mRNA_P-fluviatile_contig13.1629.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1629.1
Unique NamemRNA_P-fluviatile_contig13.1629.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 5.420e-117
Identity = 219/252 (86.90%), Postives = 226/252 (89.68%), Query Frame = 1 
Query:   40 MGDVGQICHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQ--PPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------IGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPGGQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARKA 753
            MGDVG I HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAE+SMATNALRQMQGFPFFEKKMRIQFAK ESDVVTK+AGTYVPRDKRKLPSA+ +NGNG+HQ  P PAA     XXXXXXXXXXXXXXXXXXXXXXXXXXX            IG+VPHNILYATGLPPEITQVMLSKLFEQYPGF EARMAPGGQAFIEF DQMQAGIALNALNGFKLSAT+PLQLAFARKA
Sbjct:    1 MGDVGVINHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 216 bits (549), Expect = 3.250e-63
Identity = 124/240 (51.67%), Postives = 147/240 (61.25%), Query Frame = 1 
Query:   67 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGV----------HQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPG--GQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            TIY++NLNEKIKK +LKKSLHS+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPF+EK MRI FAK +SD V KR G Y P  KR+                       +P PAAV                                 NVPH IL+A  LP +  ++ML  LF+QY G+KE RM PG  G AFIEF D+MQAG AL  LNGFKL+    LQL++ARK
Sbjct:   11 TIYINNLNEKIKKDVLKKSLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFTAVQQVEQPVP----------------ANVPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 209 bits (533), Expect = 8.760e-61
Identity = 138/230 (60.00%), Postives = 172/230 (74.78%), Query Frame = 1 
Query:   67 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARM--APGGQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            TIY++NLNEKIKK  LKKSL++VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPF++K MRIQ+AK +SD V+K  GT+V R+KRK    +       HQ    A        XXXXXXXXXXXXXXXXXXXXXXXX    P+NIL+A  LP E   +M+  LF+Q+PGFKE RM  A  G AFIEF D+MQA +AL AL+ FK++ T+P+Q+++A+K
Sbjct:   10 TIYINNLNEKIKKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQAEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.680e-60
Identity = 116/230 (50.43%), Postives = 144/230 (62.61%), Query Frame = 1 
Query:   67 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPG--GQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            TIY++NLNEKIKK +LKKSLHS+FSQFGKI+ I ACRG+KL+GQAWVVF +++ ATNALRQMQGFPF+EK MRI F+K +SDVV KR GTY  R KRK P A   +       P A                                   N P+ IL+A GLP +  +++L  LF+QY GF E RM PG  G AF+EF D+MQAG A+  LNGFKL+    L L++A +
