mRNA_P-fluviatile_contig12.1608.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1608.1
Unique NamemRNA_P-fluviatile_contig12.1608.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5KNY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.370e-47
Identity = 105/161 (65.22%), Postives = 121/161 (75.16%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  ED +RS EE+ ALR ++ +LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DRG A ESA A +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q  Y SA G  G AVGFGYGATTPA GYQSVRY
Sbjct:    4 RKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKREEPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQ-DYSSAMGDGGAAVGFGYGATTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5LCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCX0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 5.170e-47
Identity = 103/161 (63.98%), Postives = 121/161 (75.16%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R++G DSS DS  ED +RS EE+ AL  ++G+LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DRG A ESA   +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q  Y SA G  G AVGFGYGATTPA GYQSVRY
Sbjct:    4 RSNGGDSSSDSAAEDRKRSREELVALTTQVGSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAPESTNAEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQ-EYCSAMGDDGAAVGFGYGATTPAMGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5K761_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K761_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 9.280e-45
Identity = 99/161 (61.49%), Postives = 118/161 (73.29%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  ED +R  EE+ ALR ++ +LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DRG A ESA A +  AEGGAP  GSA+D  Y REP RE GPSGRH+GEAGGF P+EVR+AAAH+Q +Y  A G  G AVGFGYG TTPA GYQSVRY
Sbjct:    4 RKDGGDSSSDSAAEDRKRPREELVALRTQVCSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLREPIREYGPSGRHTGEAGGFVPQEVRIAAAHNQ-NYSRAMGDGGGAVGFGYGTTTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5L8M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.250e-44
Identity = 100/159 (62.89%), Postives = 114/159 (71.70%), Query Frame = -1
Query:    1 DGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 471
            DG DSS DS  ED +RS EE+ ALR ++ +LT+Q GQL+ LV+ +M+    EEPAGT +G  D G A ESA A +  AE GAP  GSA+D  Y REP RE GPSGRHSGEAGGF P+EVRVAAAH Q  Y SA    G AVGFGYGATTPA GYQSVRY
Sbjct:    6 DGGDSSSDSAAEDRKRSREELVALRTQVNSLTDQTGQLMSLVEDTMKTSNKEEPAGTMEGAADLGDARESAAAESTNAEVGAPWTGSAQDGRYLREPVRECGPSGRHSGEAGGFVPQEVRVAAAHHQ-DYSSAMEDGGAAVGFGYGATTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5L0N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.040e-44
Identity = 103/161 (63.98%), Postives = 117/161 (72.67%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  ED +RS EE+ ALR +  +LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DR  A ESA A +  AEGGAP  GSA+D  Y REP RESGPS RHSGEAGGF P+EVRVAAAH QG Y S  G  G AVGFGYGATTPA GYQSVRY
Sbjct:    4 RKDGGDSSSDSAAEDRKRSREELVALRTQGSSLTDQMSQLISLVEDTMKASKKEEPAGTMEGAADRRDAMESAAAESTNAEGGAPWTGSAQDGRYLREPVRESGPSERHSGEAGGFVPQEVRVAAAHIQG-YCSVTGDGGAAVGFGYGATTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.190e-43
Identity = 104/161 (64.60%), Postives = 120/161 (74.53%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  ED +RS EE+ ALR ++ +LT+Q+ QL+ LV+ +M+A   E PAGT +G  DRG A ESA A +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q  Y SA G  G AVGFGYGATTPA GYQSVRY
Sbjct:    4 RKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKKEGPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQ-DYSSAMGDGGAAVGFGYGATTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5KG88_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG88_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.590e-43
Identity = 103/161 (63.98%), Postives = 120/161 (74.53%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            RNDG DSS DS  ED +RS EE+ ALR ++ +LT+Q+ QL+ LV+ + +A   EEPAGT +G  DRG A ESA   +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVR+AAAH+Q  Y SA G  G AVGFGYGATTPA GYQSVRY
Sbjct:    4 RNDGGDSSNDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTTEASKKEEPAGTMEGAADRGDARESAAVESTNAEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRLAAAHNQ-DYCSAMGDGGAAVGFGYGATTPATGYQSVRY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5KE03_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE03_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.480e-42
Identity = 101/161 (62.73%), Postives = 117/161 (72.67%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  ED +RS EE+ ALR ++ +LT+Q+ QL  LV+ +M+A   EEPA T +G  D G A ESA A +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q  Y SA G    AVGFG+GATTPA GYQSVRY
Sbjct:    4 RTDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLRSLVEDTMKASKKEEPARTMEGAADCGDARESAAAESTNAEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQ-DYSSAMGD--GAVGFGHGATTPATGYQSVRY 161          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5KUM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.240e-41
Identity = 100/161 (62.11%), Postives = 117/161 (72.67%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG DSS DS  +D +RS EE+ ALR ++ +LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DRG A ESA A +  AEGGAP  GSA+D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q    SA G  G AVG GY ATTPA GYQS RY
