mRNA_P-fluviatile_contig13.1627.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1627.1
Unique NamemRNA_P-fluviatile_contig13.1627.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1627.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.720e-43
Identity = 128/268 (47.76%), Postives = 151/268 (56.34%), Query Frame = 1 
Query:   13 LATVAPSHGG--------TQSRSSSVPSINTPRSCLAAARNAADSSADCAWLELQREMGSLRADNQMLPRDSGRGGGPESDAHRQRPQGST-------PSVLTTSLPENSTLYPEVVSGLVAKTPTLELDSPTPAWKEERSEDKPITVFELTQVGGGPETNGGKITAVDNSAPLREEKA-ITEMPGVDKTPENAVSPKETTQGQRRKGGGIPGDNIELPRRRSRTTVREGDYAAATATSRKWKPNVKRSLEWFPVRGRQVFLVDPGDV 768
            LA V PSHGG        +QSR  SVPSINT  SC   A     +SAD AWLELQREMGSL+ADN+ML RDS RGG        +    ST        SV+T SL ENST+  +  + ++AKT T  LDSP  AWK         TVFELTQV G PE + G+  +  +SA L  E    T++  VD   +  VSP E    Q R G G   D      RR R    +G+  AA+AT+RKWKPN  R LEWFPV G+QVFLVDP DV
Sbjct:  723 LAAVVPSHGGDNSVYARFSQSRGLSVPSINTS-SCSRPAAEKVPTSADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXXSGECINTSTISASSPAMSVVTKSLAENSTVGAQATTNMLAKTLTRTLDSPLSAWKGGNPVSATATVFELTQVDGRPEKDAGEGASSPSSASLAHETTRSTDIWRVDNQ-QQEVSPPEDCSKQVRMGEGDKPDATASSHRRRRIPD-DGNSTAASATTRKWKPNASRPLEWFPVPGKQVFLVDPNDV 987
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BLAST of mRNA_P-fluviatile_contig13.1627.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.610e-40
Identity = 126/284 (44.37%), Postives = 155/284 (54.58%), Query Frame = 1 
Query:    4 PRGLATVAPSHGG--------TQSRSSSVPSINTPRSCLAAARNAADSSADCAWLELQREMGSLRADNQMLPRDSGRGGGPESDA--HRQRPQGSTP--SVLTTSLPENSTLYPEVVSGLVAKTPTLELDSPTPAWKEERSEDKPITVFELTQVGGGPETNGGKITAVDNSAPLREEKA-ITEMPGVDKTPENAVSPKETTQGQRRKGGGIPGDNIELPRRRSRTTVREGDYAAATATSRKWKPNVKRSLEWFPVRGRQVFLVDPGDVNFAAVA--VNKAAEAG 810
            P  LA VAPSHGG        +QSR  SVPSINT  SC   A     ++AD AWLELQREMGSL+ADN+ML RDS +G         +      S+P  SV+T SL ENST+  +  + ++AKT T  LDSP  AWK   +     TVFELTQVGG PE + G+  +   S  L  E    T+   VD   +    P+E ++  R   G  P  +      R        +  AA+AT+RKWKPN  R LEWFPV GRQVF VDP DVN A  A  V +  E+G
Sbjct:  640 PLRLAAVAPSHGGGNSVYARFSQSRGLSVPSINT-NSCSMPAAKKLPTAADEAWLELQREMGSLKADNRMLIRDSSQGXXXXXXECINTSTISASSPAMSVVTKSLAENSTVGAQATTDMLAKTLTRTLDSPLSAWKGGNTVSATATVFELTQVGGRPEKDAGECASSPTSVSLTHETTRSTDNWRVDNQQQEVSPPEECSKQVRVAEGDKP--DTAASSHRXXXXPXXXNSTAASATTRKWKPNAFRPLEWFPVPGRQVFRVDPNDVNAAPAAEPVGRPVESG 920