Sbjct:    4 TIYINNLNEKIKKEVLKKSLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKR-KRKAPPAPAPDAPAQPSAPFAQTTAAAGK--------------------------NNPPNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.750e-60
Identity = 111/234 (47.44%), Postives = 147/234 (62.82%), Query Frame = 1 
Query:   55 QICHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPG--GQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            Q+  T+Y++NLNEKIKK +LKK+L+S+FSQFGKI+D+V CRG++L+GQAW+ FA+   AT+A+++MQGFPF++K MRI FAK +SD++ K  GT+V R+KRK  S   AN +  HQ P                                       P N+L+A  LP E  Q ML  LF+QY G+KE RM PG  G AFIEF D +QA +AL  LNGF LS TH L L+FA++
Sbjct:   10 QVNQTLYINNLNEKIKKQVLKKALYSLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRESPPAANTDAAHQAPQKKQLPTPPTNLTP-------------------------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 206 bits (525), Expect = 7.040e-60
Identity = 107/230 (46.52%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:   67 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPG--GQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            T+Y++N+NEKIKK +LKK+L+++FSQ+GK+++IVAC+G++L+GQAW+V+ + S ATNA+R++QGF F++K +RI FAK +SD+V K+ GT+ PR KR       A  +G    PP A                                + NVPH IL+A  LP E    ML+ LF+QYPGF+E RMAPG  G AFIEF D +QAGIAL  L+GF+LSA   LQL + ++
Sbjct:    8 TLYINNINEKIKKDVLKKTLYALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQSSAMEDGARAAPPPA------------------QYKEPPVAKTPKPIVNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 204 bits (520), Expect = 3.280e-59
Identity = 115/230 (50.00%), Postives = 144/230 (62.61%), Query Frame = 1 
Query:   67 TIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPG--GQAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            T+Y++NLNEKIKK  LKKS++SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPFF+K MRI FAK +SDVV+K  G++V R+KRK  +           PPP A                                    P N+L+A  LP +   +MLS LF+QY GFKE RM PG  G AF+EF D+ QA +AL  L+ FKL+ T  L L+FA++
Sbjct:    9 TVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREA-----------PPPKAPPATEALEAPKPAKAAKADKNA-------------TPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A3Q1F7D3_9TELE (U1 small nuclear ribonucleoprotein A n=5 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q1F7D3_9TELE)

HSP 1 Score: 199 bits (507), Expect = 2.690e-57
Identity = 106/232 (45.69%), Postives = 150/232 (64.66%), Query Frame = 1 
Query:   64 HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRK-LPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPGGQ--AFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            HTIY++NLNEKIKK  LKKSL+++FSQFG+I+DI+  R LK+KGQA+V+F E + A+NALR MQGFPF++K MRIQ+AK++SD++ K  GTYV RD++K     +G  G G  +  P                                    N P++IL+ T LP E  ++MLS LF Q+PGFKE R+ PG    AF+EF +++QAG A +AL GFK++ T+ ++++FA+K
