mRNA_P-fluviatile_contig13.1626.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1626.1
Unique NamemRNA_P-fluviatile_contig13.1626.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1626.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.810e-45
Identity = 105/214 (49.07%), Postives = 125/214 (58.41%), Query Frame = 1 
Query:    1 GDPRVDSRDLCYDPRGWWRHAPALIAPALTGVARLHRPARGYSAAGLPWGAGSLNEALEGCELDNELSLDPGQLSSAGGIRQATRDSINQRCAESRVDPCKISALATESRSSTKSLAASRPPEMETLGHSSVSTDFLGDRRPDSNTVCVFSADGSWDPVFVMAPPRLVGSQNRTAVRKRGRRKAWQAAWRRIDAPEAILAPRPMMPRCCSLPAP 642
            GD R+DSRDL YDPRGWW H PAL   A  G +RLHR +RG SA+GLP GAGSLNEALE  + D    +  G+ S  GG R+   DS       + V      A++TE  S+   L AS          S   +       P +N V VFSA+GSWDPVFV+APPRLVG QN+TA  + G R+A Q AW  ID  E  +APRP MPRC SL  P
Sbjct:  481 GDVRIDSRDLYYDPRGWWCHVPALAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPS--GGDREVIVDSSRNYTGSAPVSENFSPAVSTEP-STANGLTASSNAAAAPSNLSPTPSVLRIHLCPKNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAALRMGGRRARQVAWYHIDGSEVSVAPRPTMPRCTSLTMP 691
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BLAST of mRNA_P-fluviatile_contig13.1626.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.790e-45
Identity = 105/232 (45.26%), Postives = 131/232 (56.47%), Query Frame = 1 
Query:    1 GDPRVDSRDLCYDPRGWWRHAPALIAPALTGVARLHRPARGYSAAGLPWGAGSLNEALEGCELDNELSLDPGQLSSAGGIRQATRDSINQRCAESRVDPCKISALATESRSSTKSLAASRPPEMET------------------LGHSSVSTDFLGDRRPDSNTVCVFSADGSWDPVFVMAPPRLVGSQNRTAVRKRGRRKAWQAAWRRIDAPEAILAPRPMMPRCCSLPAP 642
            G+ R+DSRDL YDPRGWW H PA+   A  G +RLHR +RG SA+GLP GAGSLNEALE  + D    +  G+ S  GG R+   DS   R     + P     L+  + S+   ++ S  P + T                         +     R P++N V VFSA+GSWDPVFV+APPRLVG QN+TA R+ G R+A Q AW RID PE  +APRP MPRC SL  P
Sbjct:  384 GEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGKGDEPSQILNGRPS--GGDREVVVDS--SRNYTDLLLPSAAQQLSQPASSAAAPVSKSLSPAVSTEPSXXXXXXXXXXXXXXXXXXXXXXSVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSLRMP 611
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9X4_9PHAE2.810e-4549.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU7_ECTSI3.790e-4545.26Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:92380..93952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size710
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1626.1prot_P-fluviatile_contig13.1626.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 92380..93951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.223551-CDS-P-fluviatile_contig13:92379..926591622815539.223551-CDS-P-fluviatile_contig13:92379..92659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 92380..92659 +
