mRNA_P-fluviatile_contig12.1607.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1607.1
Unique NamemRNA_P-fluviatile_contig12.1607.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.370e-29
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E+Q F AEV  SGSSQP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK
Sbjct:   82 VLGPEQQTFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 145
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.150e-27
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E+QAF AEV  SGS QP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK
Sbjct:  414 VLGPEQQAFGAEVDASGSPQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 477
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.190e-26
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = -3 
Query:    2 LGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 190
            LG E+QAF AEV  SGSSQP PDPQL P RDDEPAV+KPVREAIGCLMWTKLTRPDI LPLNK
Sbjct:    5 LGPEQQAFGAEVDASGSSQPLPDPQLRPTRDDEPAVEKPVREAIGCLMWTKLTRPDITLPLNK 67
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.830e-26
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E+QAF AEV  SGSSQP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTR DIA+P NK
Sbjct:   65 VLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRLDIAVPRNK 128
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5L002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L002_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.910e-26
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG+E+QAF  EV  SGSSQP PDPQL PKRDDEPAVD  VREAIGCLMWTKLTRPDIAL LNK
Sbjct:   12 VLGQEQQAFGVEVDASGSSQPLPDPQLRPKRDDEPAVDTSVREAIGCLMWTKLTRPDIALSLNK 75
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BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.120e-25
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E+QAF AEV  SGSSQP PDPQL PKRDDE AVDKPVREAIGCLMWTKLTRPDIA+P NK
Sbjct:  227 VLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLMWTKLTRPDIAVPRNK 290
[Close]
BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5KUU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.190e-24
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VL  ++QAF AEV  SG SQP PDPQL P RDDEPAVDKPVREAIGCLMWTKLTRP IALPLNK
Sbjct:   12 VLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDKPVREAIGCLMWTKLTRPAIALPLNK 75
[Close]
BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5L5V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.630e-24
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E++ F AEV  SG SQ  PDPQL PK DD+PAVDKPVREAIGCLMWTKLTRPDIALPLNK
Sbjct:  183 VLGPEQEVFGAEVDASGPSQSLPDPQLRPKIDDQPAVDKPVREAIGCLMWTKLTRPDIALPLNK 246
[Close]
BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5JLR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.730e-23
Identity = 53/69 (76.81%), Postives = 53/69 (76.81%), Query Frame = -3 
Query:    2 QAFEAEVGGSGSSQPQPDPQLGPKRD-----------DEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 175
            QAF AEV  SGSSQP PDPQL PKRD           DEPAVDKPVREAIGCLMWTKLTRPDIALPLNK
Sbjct:  115 QAFGAEVDASGSSQPLPDPQLRPKRDMERACADHVLGDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 183
[Close]
BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Match: A0A6H5JNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.180e-19
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 193
            VLG E+QAF  EV     S      + GPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK
Sbjct:   64 VLGPEQQAFGVEVDXPNISNRCKHVRQGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNK 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L519_9PHAE9.370e-2987.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5G4_9PHAE7.150e-2787.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE2.190e-2684.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW61_9PHAE3.830e-2684.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L002_9PHAE3.910e-2682.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS2_9PHAE4.120e-2584.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU2_9PHAE1.190e-2481.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5V1_9PHAE5.630e-2479.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLR7_9PHAE9.730e-2376.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNQ6_9PHAE1.180e-1973.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3490611..3491691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.8629498-CDS-P-fluviatile_contig12:3490610..34907251622815488.8629498-CDS-P-fluviatile_contig12:3490610..3490725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3490611..3490725 +
1693562047.0931597-CDS-P-fluviatile_contig12:3490610..34907251693562047.0931597-CDS-P-fluviatile_contig12:3490610..3490725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3490611..3490725 +
1622815488.877668-CDS-P-fluviatile_contig12:3491610..34916901622815488.877668-CDS-P-fluviatile_contig12:3491610..3491690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3491611..3491690 +
1693562047.1078756-CDS-P-fluviatile_contig12:3491610..34916901693562047.1078756-CDS-P-fluviatile_contig12:3491610..3491690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3491611..3491690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1607.1prot_P-fluviatile_contig12.1607.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3490611..3491690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1607.1

>prot_P-fluviatile_contig12.1607.1 ID=prot_P-fluviatile_contig12.1607.1|Name=mRNA_P-fluviatile_contig12.1607.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
AYSEAGRCLASSASSTSGIRLPPSPVYPPRARHLSLALAAGLVEVAKTRC
RRPRPRMPAPPRPTP
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mRNA from alignment at P-fluviatile_contig12:3490611..3491691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1607.1 ID=mRNA_P-fluviatile_contig12.1607.1|Name=mRNA_P-fluviatile_contig12.1607.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1081bp|location=Sequence derived from alignment at P-fluviatile_contig12:3490611..3491691+ (Porterinema fluviatile SAG_2381)
GCTTATTCAGAGGCAGGGCGATGTCTGGCCTCGTCAGCTTCGTCCACATC
AGGCATCCGATTGCCTCCCTCACCGGTTTATCCACCGCGGGCTCGTCATC
TCTCTTTGGCCCTAGGTCGGCATCGGTGGCAGCAGGGGTGAAAGCGGTTG
TGGTCACATCAAACCGCTTCAGCATGCTCTCGATGTACGCTGTTTGCGAA
AGCTTGGTGATGCCGTTCTCTACATCCATCTCAATCGCACACCCGTCATA
CCACGTGCAGTCCCCCAAATCCTTCACCGGGAACTTCTTGTTGAGGGATG
CGAACAACTCCTTTCGCTCTCCCTCGTCTGCCGCCACCAAGATGTCATCA
ACGTAGATCACAATCAGACCTACGACCTCTCCATCCACCATCTTACGGAA
GACACACGGGTCAGCCCTGCACTGCTCGTACAAGTACCCATTTTCGATGA
GGGCATCAGCAGCTTCAAACCCCCACTCTCGACCACTCTGCTTCAGACCA
TACAGGGCACGCTCAACCTTGACCACCTTGCCAGACATGCTACTACACCC
TTCCGGAAGCCTGAGGTATATCTCCTCTTTCAGTTTGGCGTGGATGTATG
CTTGCTTAACATCCCAGTGGGCAACTTTCTTGCCCTTCTCGTTGGTTACG
GCTATCACCGACTTGATAGACGATGCAGCTGGGCATGCATACGATGAATG
GTGGTAGTCTATTCCGGGGATTTGCGAGAAACCCCGTGCAACCAAACGGG
CCTTAAAGTCAGTTATCAGACCCTTCTCGTTCGTCTTCCACGAGAATATC
CACTTTGAACCTATGGCCTTCCGCCCCTCGGGCAGCCCTTTGACCTTCGT
GAATGTCCCGACCTTGTTTTGACCATCTATCTCTTTCTTCATGGCCGCAT
CCCAGAAAACCTTGTACTTCGAACACGTCACATCCTTGTACGTCATCGGT
AACGCTTCCACATCACACGGTTTCTGCCCGATTGGCGAGGGTATACTTAG
CTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGGCCT
CGAATGCCTGCTCCTCCTCGCCCAACACCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3490611..3491691+

>mRNA_P-fluviatile_contig12.1607.1 ID=mRNA_P-fluviatile_contig12.1607.1|Name=mRNA_P-fluviatile_contig12.1607.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig12:3490611..3491691+ (Porterinema fluviatile SAG_2381)
GCTTATTCAGAGGCAGGGCGATGTCTGGCCTCGTCAGCTTCGTCCACATC
AGGCATCCGATTGCCTCCCTCACCGGTTTATCCACCGCGGGCTCGTCATC
TCTCTTTGGCCCTAGGCTTATTCAGAGGCAGGGCGATGTCTGGCCTCGTC
AGCTTCGTCCACATCAGGCATCCGATTGCCTCCCTCACCGGTTTATCCAC
CGCGGGCTCGTCATCTCTCTTTGGCCCTAGCTGCGGGTCTGGTTGAGGTT
GCGAAGACCCGCTGCCGCCGACCTCGGCCTCGAATGCCTGCTCCTCCTCG
CCCAACACCTCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCG
ACCTCGGCCTCGAATGCCTGCTCCTCCTCGCCCAACACCT
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