Sbjct:    7 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNLKMKGQAFVIFKEVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKGTEGGGTKKGVPGGAAPMVAGVAE------------------------NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 214
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A1S3WV66_ERIEU (U1 small nuclear ribonucleoprotein A isoform X2 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3WV66_ERIEU)

HSP 1 Score: 196 bits (497), Expect = 1.230e-55
Identity = 107/240 (44.58%), Postives = 152/240 (63.33%), Query Frame = 1 
Query:   64 HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRK---------LPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPGGQ--AFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            HTIY++NLNEKIKK  LKKSL+++FSQFG+I+DI+  R LK++GQA+V+F E S ATNALR MQGFPF++K MRIQ+AK +SD++ K  GT+V RD+++          P+A+ A G GV  P                                      N P++IL+ T LP E +++MLS LF Q+PGFKE R+ PG    AF+EF +++QAG A +AL GFK++  + ++++FA+K
Sbjct:   10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAKGPGVGAP---------------------GTLPDSWLLFPSSQLSENPPNHILFLTNLPEETSELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 228
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BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Match: A0A3B3X697_9TELE (U1 small nuclear ribonucleoprotein A n=1 Tax=Poecilia mexicana TaxID=48701 RepID=A0A3B3X697_9TELE)

HSP 1 Score: 194 bits (494), Expect = 2.480e-55
Identity = 106/231 (45.89%), Postives = 149/231 (64.50%), Query Frame = 1 
Query:   64 HTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTYVPRDKRKLPSAEGANGNGVHQPPPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPGGQ--AFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARK 750
            HTIY++NLNEKIKK  LKKSL+++FSQFG+I+DI+  R LK+KGQA+V+F E + A+NALR MQGFPF++K MRIQ+AK +SD++ K  GTYV RD++K          GV +   AA+                                 N P++IL+ T LP E  ++MLS LF Q+PGFKE R+ PG    AF+EF +++QAG A +AL GFK++ T+ ++++FA+K
Sbjct:    7 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYAKMDSDIIAKMKGTYVERDRKKXXXXXXXX-XGVSKKAAAAMVAGVPAGMPVSGVSE------------------NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU9_ECTSI5.420e-11786.90RNA binding / nucleic acid binding n=2 Tax=Ectocar... [more]
A0A6V1NUL1_HETAK3.250e-6351.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A176VE80_MARPO8.760e-6160.00Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S2UV81_9STRA1.680e-6050.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NJ60_9STRA1.750e-6047.44Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812Y221_SYMMI7.040e-6046.52Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu... [more]
F0YDU7_AURAN3.280e-5950.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A3Q1F7D3_9TELE2.690e-5745.69U1 small nuclear ribonucleoprotein A n=5 Tax=Ovale... [more]