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9X4_9PHAE1.720e-4347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU7_ECTSI3.610e-4044.37Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:93967..96419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_003300.1
Exons2
Model size1758
Cds size1755
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.1004658-CDS-P-fluviatile_contig13:93966..943571622815535.1004658-CDS-P-fluviatile_contig13:93966..94357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93967..94357 +
1693562169.025436-CDS-P-fluviatile_contig13:93966..943571693562169.025436-CDS-P-fluviatile_contig13:93966..94357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93967..94357 +
1622815535.1212654-CDS-P-fluviatile_contig13:95053..964171622815535.1212654-CDS-P-fluviatile_contig13:95053..96417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 95054..96417 +
1693562169.1647654-CDS-P-fluviatile_contig13:95053..964171693562169.1647654-CDS-P-fluviatile_contig13:95053..96417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 95054..96417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1627.1prot_P-fluviatile_contig13.1627.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 93967..96417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1627.1

>prot_P-fluviatile_contig13.1627.1 ID=prot_P-fluviatile_contig13.1627.1|Name=mRNA_P-fluviatile_contig13.1627.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=585bp
EPRGLATVAPSHGGTQSRSSSVPSINTPRSCLAAARNAADSSADCAWLEL
QREMGSLRADNQMLPRDSGRGGGPESDAHRQRPQGSTPSVLTTSLPENST
LYPEVVSGLVAKTPTLELDSPTPAWKEERSEDKPITVFELTQVGGGPETN
GGKITAVDNSAPLREEKAITEMPGVDKTPENAVSPKETTQGQRRKGGGIP
GDNIELPRRRSRTTVREGDYAAATATSRKWKPNVKRSLEWFPVRGRQVFL
VDPGDVNFAAVAVNKAAEAGVLSATVARAWNSHLPHGCDFRTEGRGAGGA
DQSLDRGYTGFPRRKPWEGTHDKEAGADGEAAKRPGSGDPRHLEQRSERS
GHQEKTNLQTVGFPSAARLVDMLRSPPIENRDATARQRSCRRPRPRSGAG
GTRGSHDSGGLVLMGSSSTYQRSEIKHGEKPLGESTRCNNAFGTSATPEG
GRLACLSPNALRGGRDVDARGWSVEDDLHRATRQVRDAAASTADLSASGQ
GRVHRLSHRRVGKGRRPTDVEQKGTNELGLMLGRMHGAGRGQQQQIFVRS
GQGVESIGTANASNSSRCSQGRGTTTCPVGRAHVR