Sbjct:    4 RKDGGDSSSDSAAQDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPWIGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQDCR-SAMGDGGAAVGLGYEATTPATGYQSARY 163          
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Match: A0A6H5KG71_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG71_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.150e-41
Identity = 100/161 (62.11%), Postives = 117/161 (72.67%), Query Frame = -1
Query:    1 RNDGDDSSRDSVVED-ERSTEEVSALRREIGTLTEQVGQLLLLVQGSMQARMTEEPAGTTDGVTDRGGATESAGAGAAGAEGGAPRPGSARDETYPREPFRESGPSGRHSGEAGGFDPREVRVAAAHSQGSYGSAPGGVGTAVGFGYGATTPA-GYQSVRY 477
            R DG D S DS  ++ +RS EE+ ALR +  +LT+Q+ QL+ LV+ +M+A   EEPAGT +G  DRG A ESA A +  AEGGAP  GS +D  Y REP RESGPSGRHSGEAGGF P+EVRVAAAH+Q  Y SA G    AVGFGYGATTPA GYQSVRY
Sbjct:    4 RKDGGDPSSDSAADNRKRSREELVALRTQDSSLTDQMSQLMSLVEDTMKASKEEEPAGTMEGAADRGDAWESAAAESTNAEGGAPWTGSVQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQ-DYSSAMGDGAAAVGFGYGATTPATGYQSVRY 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNY4_9PHAE1.370e-4765.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LCX0_9PHAE5.170e-4763.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K761_9PHAE9.280e-4561.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8M7_9PHAE6.250e-4462.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0N1_9PHAE7.040e-4463.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0G8_9PHAE1.190e-4364.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG88_9PHAE1.590e-4363.98CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KE03_9PHAE1.480e-4262.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUM2_9PHAE1.240e-4162.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG71_9PHAE7.150e-4162.11CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3494933..3495409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.882242-CDS-P-fluviatile_contig12:3494932..34952861622815490.882242-CDS-P-fluviatile_contig12:3494932..3495286Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3494933..3495286 +
1693562048.6388366-CDS-P-fluviatile_contig12:3494932..34952861693562048.6388366-CDS-P-fluviatile_contig12:3494932..3495286Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3494933..3495286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.894378-UTR-P-fluviatile_contig12:3495286..34954091622815490.894378-UTR-P-fluviatile_contig12:3495286..3495409Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3495287..3495409 +
1693562048.6551309-UTR-P-fluviatile_contig12:3495286..34954091693562048.6551309-UTR-P-fluviatile_contig12:3495286..3495409Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3495287..3495409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1608.1prot_P-fluviatile_contig12.1608.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3494933..3495286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1608.1

>prot_P-fluviatile_contig12.1608.1 ID=prot_P-fluviatile_contig12.1608.1|Name=mRNA_P-fluviatile_contig12.1608.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=118bp
VPYTLVPRRGGGSISKTYSSAHSSRGTTITSLTVSSGYSHLSGVETPCFA
AVSPRRTRLSKRFARVRLVPRTPRPRCPSFGSRSSRAGALRSAAAISDTI
RGASWLLRHACLHAALD*
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mRNA from alignment at P-fluviatile_contig12:3494933..3495409+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1608.1 ID=mRNA_P-fluviatile_contig12.1608.1|Name=mRNA_P-fluviatile_contig12.1608.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=477bp|location=Sequence derived from alignment at P-fluviatile_contig12:3494933..3495409+ (Porterinema fluviatile SAG_2381)
GTACCGTACACTTTGGTACCCCGCAGGGGTGGTGGCTCCATATCCAAAAC CTACAGCAGTGCCCACTCCTCCCGGGGCACTACCATAACTTCCCTGACTG TGAGCAGCGGCTACTCTCACCTCTCGGGGGTCGAAACCCCCTGCTTCGCC GCTGTGTCGCCCCGAAGGACCAGACTCTCGAAAAGGTTCGCGCGGGTACG TCTCGTCCCGCGCACTCCCAGGCCGCGGTGCCCCTCCTTCGGCTCCCGCA GCTCCCGCGCCGGCGCTCTCCGTAGCGCCGCCGCGATCAGTGACACCATC CGTGGTGCCAGCTGGCTCCTCCGTCATGCGTGCCTGCATGCTGCCTTGGA CTAGCAGCAGGAGCTGGCCCACTTGTTCTGTCAGCGTGCCAATTTCCCTC CTGAGAGCCGATACTTCTTCTGTCGACCTCTCATCTTCCACCACAGAATC GCGTGAGGAATCATCCCCATCATTGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3494933..3495409+

>mRNA_P-fluviatile_contig12.1608.1 ID=mRNA_P-fluviatile_contig12.1608.1|Name=mRNA_P-fluviatile_contig12.1608.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=708bp|location=Sequence derived from alignment at P-fluviatile_contig12:3494933..3495409+ (Porterinema fluviatile SAG_2381)
GTACCGTACACTTTGGTACCCCGCAGGGGTGGTGGCTCCATATCCAAAAC
CTACAGCAGTGCCCACTCCTCCCGGGGCACTACCATAACTTCCCTGACTG
TGAGCAGCGGCTACTCTCACCTCTCGGGGGTCGAAACCCCCTGCTTCGCC
GCTGTGTCGCCCCGAAGGACCAGACTCTCGAAAAGGTTCGCGCGGGTACG
TCTCGTCCCGCGCACTCCCAGGCCGCGGTGCCCCTCCTTCGGCTCCCGCA
GCTCCCGCGCCGGCGCTCTCCGTAGCGCCGCCGCGATCAGTGACACCATC
CGTGGTGCCAGCTGGCTCCTCCGTCATGCGTGCCTGCATGCTGCCTTGGA
CTAGGTACCGTACACTTTGGTACCCCGCAGGGGTGGTGGCTCCATATCCA
AAACCTACAGCAGTGCCCACTCCTCCCGGGGCACTACCATAACTTCCCTG
ACTGTGAGCAGCGGCTACTCTCACCTCTCGGGGGTCGAAACCCCCTGCTT
CGCCGCTGTGTCGCCCCGAAGGACCAGACTCTCGAAAAGGTTCGCGCGGG
TACGTCTCGTCCCGCGCACTCCCAGGCCGCGGTGCCCCTCCTTCGGCTCC
CGCAGCTCCCGCGCCGGCGCTCTCCGTAGCGCCGCCGCGATCAGTGACAC
CATCCGTGGTGCCAGCTGGCTCCTCCGTCATGCGTGCCTGCATGCTGCCT
TGGACTAG
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