A0A1S3WV66_ERIEU1.230e-5544.58U1 small nuclear ribonucleoprotein A isoform X2 n=... [more]
A0A3B3X697_9TELE2.480e-5545.89U1 small nuclear ribonucleoprotein A n=1 Tax=Poeci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:123337..129472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score358.6
Seed ortholog evalue2.2e-96
Seed eggNOG ortholog2880.D7FNU9
Preferred nameSNRPB2
KEGG koko:K11091,ko:K11094
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352
GOsGO:0000003,GO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0007538,GO:0007539,GO:0007542,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0017069,GO:0018992,GO:0018993,GO:0019099,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030237,GO:0030532,GO:0030619,GO:0030620,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034401,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0036002,GO:0040029,GO:0042802,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097157,GO:0097158,GO:0097159,GO:0097525,GO:0097549,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.snRNA stem-loop binding
EggNOG OGsKOG4206@1,KOG4206@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_003280.1
Exons7
Model size1623
Cds size717
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.5680954-UTR-P-fluviatile_contig13:123336..1242031622815539.5680954-UTR-P-fluviatile_contig13:123336..124203Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 123337..124203 -
1693562179.4943151-UTR-P-fluviatile_contig13:123336..1242031693562179.4943151-UTR-P-fluviatile_contig13:123336..124203Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 123337..124203 -
1622815539.6754138-UTR-P-fluviatile_contig13:129433..1294721622815539.6754138-UTR-P-fluviatile_contig13:129433..129472Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 129434..129472 -
1693562181.7146425-UTR-P-fluviatile_contig13:129433..1294721693562181.7146425-UTR-P-fluviatile_contig13:129433..129472Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 129434..129472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.5811727-CDS-P-fluviatile_contig13:124203..1242871622815539.5811727-CDS-P-fluviatile_contig13:124203..124287Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 124204..124287 -
1693562179.5071223-CDS-P-fluviatile_contig13:124203..1242871693562179.5071223-CDS-P-fluviatile_contig13:124203..124287Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 124204..124287 -
1622815539.5924833-CDS-P-fluviatile_contig13:124856..1249101622815539.5924833-CDS-P-fluviatile_contig13:124856..124910Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 124857..124910 -
1693562179.5154407-CDS-P-fluviatile_contig13:124856..1249101693562179.5154407-CDS-P-fluviatile_contig13:124856..124910Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 124857..124910 -
