTGAGCAGTCCTG
GTCAAATGCGCATGTGCTCTGGCTGTATCGAGGGACAAACTTGCACTGCT
CTACTGCGCTGTTGTGCAATCAATTGTGGGACAGTTGATGCTTGCTGTAG
TTGGAGGTCGGGTGAAAGCAGTCGAGACACGTTGCCTCCAACCCTCTGTC
TCTGCTGCTAATTTACACATTTGGCGTGTCACATATTTCCAGGAGCACCA
TTTGAGTGATGAAGGGGTGTATCGTTGACAGACATCTATCGCGCTAGTAG
CCCGTGTCGACGACACGAGAGGACGTATGGCACCCTTCGTACGCGGCCAC
GTTCGAGATGTTTCAGTCGGCTCCTTGCGCGGCTTGACCTCGCGGAGTCG
CGAGGAGAGCGGCACCAGCTTTGTTTTCTTCCGCGGAGGCCTTGCAATGG
CAAAGCGCCGGACAGGTTTCGGGCGAGGCTGTAAGGAGAGTCCGGGCGCG
AAGAAAGCGTCTGAGCGGCCAGTTTGGCGGTTTTGCTCCCGCTGCGGCGT
GAAGTACGCAATGGACATCGCAGGCGACCTCACATTGCCAACGCTGTGCC
TCTTATGTCCATGGAACTCCGCTCGTTTGCGGTCTCCCCTCTCGAAACTC
TCGCAGGTGGCCCCCGACCACATCGAAGGCAGCGATGAAAGCAAGCAACG
TCACCCGGCAGCTGGAAGCCTCCTCCGCACGCTCACGGGCCCCCAGGTGT
CGGTCGCACTCGGCATCGGGATTCTAATGGCCGTGCTCGCCAACAGAATC
GCCACGCCCGTGCTGGTCGACTCGCAAGCCCGCACGGACATTCTCGGGGT
GATTGCGAGCGGGGGCTTGATAACAAATGGCGTCTACTTGCTGGTACGTG
CGTAGTTGCGTGGTTTTGTGCCACACCGGTGCATTTCTGTGCTGATGCCC
AGGTTTTTTGGTAAAAGCTGGAGGCGCGGCTTGCGTTTTTCTTTGGATTG
TGGAGGTGAACGTCGATACTATGTTTCGCTAAGACTGGTATGCCTTTGTG
AAATGCGCAGCTACAACCGGAACATGCACGACATTGGAACCCTATTGGTT
CGCGCCAGCGATGAGCCAACCTGCGCAAATGTTTTGTATTGTTTTTGTTT
AATTTGGGCTTTGCTTGCACTTGAAGCTTATCATCTCGGCGTTTCCAGCA
GGGGTCATGCCGAACAGGAGACGGACGGCATGCACCCAACGTTGTCCGAG
GTTGTGGCCATAACTTTGATACACCGCATGACTAGACGGTTTACATTCAT
GTGCTACGTTCAATTTTCGATTATCGTGAATGTGGCGGTGCGAAGGAAAG
TCAGGAGCGGTTCGTTGAAAGTATGTACCCGGGCCGCGACCGGCTTGTCT
GCAGGATTTGAATGTGAGGGAAGCTGAGGAAGTTACACTGGTGGGATCGT
TCGTCCAGGAGTTCTCTGACGAGCTTACGCCGGAGGCGCGCAGAGATCTT
CAGTGGCTTGGCGAATCTTTGCTTTTGGTGAGTCGAAGAACGTTCATGTT
TTCGCTTGACAAAACTTTGCGCACAACTACTGTGCAAAAGAAGGAACAAA
GACAAACAGGTTTGTTGAAAAGTGATGCGTATCAACATGGGATTCTGCAA
AATGTTGGAGGACAAATGGTATAATGGTAAATACGTGCACTTTGCACTGA
TTGTCGCTTGGTGATGACGTGGTCGACGGAAGCCACGGCGAGTTGGGGCT
GCGCAACTATCGTCCTGTGGGGGTGGGATCTAAGACCCCTCCATGTCGCG
TCATGCACAGCAGTCGCTTAGTTTCGGACAATGGCTGGCTTATCGGGGTT
TCAATTGCAGGGTCGAAGAAGAAAAACGAGTCATCGTACCCCCAAACTAG
CTAGATGTTCATGGTTTTCGACCCCGCCGCCCCTTGCTTTGTGTATATGG
CGTCCGACCTGCAGGTATCGCCTGCAACATCAATGTTGGTCTACATGGAA
GGGAAGACCCTGGCCAGGGTTGGAGTGATGGGAGAGTCGCCGGTCATGCA
AGACACCCCAATTTTGAGAAAGTGTATTCGCGATGGACAGGGAGGGCGAG