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mRNA from alignment at P-fluviatile_contig13:93967..96419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1627.1 ID=mRNA_P-fluviatile_contig13.1627.1|Name=mRNA_P-fluviatile_contig13.1627.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2453bp|location=Sequence derived from alignment at P-fluviatile_contig13:93967..96419+ (Porterinema fluviatile SAG_2381)
GAACCCAGGGGGCTCGCGACAGTCGCACCGAGTCACGGAGGTACGCAGTC
GAGGAGCTCGTCGGTGCCGTCAATCAATACCCCGCGGAGCTGTTTGGCGG
CGGCGAGAAATGCCGCAGACTCCTCTGCTGATTGTGCCTGGCTTGAGCTC
CAGAGGGAGATGGGATCGCTCAGGGCAGACAATCAGATGTTACCACGCGA
TAGTGGCAGAGGCGGCGGTCCAGAGAGCGATGCGCACCGCCAACGCCCGC
AAGGATCGACTCCATCGGTGCTGACGACATCTCTCCCTGAAAATTCGACG
CTGTATCCCGAGGTAGTCTCGGGCTTGGTAGCCAAGACTCCGACACTGGA
GCTTGACAGCCCGACGCCGGCGTGGAAAGAAGAGCGATCAGGTGAGAGCC
TGTCTAAAAAGCGCACCTGCGAGCAAGGAGGGTAAAAGCCTTCACGACCA
CCTCACGAAACACGATTTAAATCATTCTGCGCCCGGTTTGTGGTGACAAA
CTTCGTTCAAGTAGTTCTATCCCATGGTCGATGGGATTCACAAGCAGAGT
GTAATGTGTGGTAGCACGATTATCGAGGGGATTGACGTGCGACCTGGTGA
AGTACAGGCTTTCCGTGTACGCCGGTACACGTGGCACCCTATGGGCGACG
CATTGTGTTGCTTTTCAATGAAGACGCCATCGGGGTGGTGCTTGGGGCGC
GTGATCACGCCGAATATCGGTTTCTTTAGTGAGAGAGAGACGAGAATATA
TAGCCAATATATACTTGAAAGGAGAAATCTTGCAGCGACAACGCAGAAAT
CTCAATTAAACTTCTGGGGCGGGATGTGGGGGGGGGGGGTTGCTGATTTT
TTAACAGTTTTAGCGTCTCTAGCTTGAGGACTGTCCATCGTCCTACGCGT
GTGACGTGCACCGACGCGCATGTATGCGCGGCGGTTTGGTTTGTTTGAAG
GAAAGTCCTTATGGTACCGTCGTGGCCGTGCTCTTACACTTTGACCCGGG
CGTGGCCCAGAGTAAAAGAAACGCCTACTGTGCTCGAACAATCTCCCCTC
CTACTGTACTTTTCAATCGCGCCTCGCCCCACACTAGAGGACAAACCTAT
AACGGTTTTCGAGCTGACCCAAGTGGGCGGCGGACCAGAGACCAACGGAG
GAAAGATCACAGCTGTCGACAACTCCGCTCCCCTTCGCGAGGAAAAAGCG
ATAACAGAGATGCCAGGTGTGGACAAGACGCCAGAAAACGCCGTTTCTCC
GAAGGAAACTACGCAAGGCCAACGGCGAAAGGGCGGCGGTATCCCGGGCG
ACAACATTGAGCTGCCCCGACGCCGATCACGAACTACCGTGCGAGAAGGT
GACTATGCTGCGGCTACGGCGACGAGCAGGAAGTGGAAGCCGAACGTCAA
GCGATCCCTAGAGTGGTTTCCCGTGCGTGGCCGACAGGTGTTTCTCGTCG
ATCCTGGCGATGTTAACTTCGCCGCAGTTGCAGTTAACAAGGCGGCAGAA
GCGGGAGTCCTGTCAGCGACGGTTGCCCGAGCATGGAACAGCCACTTACC
TCACGGATGCGACTTTAGAACCGAAGGCCGGGGGGCTGGGGGTGCAGACC
AAAGCTTGGACAGGGGGTATACCGGCTTTCCCCGTCGGAAACCGTGGGAA
GGAACTCACGACAAGGAAGCAGGCGCCGATGGAGAAGCTGCTAAGCGGCC
AGGGAGTGGGGATCCAAGACATTTGGAACAGAGGAGTGAACGTAGTGGCC
ACCAAGAGAAAACCAATCTGCAGACGGTAGGCTTCCCTTCCGCGGCCCGC
TTGGTCGATATGTTGCGTTCTCCACCAATAGAAAACAGGGACGCGACGGC
GAGGCAAAGGAGTTGTCGTCGGCCACGCCCACGTTCCGGCGCTGGCGGAA
CTCGGGGAAGCCACGACTCCGGTGGGTTGGTTTTGATGGGGAGCTCCTCC