1622815539.6117792-CDS-P-fluviatile_contig13:125865..1259601622815539.6117792-CDS-P-fluviatile_contig13:125865..125960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 125866..125960 -
1693562179.5233595-CDS-P-fluviatile_contig13:125865..1259601693562179.5233595-CDS-P-fluviatile_contig13:125865..125960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 125866..125960 -
1622815539.6228983-CDS-P-fluviatile_contig13:126361..1265841622815539.6228983-CDS-P-fluviatile_contig13:126361..126584Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 126362..126584 -
1693562179.531611-CDS-P-fluviatile_contig13:126361..1265841693562179.531611-CDS-P-fluviatile_contig13:126361..126584Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 126362..126584 -
1622815539.6369686-CDS-P-fluviatile_contig13:127388..1274901622815539.6369686-CDS-P-fluviatile_contig13:127388..127490Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 127389..127490 -
1693562180.5464694-CDS-P-fluviatile_contig13:127388..1274901693562180.5464694-CDS-P-fluviatile_contig13:127388..127490Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 127389..127490 -
1622815539.650814-CDS-P-fluviatile_contig13:127989..1280561622815539.650814-CDS-P-fluviatile_contig13:127989..128056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 127990..128056 -
1693562181.6888318-CDS-P-fluviatile_contig13:127989..1280561693562181.6888318-CDS-P-fluviatile_contig13:127989..128056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 127990..128056 -
1622815539.6647367-CDS-P-fluviatile_contig13:129341..1294331622815539.6647367-CDS-P-fluviatile_contig13:129341..129433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 129342..129433 -
1693562181.7046883-CDS-P-fluviatile_contig13:129341..1294331693562181.7046883-CDS-P-fluviatile_contig13:129341..129433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 129342..129433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1629.1prot_P-fluviatile_contig13.1629.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 124204..129433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1629.1

>prot_P-fluviatile_contig13.1629.1 ID=prot_P-fluviatile_contig13.1629.1|Name=mRNA_P-fluviatile_contig13.1629.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=239bp
MGDVGQICHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKL
KGQAWVVFAEQSMATNALRQMQGFPFFEKKMRIQFAKKESDVVTKRAGTY
VPRDKRKLPSAEGANGNGVHQPPPAAVPPAGLPAVPPPVAVQAPAAFAPP
AVPVPAGPIGNVPHNILYATGLPPEITQVMLSKLFEQYPGFKEARMAPGG
QAFIEFVDQMQAGIALNALNGFKLSATHPLQLAFARKA*