AGCAATACCTGGCTGCTCTTCAGGTAACGTTTATGCTCGTGCCGTGGGTC
GTGGACAGCTCTGTCTCTTCGTCTTGCCATAACTTGGTTTGCGGACACTA
CCAAATTGTGCGCTCCGTTGTTCCATCCCTTGTTCGTCTTCAAATGGAAT
GTTTTAGCGCACTACCAAGCTGCAACCGTTTTGATCCACCGCTTTTCGCT
TGCTCGCATTTCACTTGATTCATTTATTGTGTGTGGAGCACAGACTCTAC
ATATTGTTCTGAGGCTCTGAAGTGGACTGATCCCCGTCTATCATGGCCGT
TGCGAGCATACTCGCGGTCGCCCGACATATCATACATGTGCGTTATGAGT
AGATGACAGGACGACATCGACCAAATCTTCAACATTTATCGGTCGCCCCG
GTGGTCTAGCTGGTATCCTCGTAACCTTCTAGCACCCAGGTCAAGGGTTC
AAATCTCGGCGAGAGTGGTTTTCTATCACTTTCGTACCTGGGAGTAGAAA
GCGGTGAAAAGCTGAAAGGCTTCGTGAGTACACAAAGGGTGACGAAGCGG
TCGACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGATAAAAATGAAGGC
AAGCACCGCAGGAGGAAGGCGGGGCAAAAAAGAAAAGGAAAAAGAATAAA
GCTCCCGCGTTTACCCCCCTCCCTCCTGTGTGATCACGGTTGGTTGCAGC
TGGACAGAAAAATACACTGAACAAGTATAGTCCTCTTAAATACGCTGCAA
AGTGTATTACACGCCTCGCCTTGATCGGAGGGACTGTCACCAATAAAGTG
ACGAAAAAACACACACACATTAGTCCAGGATGTCGTTTGAATCAGGATGG
ACACGGCCAACTTTTATGGCACACTGTTTGCCAAAACCTGTCCCATGACG
CTTGTCCTGTGTTGTCTGTGGCAACGAACGGGGTGCCCGCCCTCGTACCT
TCCCCGTCGCTCCCGTTTGTTTTGACCTCCTTTGCGTGTGTACGGCTGCA
CGCAGACGCTCCCGGGAAAGGTCGAGTTCGATTATCTCCCGGAAAATTGT
CAGGCGGTGTTAATGCTGCCCGTTCTCGGGGGGTCCGCTGTTGTTGTGGT
CGGGACTAACAGGGCGCGCGCGTTCACGCCCAAGGATATTGTTTGGATGA
AGGGGCTATGCGACCAGGCAGCCTTATCGTTGAGCAGGCAGCCGTGTGAA
TGAACAGCGTGAAGATAGACAGAAGAGTTTGATGAATGGAAATGGGAGCT
TGTTCTTTGTTTGGCGCCAGCAATAATCTGGTTTGTGCGCGTGCAATAAT
TTGGGCACGTGAGGAGTGTGCGTGCCGTGTTCGTAACCAAGGTTTGAAAC
CGTCACCTTCTCCTGAACATTTTCAGTTTCTTGGGAGTTAGAACCGCTGC
ACATGTCATTGCGCTCCGTTGGTTGTTTCCCCAGCCCGTCTTTTGAACAG
CTCCTAGCCGCAGCCATTCCCCCAGATCGCCATCTTTATTACCGTTTTCC
CTCTATCTGTGTCGTTACCGATGTCTTCCCTGTAGGAGCGAGCTAGAGCA
AAAAGGGAGGTGTTCCGCACGATGAGTTGATGATCTGTGTCCCGGGGCAT
TTCTGGTGTACAATAGGATGATTCCGACCTTCACAGCAGCATGCTTGTTT
TTTCAGGGAACTACAGGGTGGAAATCCTAGACCGAGTCCCAGCAAAAATT
GCAACGTCAATCTTGCATCATGAGCTGGAGCTTTTATGCTACGGTGTAGC
CCCTCGCGGGCATATGACTGGATGAGGCAGGGCATGTTCTGCTGTGATAT
GTAATACGCGCGGATGCAGAAATCCGGCCAGCTGTTGGCGCGGTGAGCGA
GTGTACATTGCTGTGCCGGGGTGCGGGGGGATGGCACACATCAACATCAA
CACACAACGCGAAAAAGTGTTCAATTTCCGCGCCGGCCCGCTCGTAAGTA
ATTTGCCTGCAAGAAATCGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:185067..190387-

