mRNA_P-fluviatile_contig13.1619.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1619.1
Unique NamemRNA_P-fluviatile_contig13.1619.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1619.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-5
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:    3 CENVNKLLVGNKSDLEAKRAVTTEEAKV 86
            CENVNKLLVGNKSDLEAKRAVTTEEAK 
Sbjct:  111 CENVNKLLVGNKSDLEAKRAVTTEEAKA 138
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BLAST of mRNA_P-fluviatile_contig13.1619.1 vs. uniprot
Match: A0A836CKR4_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.540e-5
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:    3 CENVNKLLVGNKSDLEAKRAVTTEEAK 83
            CENVNKLLVGNKSDLEAKRAVTTEEAK
Sbjct:  111 CENVNKLLVGNKSDLEAKRAVTTEEAK 137
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BLAST of mRNA_P-fluviatile_contig13.1619.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.360e-5
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    3 CENVNKLLVGNKSDLEAKRAVTTEEAK 83
            CENVNKLLVGNKSDLEAKRAVTTEE K
Sbjct:  111 CENVNKLLVGNKSDLEAKRAVTTEEGK 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNV2_ECTSI1.130e-596.43Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CKR4_9STRA1.540e-5100.00Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
A0A835YQS3_9STRA5.360e-596.30Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:36906..37694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1619.1prot_P-fluviatile_contig13.1619.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 37023..37508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.7867477-UTR-P-fluviatile_contig13:36905..370221622815536.7867477-UTR-P-fluviatile_contig13:36905..37022Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 36906..37022 +
1693562173.0501757-UTR-P-fluviatile_contig13:36905..370221693562173.0501757-UTR-P-fluviatile_contig13:36905..37022Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 36906..37022 +
1622815536.816565-UTR-P-fluviatile_contig13:37508..376941622815536.816565-UTR-P-fluviatile_contig13:37508..37694Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 37509..37694 +
1693562173.3528333-UTR-P-fluviatile_contig13:37508..376941693562173.3528333-UTR-P-fluviatile_contig13:37508..37694Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 37509..37694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.8028982-CDS-P-fluviatile_contig13:37022..375081622815536.8028982-CDS-P-fluviatile_contig13:37022..37508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 37023..37508 +
1693562173.345365-CDS-P-fluviatile_contig13:37022..375081693562173.345365-CDS-P-fluviatile_contig13:37022..37508Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 37023..37508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1619.1

>prot_P-fluviatile_contig13.1619.1 ID=prot_P-fluviatile_contig13.1619.1|Name=mRNA_P-fluviatile_contig13.1619.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
MGREGILGIRHAKEEGKARAEGRRDDPTTLTKLQMVAEQRLVPNIGLHFP
FQQEISDGSSPFLFADGPFDTSFPLGNLNMMTRLAVMNGETIAHQNLSRA
CISILEVMTPTIIGSVSLEVEAGLGSSRAVWLDCLTMVPKCEAETFVSLE
RAHAWQGTSYV*
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mRNA from alignment at P-fluviatile_contig13:36906..37694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1619.1 ID=mRNA_P-fluviatile_contig13.1619.1|Name=mRNA_P-fluviatile_contig13.1619.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=789bp|location=Sequence derived from alignment at P-fluviatile_contig13:36906..37694+ (Porterinema fluviatile SAG_2381)
CATGCGAAAACGTGAACAAGTTGCTGGTGGGTAACAAGAGCGATCTCGAG
GCTAAGCGCGCGGTCACGACGGAGGAGGCCAAGGTGAGAGGATGAGGCAA
TCAAAAGCAGGGGAGCGATGGGAAGGGAAGGAATACTAGGAATACGTCAC
GCGAAAGAAGAAGGCAAGGCAAGGGCAGAGGGCAGACGAGATGACCCCAC
GACACTGACGAAGCTCCAAATGGTGGCCGAGCAGCGCCTGGTACCAAACA
TCGGGCTTCATTTTCCATTTCAGCAGGAGATAAGTGATGGTTCGTCACCT
TTTCTTTTCGCCGACGGACCGTTTGATACATCCTTCCCTCTCGGCAACTT
GAATATGATGACGCGTCTCGCGGTGATGAACGGAGAGACTATTGCGCATC
AGAACCTGTCTCGGGCATGCATATCAATCCTTGAGGTGATGACCCCGACA
ATAATCGGTAGTGTGTCACTGGAGGTCGAAGCGGGGCTGGGCAGTTCTCG
GGCGGTTTGGCTTGACTGCCTTACGATGGTCCCCAAATGCGAGGCAGAGA
CTTTCGTCTCTCTCGAACGTGCGCATGCTTGGCAGGGTACCTCTTACGTT
TGAACGCTTGAGGTTTTATTGTGCACAGAAAAGTCCGGGCCCCGTTGGTC
AGCGGAAGCTGGAACTCTCGAGCGGCAATCCATGTGCACCCGTACGTAGT
AATCGAAGAGCGGCAGCATGTCCATTTCTTGCTCCTTCGGTTTTCACAAC
GTCGATGTTGATTTTTTTTTAACAGTTTGGAATACGCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:36906..37694+

>mRNA_P-fluviatile_contig13.1619.1 ID=mRNA_P-fluviatile_contig13.1619.1|Name=mRNA_P-fluviatile_contig13.1619.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=972bp|location=Sequence derived from alignment at P-fluviatile_contig13:36906..37694+ (Porterinema fluviatile SAG_2381)
ATGGGAAGGGAAGGAATACTAGGAATACGTCACGCGAAAGAAGAAGGCAA
GGCAAGGGCAGAGGGCAGACGAGATGACCCCACGACACTGACGAAGCTCC
AAATGGTGGCCGAGCAGCGCCTGGTACCAAACATCGGGCTTCATTTTCCA
TTTCAGCAGGAGATAAGTGATGGTTCGTCACCTTTTCTTTTCGCCGACGG
ACCGTTTGATACATCCTTCCCTCTCGGCAACTTGAATATGATGACGCGTC
TCGCGGTGATGAACGGAGAGACTATTGCGCATCAGAACCTGTCTCGGGCA
TGCATATCAATCCTTGAGGTGATGACCCCGACAATAATCGGTAGTGTGTC
ACTGGAGGTCGAAGCGGGGCTGGGCAGTTCTCGGGCGGTTTGGCTTGACT
GCCTTACGATGGTCCCCAAATGCGAGGCAGAGACTTTCGTCTCTCTCGAA
CGTGCGCATGCTTGGCAGGGTACCTCTTACGTTTGAATGGGAAGGGAAGG
AATACTAGGAATACGTCACGCGAAAGAAGAAGGCAAGGCAAGGGCAGAGG
GCAGACGAGATGACCCCACGACACTGACGAAGCTCCAAATGGTGGCCGAG
CAGCGCCTGGTACCAAACATCGGGCTTCATTTTCCATTTCAGCAGGAGAT
AAGTGATGGTTCGTCACCTTTTCTTTTCGCCGACGGACCGTTTGATACAT
CCTTCCCTCTCGGCAACTTGAATATGATGACGCGTCTCGCGGTGATGAAC
GGAGAGACTATTGCGCATCAGAACCTGTCTCGGGCATGCATATCAATCCT
TGAGGTGATGACCCCGACAATAATCGGTAGTGTGTCACTGGAGGTCGAAG
CGGGGCTGGGCAGTTCTCGGGCGGTTTGGCTTGACTGCCTTACGATGGTC
CCCAAATGCGAGGCAGAGACTTTCGTCTCTCTCGAACGTGCGCATGCTTG
GCAGGGTACCTCTTACGTTTGA
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