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mRNA from alignment at P-fluviatile_contig13:123337..129472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1629.1 ID=mRNA_P-fluviatile_contig13.1629.1|Name=mRNA_P-fluviatile_contig13.1629.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6136bp|location=Sequence derived from alignment at P-fluviatile_contig13:123337..129472- (Porterinema fluviatile SAG_2381)
GGGGGGAGATCTGCTTGTGTACGCGGACAACAGGCGACCATGGGGGATGT
GGGACAGATATGCCACACGATCTATGTGAGCAACCTGAACGAGAAGATCA
AGAAGCCTCTCCTGAAGAAGTCGCTACACAGGTGCGTGTTGCATTCATGT
TGAAGTTTTTGGGCTTGTTTGTTATGTCGGCAGCTAGGGACGTGCACGCT
CTCTCCCCCCACCGCCTCCGCGGGCGGTCCGAGGGCGCGGTAAGGTTTTG
CGACCGCCCGAGGTGCTTTTGCCTCCAAAGCGAAGTTACAAATGTTTCCT
GTAATCGGCGATACAATATGTGAGCTCACTTTTGGGTATCTGGACTTCGC
CGCGGCGGACACGGTATCCCTACCCTGGAATGCTATTTGAATATCAGCAA
TGTGTTTGCGACAGGTTCCTTCAACGCACGTTTTTTCTTGAATCCCTGAA
CAGCACTCCGCGAGGAGATAATGTTCGCGAGGAGATATTAGAAGAGGCTC
TCTGTCACTCTTCTGTCTCTCTCCTCTCTATCTCTACCTCTCTCTTTCCC
CCCAGCTTTTTTGTTTTCGGAGTCGGAGCGGGTGGAGCAACACACCATGA
CACAAGCAGAGCTCTGCTCGTCTCCCATCGCGCCAGCGCGTCGTCACCTT
TCGCTTGAAATCACTTTTGCCTGTTTGGAAGCCTCAGAAAATTGCTATGT
AGATCGCGAGGGCAGGAAAGAGTTTGGAACTTTGGACGAAGGTTTGCTCT
GCCTGTCTCTAGCGCATGCTTTTCTAAAGAGCATTGGCCGGAAAGTTTTT
CACGTGGGTTCAAGTACCTTGGTAACACGTGCGAGGGTCTTCGAGGCTTG
TGCTGGTAAGCAAGACGAGACTCTCCTTCTCCTCGCTGGGACGTAAGGCG
GTACCCGTTGGTTGAACCAGGGTGTGCAGTCTCTCACCTTTTTGGCGTTT
GCCCTACATCCCCTGAGTGCCTGCCGCGAGTGAAAGAACGTTGTTCGTAC
CCTTTTTGTGCACTTTTGTAGTCTTCTCCGGCTCCCTGCTAACAATCTCT
CGGTTTTGAGACAGGGACTACCTCTCCTTTTTCAATTCGGAGGTCTTGCG
AGGTTACTTGAAGATAATTCCCGCCGCCCGCCTTCCCTCCATCTAGCCGC
TTGCCATCCGTCCTGGTCGCACCGGATTCACCAGTGTCAATTGCGTGCAA
CGCGAGTCTTGCGTGTGCCCTTTGCCGACCTTTCCACCTTCGTTCGCATT
GAGTACCTTTCACTGACCCTTGTGCTTCTCTCTTCACTGCACACACGTAC
CCTTCCTTCACTGTAAAAAAACATGACGACGGAACGCCATGTTTTCACGC
CATTCGACGCCAACTCTGGGGGAACATCACGCACACACACATGAACACGT
GCGCGCGTAACAACAGCGTGTTCAGCCAGTTCGGGAAGATTGTGGACATC
GTGGCCTGCCGGGGGCTCAAGCTCAAGGGACAGGTATGGCCGACTTTTGA
CCCCTGCCGTCTAACGATTGCATTACTCGCTTGCTTAGGAATCCACCACG
GAGCCGAATGAGCGTTGACAACAACGACAGCAGCAACGCGGGTTTCAATC
CAACCCGATTCGTGGTGCCGCTGTTTGTTTGCAACTTCGCTATGCGGAGC
GGCACGTGGGTGTTTGCGTTGCCACCCCGAGTAGCTGACGCGCTTAGGTT
TACCGCTTCAGATTCCCACCATCTCCTTTGAGCCGCACACAGCAGCTGCG
ATAAACCTGTGTGAGTGCGGCAAGACTTTGAACACACGCGTATAAGCTCG
CCCAAAAAAAATGCCGCAGCAGACAGTTTAGCAGACAGTTTCTAGGGGCA
TATGCTCTGATTTTGGAAAGCCGTTCGGCCGGGCTAAAGTCGACTCTCCG
TTGTGCCCCTCCCGCCCTATTGTCGTCCACGACCACCGGTTGTCTCCTCG
CCTGGCCTGCGTTGTGCCCACGCGCCCGGCAGGCATGGGTGGTGTTCGCG
GAGCAGAGCATGGCCACGAACGCCCTCCGACAGATGCAGGGGTTCCCGTT
CTTTGAGAAAAAGATGCGAATTCAATTCGCCAAGGTTAGTCAGCTTCCAA
ATATTAGTCAAGCATGGACCTTTTTCGTCTTTTGCGTGGGATTTGGTTAG
TCGGAACGAAACGGCCAGAGGCTACTACAACGTTGCCAAAGAGAAGGCTC
TGCTTTTTCCTTGCAAATGTGTTGCTGCCCCATCGTGCTGCTGCTGACGA
CGTCGGGAACCTGCCTCGTGCAAACCGTCGTGACCACGCTGTCCGCCGCC
AGTCCACCAATCCTTCATCTGCTGCTTCAACCACCTCTTCTCATGTGTGC
TGAAGGATCGCACTTGCACTACATATGATTCGGCGATTTAATTTTTTATT
TTGACATGTTAAAGTAACTTTCAATACACCAGCTGCAGTGTAATTGTCTC
CCGTCTTGAACAATCAGGCAGTCACCCATGGAGCACGAGCCTAGCGACGA