ACGTACCAACGGTCGGAAATCAAGCACGGGGAAAAGCCACTTGGGGAGAG
CACGCGGTGTAATAATGCGTTTGGGACATCAGCGACACCGGAGGGCGGCC
GATTGGCTTGCCTTTCCCCCAACGCATTGCGAGGAGGGAGGGACGTGGAC
GCGAGGGGCTGGTCGGTCGAAGATGATCTCCATCGTGCTACACGGCAAGT
GAGAGATGCAGCAGCTTCAACGGCTGATTTATCTGCAAGCGGGCAGGGCA
GGGTACATCGGCTTTCTCATCGACGTGTGGGAAAAGGCCGTCGCCCTACC
GATGTGGAACAAAAGGGGACAAACGAGCTGGGCTTGATGCTCGGACGGAT
GCATGGAGCTGGCAGGGGCCAACAACAACAAATTTTCGTTCGCTCTGGTC
AGGGGGTCGAGAGTATTGGCACCGCCAACGCAAGCAACAGCAGTCGTTGT
TCACAGGGACGTGGGACTACGACATGTCCAGTGGGTAGAGCGCACGTTAG
GGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:93967..96419+

>mRNA_P-fluviatile_contig13.1627.1 ID=mRNA_P-fluviatile_contig13.1627.1|Name=mRNA_P-fluviatile_contig13.1627.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3510bp|location=Sequence derived from alignment at P-fluviatile_contig13:93967..96419+ (Porterinema fluviatile SAG_2381)
GAACCCAGGGGGCTCGCGACAGTCGCACCGAGTCACGGAGGTACGCAGTC
GAGGAGCTCGTCGGTGCCGTCAATCAATACCCCGCGGAGCTGTTTGGCGG
CGGCGAGAAATGCCGCAGACTCCTCTGCTGATTGTGCCTGGCTTGAGCTC
CAGAGGGAGATGGGATCGCTCAGGGCAGACAATCAGATGTTACCACGCGA
TAGTGGCAGAGGCGGCGGTCCAGAGAGCGATGCGCACCGCCAACGCCCGC
AAGGATCGACTCCATCGGTGCTGACGACATCTCTCCCTGAAAATTCGACG
CTGTATCCCGAGGTAGTCTCGGGCTTGGTAGCCAAGACTCCGACACTGGA
GCTTGACAGCCCGACGCCGGCGTGGAAAGAAGAGCGATCAGGAACCCAGG
GGGCTCGCGACAGTCGCACCGAGTCACGGAGGTACGCAGTCGAGGAGCTC
GTCGGTGCCGTCAATCAATACCCCGCGGAGCTGTTTGGCGGCGGCGAGAA
ATGCCGCAGACTCCTCTGCTGATTGTGCCTGGCTTGAGCTCCAGAGGGAG
ATGGGATCGCTCAGGGCAGACAATCAGATGTTACCACGCGATAGTGGCAG
AGGCGGCGGTCCAGAGAGCGATGCGCACCGCCAACGCCCGCAAGGATCGA
CTCCATCGGTGCTGACGACATCTCTCCCTGAAAATTCGACGCTGTATCCC
GAGGTAGTCTCGGGCTTGGTAGCCAAGACTCCGACACTGGAGCTTGACAG
CCCGACGCCGGCGTGGAAAGAAGAGCGATCAGAGGACAAACCTATAACGG
TTTTCGAGCTGACCCAAGTGGGCGGCGGACCAGAGACCAACGGAGGAAAG
ATCACAGCTGTCGACAACTCCGCTCCCCTTCGCGAGGAAAAAGCGATAAC
AGAGATGCCAGGTGTGGACAAGACGCCAGAAAACGCCGTTTCTCCGAAGG
AAACTACGCAAGGCCAACGGCGAAAGGGCGGCGGTATCCCGGGCGACAAC
ATTGAGCTGCCCCGACGCCGATCACGAACTACCGTGCGAGAAGGTGACTA
TGCTGCGGCTACGGCGACGAGCAGGAAGTGGAAGCCGAACGTCAAGCGAT
CCCTAGAGTGGTTTCCCGTGCGTGGCCGACAGGTGTTTCTCGTCGATCCT
GGCGATGTTAACTTCGCCGCAGTTGCAGTTAACAAGGCGGCAGAAGCGGG
AGTCCTGTCAGCGACGGTTGCCCGAGCATGGAACAGCCACTTACCTCACG
GATGCGACTTTAGAACCGAAGGCCGGGGGGCTGGGGGTGCAGACCAAAGC
TTGGACAGGGGGTATACCGGCTTTCCCCGTCGGAAACCGTGGGAAGGAAC
