mRNA_P-fluviatile_contig13.1624.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1624.1
Unique NamemRNA_P-fluviatile_contig13.1624.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1624.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.410e-6
Identity = 33/84 (39.29%), Postives = 40/84 (47.62%), Query Frame = 1 
Query:    4 TWNNSSLMNFKSQRQWNDGRTSNSGGQPCVRSNGVAIHTKARNNHHQEHTSEAFGCGSGFAGLETQGRRVREFYENVVWKLPSR 255
            TWN SS    K+       R  NS     + S    +  K    HH     +   C SGF  LETQG   ++FYENVVWK+PSR
Sbjct:  143 TWNQSSPKRDKT-------RDKNSS--TAIASPSSIVVVKDAGRHHPPQKQKESACKSGFVDLETQGHLTQDFYENVVWKIPSR 217
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BLAST of mRNA_P-fluviatile_contig13.1624.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.100e-5
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   61 RTSNSGGQPCVRSNGVAIHTKARNNHHQEHTSEAFGCGSGFAGLETQGRRVREFYENVVWKLPSR 255
            +T +  G   + S    +  K    HH     +A    SGF  LETQG   ++FYENVVWK+PSR
Sbjct:  153 KTRDKDGSTAIASPSSIVVVKDVGRHHPSQKQKASAYKSGFVDLETQGHLTQDFYENVVWKIPSR 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNU7_ECTSI4.410e-639.29Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5J9X4_9PHAE2.100e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:88716..89395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1624.1prot_P-fluviatile_contig13.1624.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 88740..89395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.132577-UTR-P-fluviatile_contig13:88715..887391622815539.132577-UTR-P-fluviatile_contig13:88715..88739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 88716..88739 +
1693562179.004874-UTR-P-fluviatile_contig13:88715..887391693562179.004874-UTR-P-fluviatile_contig13:88715..88739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 88716..88739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.1433203-CDS-P-fluviatile_contig13:88739..889691622815539.1433203-CDS-P-fluviatile_contig13:88739..88969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 88740..88969 +
1693562179.0250313-CDS-P-fluviatile_contig13:88739..889691693562179.0250313-CDS-P-fluviatile_contig13:88739..88969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 88740..88969 +
1622815539.1535048-CDS-P-fluviatile_contig13:89352..893951622815539.1535048-CDS-P-fluviatile_contig13:89352..89395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 89353..89395 +
1693562179.0378785-CDS-P-fluviatile_contig13:89352..893951693562179.0378785-CDS-P-fluviatile_contig13:89352..89395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 89353..89395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1624.1

>prot_P-fluviatile_contig13.1624.1 ID=prot_P-fluviatile_contig13.1624.1|Name=mRNA_P-fluviatile_contig13.1624.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=91bp
MNFKSQRQWNDGRTSNSGGQPCVRSNGVAIHTKARNNHHQEHTSEAFGCG
SGFAGLETQGRRVREFYENVVWKLPSRTGSAETFRLSTLLS
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mRNA from alignment at P-fluviatile_contig13:88716..89395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1624.1 ID=mRNA_P-fluviatile_contig13.1624.1|Name=mRNA_P-fluviatile_contig13.1624.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=680bp|location=Sequence derived from alignment at P-fluviatile_contig13:88716..89395+ (Porterinema fluviatile SAG_2381)
CAAACGTGGAATAACTCGTCTTTGATGAACTTCAAATCACAGCGACAATG
GAACGACGGTCGTACAAGCAATTCAGGTGGCCAACCCTGTGTTCGGTCGA
ATGGCGTTGCCATTCATACCAAAGCGCGCAATAATCATCACCAAGAGCAT
ACAAGTGAGGCGTTCGGTTGTGGATCTGGGTTTGCGGGCTTGGAAACGCA
AGGTCGCAGGGTGCGCGAGTTCTACGAGAACGTCGTATGGAAGCTTCCAT
CCAGGTAAAGTCTGTAAACAATGGAAAAGGGTGGCCTCACTTCGTGAATG
AATGCATTTGTACTCAACAGAGGCGGGTTCTTCCAATCTGGTCGAAGGGT
GCAGCGCTAGCTGCAAAAGTATCCGCAGGTCGGGTAAAACCGACAGTATT
CTTTCTATCCGGAGGATTGCTCTTCACAAGGTACCATCAAGGGGCAGTTC
TCGAAACTCCGTCGGTTCCCTTCGATTCCCTCGCCCGATCGTCCCTTCTC
CACCGCACCGCGGCAGGAGAGTTCTTCCACAAACGGCAAAGCGCATAACC
GCGAAATATTCCGGGGCTCAAGCAATCAAACAAGGATCTCATGCTCACCA
AAAAGTTATTCGAACGCCTGTTTCCAAAAAAATCAAGGACGGGTTCGGCA
GAAACGTTTCGGCTCTCCACGCTCCTCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:88716..89395+

>mRNA_P-fluviatile_contig13.1624.1 ID=mRNA_P-fluviatile_contig13.1624.1|Name=mRNA_P-fluviatile_contig13.1624.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=546bp|location=Sequence derived from alignment at P-fluviatile_contig13:88716..89395+ (Porterinema fluviatile SAG_2381)
ATGAACTTCAAATCACAGCGACAATGGAACGACGGTCGTACAAGCAATTC
AGGTGGCCAACCCTGTGTTCGGTCGAATGGCGTTGCCATTCATACCAAAG
CGCGCAATAATCATCACCAAGAGCATACAAGTGAGGCGTTCGGTTGTGGA
TCTGGGTTTGCGGGCTTGGAAACGCAAGGTCGCAGGGTGCGCGAGTTCTA
CGAGAACGTCGTATGGAAGCTTCCATCCAGATGAACTTCAAATCACAGCG
ACAATGGAACGACGGTCGTACAAGCAATTCAGGTGGCCAACCCTGTGTTC
GGTCGAATGGCGTTGCCATTCATACCAAAGCGCGCAATAATCATCACCAA
GAGCATACAAGTGAGGCGTTCGGTTGTGGATCTGGGTTTGCGGGCTTGGA
AACGCAAGGTCGCAGGGTGCGCGAGTTCTACGAGAACGTCGTATGGAAGC
TTCCATCCAGGACGGGTTCGGCAGAAACGTTTCGGCTCTCCACGCTCCTC
AGCGACGGGTTCGGCAGAAACGTTTCGGCTCTCCACGCTCCTCAGC
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