TGTCTGTGCTTTCTTGTGCCTCTTGCCAGAAGGAGTGCGCCGCTATCATC
CTACAGCCCCGGCGGAAAGTAGAAGCACGTAGGAGGTCGTCTGAGTGATT
GAGAAACAGCGTGAGCTACGGGGCTATAAACCTAAACCAAAGGAATTTAG
TGAGAATGAGCGAAAATATGGAAACGCTCCCTCGCCAAATATTCAGCCAG
CACGCCGATGAAGTTCTACCCTTTTCCGTTAAAAGCTCTCACTTCGAATA
CAGGTTTGGTGGATTGCAAATGCCGCCAACTCACGAAGCGCATGCGGCCA
CCACGCGCGCCAATCCACGACGGTCCTCCGTCGCTCCGTCCCTGAATCAC
GCGCCCCCTGTCTCCTTGCCGCTACACCGATGTTGCAGAAAGAGAGTGAC
GTGGTGACGAAAAGGGCGGGAACCTACGTCCCCCGCGACAAGCGGAAGCT
CCCCTCGGCAGAGGGGGCGAATGGCAATGGCGTGCACCAGCCGCCGCCGG
CTGCAGTCCCGCCCGCTGGCCTCCCGGCGGTCCCTCCACCTGTAGCGGTC
CAGGCACCCGCTGCATTCGCCCCTCCCGCGGTGCCAGTGCCGGCTGGGCC
CATTGGGAATGGTGAGTTTTTTTTTTCGTTCGCTCCGGTTCTCCTCTTTA
TCTACCGCCGCAGCATTGCTGGAATGACACACATCCCAGCGTTCCAACAA
TCTGTTCAAGGATTGCGCTCTCCGTCATTTTCGCATTTGTTTCGCCAAGA
TACGGGGGGCGCGGGTGCAGTCTTCTCCCTTTTGGTATGTTTTACTTCCA
TTGCCGAATGTGTTGGAGTACGTTCTCGGTGAGATTTCGTCGACTCCACG
GTACAATCGTGAAGCCCCCCCTTCCCCCCATCTCTGCGCCACGCCCATCG
GCGCCGCAACCCCAAACACCCTCGAGCGCATCCGTCCACCGTCCTAATAT
CTTCCACATTTCATTTGTATTTACTTTCCATGTTGCTATCGCTTGACTTT
CCGTTGGCGCAGTGCCGCACAACATCCTGTACGCCACGGGGCTCCCGCCG
GAGATTACACAAGTCATGCTGTCAAAGCTCTTCGAGCAGTACCCAGGGTT
CAAGGAGGTGAGCCAATGTGGAGGGCGCAGAGAGGGGGATCGGGGAGCGA
GGGAGGGCTGCAAGGGTGCAAAATGTCGAGACGACTTCCTTTCTTCCGCC
GGACGCACGCGACCCATAGCCACTGCTCAGTGCGCTTCATTTTTTCTTCG
CTGCAAGAGCTCAATATTCCGGTCCGAAAAAGAGCCTCAGGATGCCTGAT
GCAAGATTTGCGACGTCTTGTCTGAATGTGCCGGGCGAGGATGGGTTGAC
AATGAAGAAGGGCGCACCCCGCTAGAAGATGCACCAGCGTGGGGACACGG
ACGGTGGATTGGATGCCTGTCTGTACGCCTGCAATCATGTGGCTCCTCAT
ACCCGTTGCCTCTGTTCGTCCTTCTGGTGGTACTGCTAATGCATCTCTTT
GTATTGGAGGGCAGGCAACTGTAGGTGTGGTGGCCAATACACGTACCCAT
TATGATTGCACATGCGTTTCAAGTGGCACAGGCCAATCATATGCTGTACC
TCAAGAAATGAAAAATTTGAGGGATCGAAGTGTTTCCTCCCGCTTTGGCT
TACACGCCCACAAGCGGTCAAAAGACGTGGCCGGGCGCCCGCGTAGAGCG
CTAGGTACGACCACGTTCGACACCGACAACAATAAGTGAGCAGTTACGTC
GCGAAGCCTCCTCCTCCCGGAGCTCCGTTCACTATGATGGGAGACACAGC
TGTTCCTCCACAGCTTCTGCTGAAGGCGGGATCCACAATTGTTCCAAGCC
TCGTAGGTTTCTCAGGGGCGCTCTCTGCACAGCTTGACGGAAAATCAGCG
TCCATTTGGGCCGTTATTCGGGAAGGAGAATGGCGCCGAAGATCCTATCA
TTCGGTTGTCTTTGACAAATCATTGTTCAAGTGGCGCTCTTGGTGCTTCC
CCCTCCCTCCCTACTCGCTGCACCTTCCACCTTGGCCCCCTTTTTTCGTT
GTGCTTCGGCAGGCAAGGATGGCGCCTGGCGGGCAAGCTTTCATCGAGTT
CGTCGACCAGATGCAGGTGAGAGGAAGAGTGAGAGCGAGAGCGAGAGATA
GATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGACAGAGAGAAATGCGCCGGACTGTGGGTTTGAGAGGGGCAA
CTGTTGCGGGGTTTTCAGGCGACGTAGCTCTTGGAAGGATTGCGGAAGAT
TGAGCAGCGAACCCTAGGTGCGAGGAATTCTGTCTTGGTCTTGTTCCGAG
CCAGATACGCACTACTAGTGCCGGCCGTGGGGCTGTGTCTCTGTCGGTTC
GCGTTGGGGATTGTGAAGCTGAAGGTGGCATTTCGACGGCCTCATCGCCC
TGCGCGCGCAACTCCCCCACCAGAGTTCGTGCGCTCCATACGCGACAAGC
CGACGCTTCTCGTGCCAACGCTTCGACGAAATGACATGCGTTGCTCAAGG
TCGTGAGAAACGCCCCTCCTCCCCGCTGCGTCGTCTTTGACCGTCGTTGA
CGTCGTCGTTGTTGTTGTTGACGTTGGCGTTGTTATTGTGTGCGCGCCCG
CGTCTTGGGGGCCGTCTTCGGGACCGATCGACCAGGCCGGAATCGCGCTC
AACGCCCTCAACGGTTTCAAGCTCTCGGCGACGCACCCCCTCCAATTAGC