TCACGACAAGGAAGCAGGCGCCGATGGAGAAGCTGCTAAGCGGCCAGGGA
GTGGGGATCCAAGACATTTGGAACAGAGGAGTGAACGTAGTGGCCACCAA
GAGAAAACCAATCTGCAGACGGTAGGCTTCCCTTCCGCGGCCCGCTTGGT
CGATATGTTGCGTTCTCCACCAATAGAAAACAGGGACGCGACGGCGAGGC
AAAGGAGTTGTCGTCGGCCACGCCCACGTTCCGGCGCTGGCGGAACTCGG
GGAAGCCACGACTCCGGTGGGTTGGTTTTGATGGGGAGCTCCTCCACGTA
CCAACGGTCGGAAATCAAGCACGGGGAAAAGCCACTTGGGGAGAGCACGC
GGTGTAATAATGCGTTTGGGACATCAGCGACACCGGAGGGCGGCCGATTG
GCTTGCCTTTCCCCCAACGCATTGCGAGGAGGGAGGGACGTGGACGCGAG
GGGCTGGTCGGTCGAAGATGATCTCCATCGTGCTACACGGCAAGTGAGAG
ATGCAGCAGCTTCAACGGCTGATTTATCTGCAAGCGGGCAGGGCAGGGTA
CATCGGCTTTCTCATCGACGTGTGGGAAAAGGCCGTCGCCCTACCGATGT
GGAACAAAAGGGGACAAACGAGCTGGGCTTGATGCTCGGACGGATGCATG
GAGCTGGCAGGGGCCAACAACAACAAATTTTCGTTCGCTCTGGTCAGGGG
GTCGAGAGTATTGGCACCGCCAACGCAAGCAACAGCAGTCGTTGTTCACA
GGGACGTGGGACTACGACATGTCCAGTGGGTAGAGCGCACGTTAGGAGGA
CAAACCTATAACGGTTTTCGAGCTGACCCAAGTGGGCGGCGGACCAGAGA
CCAACGGAGGAAAGATCACAGCTGTCGACAACTCCGCTCCCCTTCGCGAG
GAAAAAGCGATAACAGAGATGCCAGGTGTGGACAAGACGCCAGAAAACGC
CGTTTCTCCGAAGGAAACTACGCAAGGCCAACGGCGAAAGGGCGGCGGTA
TCCCGGGCGACAACATTGAGCTGCCCCGACGCCGATCACGAACTACCGTG
CGAGAAGGTGACTATGCTGCGGCTACGGCGACGAGCAGGAAGTGGAAGCC
GAACGTCAAGCGATCCCTAGAGTGGTTTCCCGTGCGTGGCCGACAGGTGT
TTCTCGTCGATCCTGGCGATGTTAACTTCGCCGCAGTTGCAGTTAACAAG
GCGGCAGAAGCGGGAGTCCTGTCAGCGACGGTTGCCCGAGCATGGAACAG
CCACTTACCTCACGGATGCGACTTTAGAACCGAAGGCCGGGGGGCTGGGG
GTGCAGACCAAAGCTTGGACAGGGGGTATACCGGCTTTCCCCGTCGGAAA
CCGTGGGAAGGAACTCACGACAAGGAAGCAGGCGCCGATGGAGAAGCTGC
TAAGCGGCCAGGGAGTGGGGATCCAAGACATTTGGAACAGAGGAGTGAAC
GTAGTGGCCACCAAGAGAAAACCAATCTGCAGACGGTAGGCTTCCCTTCC
GCGGCCCGCTTGGTCGATATGTTGCGTTCTCCACCAATAGAAAACAGGGA
CGCGACGGCGAGGCAAAGGAGTTGTCGTCGGCCACGCCCACGTTCCGGCG
CTGGCGGAACTCGGGGAAGCCACGACTCCGGTGGGTTGGTTTTGATGGGG
AGCTCCTCCACGTACCAACGGTCGGAAATCAAGCACGGGGAAAAGCCACT
TGGGGAGAGCACGCGGTGTAATAATGCGTTTGGGACATCAGCGACACCGG
AGGGCGGCCGATTGGCTTGCCTTTCCCCCAACGCATTGCGAGGAGGGAGG
GACGTGGACGCGAGGGGCTGGTCGGTCGAAGATGATCTCCATCGTGCTAC
ACGGCAAGTGAGAGATGCAGCAGCTTCAACGGCTGATTTATCTGCAAGCG
GGCAGGGCAGGGTACATCGGCTTTCTCATCGACGTGTGGGAAAAGGCCGT
CGCCCTACCGATGTGGAACAAAAGGGGACAAACGAGCTGGGCTTGATGCT
CGGACGGATGCATGGAGCTGGCAGGGGCCAACAACAACAAATTTTCGTTC
GCTCTGGTCAGGGGGTCGAGAGTATTGGCACCGCCAACGCAAGCAACAGC
AGTCGTTGTTCACAGGGACGTGGGACTACGACATGTCCAGTGGGTAGAGC
GCACGTTAGG
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