1693562179.0473278-CDS-P-fluviatile_contig13:92379..926591693562179.0473278-CDS-P-fluviatile_contig13:92379..92659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 92380..92659 +
1622815539.234663-CDS-P-fluviatile_contig13:93079..933871622815539.234663-CDS-P-fluviatile_contig13:93079..93387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93080..93387 +
1693562179.0589738-CDS-P-fluviatile_contig13:93079..933871693562179.0589738-CDS-P-fluviatile_contig13:93079..93387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93080..93387 +
1622815539.2456377-CDS-P-fluviatile_contig13:93831..939511622815539.2456377-CDS-P-fluviatile_contig13:93831..93951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93832..93951 +
1693562179.0695112-CDS-P-fluviatile_contig13:93831..939511693562179.0695112-CDS-P-fluviatile_contig13:93831..93951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 93832..93951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1626.1

>prot_P-fluviatile_contig13.1626.1 ID=prot_P-fluviatile_contig13.1626.1|Name=mRNA_P-fluviatile_contig13.1626.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=236bp
GDPRVDSRDLCYDPRGWWRHAPALIAPALTGVARLHRPARGYSAAGLPWG
AGSLNEALEGCELDNELSLDPGQLSSAGGIRQATRDSINQRCAESRVDPC
KISALATESRSSTKSLAASRPPEMETLGHSSVSTDFLGDRRPDSNTVCVF
SADGSWDPVFVMAPPRLVGSQNRTAVRKRGRRKAWQAAWRRIDAPEAILA
PRPMMPRCCSLPAPANARVKCRPLLRQASLIPSASG
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mRNA from alignment at P-fluviatile_contig13:92380..93952+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1626.1 ID=mRNA_P-fluviatile_contig13.1626.1|Name=mRNA_P-fluviatile_contig13.1626.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1573bp|location=Sequence derived from alignment at P-fluviatile_contig13:92380..93952+ (Porterinema fluviatile SAG_2381)
GGTGACCCGCGTGTCGACTCCCGCGACCTCTGCTACGACCCCAGGGGTTG
GTGGAGACACGCCCCCGCTCTCATCGCGCCTGCTCTGACAGGGGTTGCTC
GACTGCACCGGCCGGCCCGCGGTTATTCCGCCGCAGGCCTGCCATGGGGC
GCTGGAAGCTTGAATGAGGCCTTGGAAGGATGTGAGCTAGACAACGAGCT
GTCATTGGACCCAGGCCAGCTCTCATCAGCTGGGGGCATTCGCCAAGCAA
CACGGGATTCGATAAATCAGCGCTGCGCTGGTCAGTGGGCAGAGGCTGAA
AGGGAAGGGAACAATTCGTAGATTGTCTGGTGATGTCAGCGCGCTTGACC
TATGGTGGGATCTCGAGATCGCGAGCGATAATGGGATGGTTGTTGCAACA
TTGAGACTGCATGTGTCGGTGCCAATAAGTGCACTCTTTGGGTGCACCAC
AAGATCCACAGCATCGCGCTCAGGAAGTCATGTAAAAATACCATTCAGTA
AATTACCAGACTGTGTCGTCCTCGTCGAATGTTTCGCAGCTTTGCCGGGG
TGTTAGCGCCCACGAACGACCTTAACGCAAAAATGGCTAAGGTAAACCAT
GCACCGGAGTCGAATATTGCATCCAGTAAGGGCGCTAACTCGGTTATCGC
TAAATCCTTGCTGTTCCCTGTCTCTACTCCCGCCCCTTTGCTTGATGCAG
AATCGCGTGTTGATCCGTGCAAGATATCCGCTCTTGCCACGGAATCACGT
TCATCAACCAAGTCTCTGGCAGCCAGCCGCCCGCCAGAGATGGAAACCTT