GTTCGCGCGCAAGGCGTGAGCGAGATGAAATCGTGGATGGCAGCTCATCA
CGTGTCCCTCCCTTCCGTCTTTCCGGCCAACCCATTTTCCCTGGGATCCA
TACACCCTCTTTGGAGTGGCTGGTAGGCAACGGGAGCACGGGTGATGTGG
GATCTGAAGATCCATCGTAGAATAGTGGACGTATGAGATGCATGAAACAC
CGGGAGTGCGTACGGGTAGGGATAGGGGTGGAGGGGGGGGGCGTTCATGG
CCAGGTTTAGTGTGAGCACCGTAACGCACCTTCGGGGGTAGTTTCGCTGC
TTTGGTCGCAGTGTGCTAGCATATGGTGCCTATCGCCCGGTGTGATCTGA
TTGACGGTTTGGAGTGGTTGGGGCGGCAGCATTAAAATCGGCGGCGTCGC
CCTTTGCTTGTCCGTAGGTCGAGACAAGGGGGCTGGGGTCCCTACGGCGG
TCGTGTTTCCTCTCTCCTAGATTTTGGACGATTGCAGCAGCGCACTGCCG
ATCCTTCTTTATTTGCCTTTTGCTCTTGTTTCCGTTGTGCGCGAGCGAGT
GGAGGTTAACAAGAAATAAATTGCTCATCACGTGGACGCGGCGGTGGAAA
CACAGTCGAGTCTTGGTGAAGTACTTCCATTCCTGGTCAGCTTGCACGCG
CCTACGCTTCTCGCTCGAGCAGTAACCCGCGAGATCAAAACGTATTCTAT
TTGTCGTGGCGGTCGAAGCCGTCCGAGAGATGGTATGGTTGCTGCGAGAG
TACGCAGCAAACGATCGAATGTCCCGTCACCTGAACATCAAACTCAAAAA
GGCATCTAAGAAAAGAGCTCCCCCCCGCCTCTTGACTATACTCCCTCCCC
TGAAATGCAAAATAGAGTACCCGGAACCTTCATGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:123337..129472-

>mRNA_P-fluviatile_contig13.1629.1 ID=mRNA_P-fluviatile_contig13.1629.1|Name=mRNA_P-fluviatile_contig13.1629.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1434bp|location=Sequence derived from alignment at P-fluviatile_contig13:123337..129472- (Porterinema fluviatile SAG_2381)
ATGGGGGATGTGGGACAGATATGCCACACGATCTATGTGAGCAACCTGAA
CGAGAAGATCAAGAAGCCTCTCCTGAAGAAGTCGCTACACAGATGGGGGA
TGTGGGACAGATATGCCACACGATCTATGTGAGCAACCTGAACGAGAAGA
TCAAGAAGCCTCTCCTGAAGAAGTCGCTACACAGCGTGTTCAGCCAGTTC
GGGAAGATTGTGGACATCGTGGCCTGCCGGGGGCTCAAGCTCAAGGGACA
GCGTGTTCAGCCAGTTCGGGAAGATTGTGGACATCGTGGCCTGCCGGGGG
CTCAAGCTCAAGGGACAGGCATGGGTGGTGTTCGCGGAGCAGAGCATGGC
CACGAACGCCCTCCGACAGATGCAGGGGTTCCCGTTCTTTGAGAAAAAGA
TGCGAATTCAATTCGCCAAGGCATGGGTGGTGTTCGCGGAGCAGAGCATG
GCCACGAACGCCCTCCGACAGATGCAGGGGTTCCCGTTCTTTGAGAAAAA
GATGCGAATTCAATTCGCCAAGAAAGAGAGTGACGTGGTGACGAAAAGGG
CGGGAACCTACGTCCCCCGCGACAAGCGGAAGCTCCCCTCGGCAGAGGGG
GCGAATGGCAATGGCGTGCACCAGCCGCCGCCGGCTGCAGTCCCGCCCGC
TGGCCTCCCGGCGGTCCCTCCACCTGTAGCGGTCCAGGCACCCGCTGCAT
TCGCCCCTCCCGCGGTGCCAGTGCCGGCTGGGCCCATTGGGAATGAAAGA
GAGTGACGTGGTGACGAAAAGGGCGGGAACCTACGTCCCCCGCGACAAGC
GGAAGCTCCCCTCGGCAGAGGGGGCGAATGGCAATGGCGTGCACCAGCCG
CCGCCGGCTGCAGTCCCGCCCGCTGGCCTCCCGGCGGTCCCTCCACCTGT
AGCGGTCCAGGCACCCGCTGCATTCGCCCCTCCCGCGGTGCCAGTGCCGG
CTGGGCCCATTGGGAATGTGCCGCACAACATCCTGTACGCCACGGGGCTC
CCGCCGGAGATTACACAAGTCATGCTGTCAAAGCTCTTCGAGCAGTACCC
AGGGTTCAAGGAGTGCCGCACAACATCCTGTACGCCACGGGGCTCCCGCC
GGAGATTACACAAGTCATGCTGTCAAAGCTCTTCGAGCAGTACCCAGGGT
TCAAGGAGGCAAGGATGGCGCCTGGCGGGCAAGCTTTCATCGAGTTCGTC
GACCAGATGCAGGCAAGGATGGCGCCTGGCGGGCAAGCTTTCATCGAGTT
CGTCGACCAGATGCAGGCCGGAATCGCGCTCAACGCCCTCAACGGTTTCA
AGCTCTCGGCGACGCACCCCCTCCAATTAGCGTTCGCGCGCAAGGCGTGA
GCCGGAATCGCGCTCAACGCCCTCAACGGTTTCAAGCTCTCGGCGACGCA
CCCCCTCCAATTAGCGTTCGCGCGCAAGGCGTGA
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