>mRNA_P-fluviatile_contig13.1635.1 ID=mRNA_P-fluviatile_contig13.1635.1|Name=mRNA_P-fluviatile_contig13.1635.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig13:185067..190387- (Porterinema fluviatile SAG_2381)
ATGGTGGCCAAACTCTGCTGGGCAGTAACCTTAGTGGTGCATTTGACCCT
GGTAATATCGTTCGGGTCAGCGCCTCCGCCGGTCAGTCCTACCTGGCAAT
CCACGTCGCGCCGATGCCAGTTCAAAACAACAGCAAGTGTGCACAATCCC
GGCAGCCAGGCCTGTGCACCTCCGACGGCACGAAGCACAACGAGCATACT
GATGGTGGCCAAACTCTGCTGGGCAGTAACCTTAGTGGTGCATTTGACCC
TGGTAATATCGTTCGGGTCAGCGCCTCCGCCGGTCAGTCCTACCTGGCAA
TCCACGTCGCGCCGATGCCAGTTCAAAACAACAGCAAGTGTGCACAATCC
CGGCAGCCAGGCCTGTGCACCTCCGACGGCACGAAGCACAACGAGCATAC
TGGTGGCCCCCGACCACATCGAAGGCAGCGATGAAAGCAAGCAACGTCAC
CCGGCAGCTGGAAGCCTCCTCCGCACGCTCACGGGCCCCCAGGTGTCGGT
CGCACTCGGCATCGGGATTCTAATGGCCGTGCTCGCCAACAGAATCGCCA
CGCCCGTGCTGGTCGACTCGCAAGCCCGCACGGACATTCTCGGGGTGATT
GCGAGCGGGGGCTTGATAACAAATGGCGTCTACTTGCTGGTGGCCCCCGA
CCACATCGAAGGCAGCGATGAAAGCAAGCAACGTCACCCGGCAGCTGGAA
GCCTCCTCCGCACGCTCACGGGCCCCCAGGTGTCGGTCGCACTCGGCATC
GGGATTCTAATGGCCGTGCTCGCCAACAGAATCGCCACGCCCGTGCTGGT
CGACTCGCAAGCCCGCACGGACATTCTCGGGGTGATTGCGAGCGGGGGCT
TGATAACAAATGGCGTCTACTTGCTGGATTTGAATGTGAGGGAAGCTGAG
GAAGTTACACTGGTGGGATCGTTCGTCCAGGAGTTCTCTGACGAGCTTAC
GCCGGAGGCGCGCAGAGATCTTCAGTGGCTTGGCGAATCTTTGCTTTTGG
ATTTGAATGTGAGGGAAGCTGAGGAAGTTACACTGGTGGGATCGTTCGTC
CAGGAGTTCTCTGACGAGCTTACGCCGGAGGCGCGCAGAGATCTTCAGTG
GCTTGGCGAATCTTTGCTTTTGGTATCGCCTGCAACATCAATGTTGGTCT
ACATGGAAGGGAAGACCCTGGCCAGGGTTGGAGTGATGGGAGAGTCGCCG
GTCATGCAAGACACCCCAATTTTGAGAAAGTGTATTCGCGATGGACAGGG
AGGGCGAGAGCAATACCTGGCTGCTCTTCAGGTATCGCCTGCAACATCAA
TGTTGGTCTACATGGAAGGGAAGACCCTGGCCAGGGTTGGAGTGATGGGA
GAGTCGCCGGTCATGCAAGACACCCCAATTTTGAGAAAGTGTATTCGCGA
TGGACAGGGAGGGCGAGAGCAATACCTGGCTGCTCTTCAGACGCTCCCGG
GAAAGGTCGAGTTCGATTATCTCCCGGAAAATTGTCAGGCGGTGTTAATG
CTGCCCGTTCTCGGGGGGTCCGCTGTTGTTGTGGTCGGGACTAACAGGGC
GCGCGCGTTCACGCCCAAGGATATTGTTTGGATGAAGGGGCTATGCGACC
AGGCAGCCTTATCGTTGAGCAGGCAGCCGTGTGAATGAACGCTCCCGGGA
AAGGTCGAGTTCGATTATCTCCCGGAAAATTGTCAGGCGGTGTTAATGCT
GCCCGTTCTCGGGGGGTCCGCTGTTGTTGTGGTCGGGACTAACAGGGCGC
GCGCGTTCACGCCCAAGGATATTGTTTGGATGAAGGGGCTATGCGACCAG
GCAGCCTTATCGTTGAGCAGGCAGCCGTGTGAATGA
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