GGGCCACTCGTCGGTCTCAACGGATTTCCTCGGCGACCGCCGCCCCGACA
GCAACACCGTCTGCGTCTTCAGTGCGGACGGTTCGTGGGACCCCGTGTTT
GTCATGGCTCCCCCGAGGCTGGTAGGCTCCCAGAATAGAACGGCCGTGCG
AAAGAGGGGGCGGCGGAAGGCTTGGCAGGCTGCGTGGCGCCGAATCGACG
CACCAGAGGTGACTCAATAAACAACATAAGGAGCCGGAACTAAATTTGCA
GAGGCTCATTGGGTAATGCTCCGTCCGGCAAAAGAAATTCTCGCCCGAGG
GCTGCGAAGGGGGGGGACTTCCGCGAGGGCTTGTAGTTCGACAGAAAGTA
GCGCTCACGGCAAGGACCTGCGGGTTTCCGTTTTCAACGGCGATATAAAG
CCATGACAACTAAACTGAAGAATACCAAGCCAGGTCGGGTGGCGGGAATG
GGTCCCCCGACGGGCTGGGCCGCACTTAGGAGGGGGCACGTTACTTTGGT
GGCAGCATCATTTCATTTTGAAGAACGCATTTTAAACGTGATAGGCCGTC
TCCGTACCCATGTATGTTTGTATTTATGCAATTGACTTCGCTGTGAAGTC
GCTGTCAAACGTGAAATCGGCGTCGTGACTGTCCTCTCTTCATGCCCTGC
AGGCGATTTTGGCGCCTCGACCCATGATGCCTCGATGCTGCTCCCTTCCA
GCGCCCGCCAACGCACGGGTGAAATGTCGCCCTCTCCTCCGGCAAGCATC
CTTGATCCCTTCGGCCTCGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:92380..93952+

>mRNA_P-fluviatile_contig13.1626.1 ID=mRNA_P-fluviatile_contig13.1626.1|Name=mRNA_P-fluviatile_contig13.1626.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1416bp|location=Sequence derived from alignment at P-fluviatile_contig13:92380..93952+ (Porterinema fluviatile SAG_2381)
GGTGACCCGCGTGTCGACTCCCGCGACCTCTGCTACGACCCCAGGGGTTG
GTGGAGACACGCCCCCGCTCTCATCGCGCCTGCTCTGACAGGGGTTGCTC
GACTGCACCGGCCGGCCCGCGGTTATTCCGCCGCAGGCCTGCCATGGGGC
GCTGGAAGCTTGAATGAGGCCTTGGAAGGATGTGAGCTAGACAACGAGCT
GTCATTGGACCCAGGCCAGCTCTCATCAGCTGGGGGCATTCGCCAAGCAA
CACGGGATTCGATAAATCAGCGCTGCGCTGGGTGACCCGCGTGTCGACTC
CCGCGACCTCTGCTACGACCCCAGGGGTTGGTGGAGACACGCCCCCGCTC
TCATCGCGCCTGCTCTGACAGGGGTTGCTCGACTGCACCGGCCGGCCCGC
GGTTATTCCGCCGCAGGCCTGCCATGGGGCGCTGGAAGCTTGAATGAGGC
CTTGGAAGGATGTGAGCTAGACAACGAGCTGTCATTGGACCCAGGCCAGC
TCTCATCAGCTGGGGGCATTCGCCAAGCAACACGGGATTCGATAAATCAG
CGCTGCGCTGAATCGCGTGTTGATCCGTGCAAGATATCCGCTCTTGCCAC
GGAATCACGTTCATCAACCAAGTCTCTGGCAGCCAGCCGCCCGCCAGAGA
TGGAAACCTTGGGCCACTCGTCGGTCTCAACGGATTTCCTCGGCGACCGC
CGCCCCGACAGCAACACCGTCTGCGTCTTCAGTGCGGACGGTTCGTGGGA
CCCCGTGTTTGTCATGGCTCCCCCGAGGCTGGTAGGCTCCCAGAATAGAA
CGGCCGTGCGAAAGAGGGGGCGGCGGAAGGCTTGGCAGGCTGCGTGGCGC
CGAATCGACGCACCAGAGAATCGCGTGTTGATCCGTGCAAGATATCCGCT
CTTGCCACGGAATCACGTTCATCAACCAAGTCTCTGGCAGCCAGCCGCCC
GCCAGAGATGGAAACCTTGGGCCACTCGTCGGTCTCAACGGATTTCCTCG
GCGACCGCCGCCCCGACAGCAACACCGTCTGCGTCTTCAGTGCGGACGGT
TCGTGGGACCCCGTGTTTGTCATGGCTCCCCCGAGGCTGGTAGGCTCCCA
GAATAGAACGGCCGTGCGAAAGAGGGGGCGGCGGAAGGCTTGGCAGGCTG
CGTGGCGCCGAATCGACGCACCAGAGGCGATTTTGGCGCCTCGACCCATG
ATGCCTCGATGCTGCTCCCTTCCAGCGCCCGCCAACGCACGGGTGAAATG
TCGCCCTCTCCTCCGGCAAGCATCCTTGATCCCTTCGGCCTCGGGGGCGA
TTTTGGCGCCTCGACCCATGATGCCTCGATGCTGCTCCCTTCCAGCGCCC
GCCAACGCACGGGTGAAATGTCGCCCTCTCCTCCGGCAAGCATCCTTGAT
CCCTTCGGCCTCGGGG
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