mRNA_P-fluviatile_contig12.1605.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1605.1
Unique NamemRNA_P-fluviatile_contig12.1605.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1605.1 vs. uniprot
Match: A0A6H5KG60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG60_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.610e-11
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = -2 
Query:    2 LTGTAVILDCLYCTQGGRIVISHPKGAANVDMQRRSNPILVPNRLPTAA 148
            L+G A +L      +GG+IVISHPKGAANV+MQRRSNP+LVPNRLPTAA
Sbjct:  125 LSGAAKLLK-----EGGKIVISHPKGAANVNMQRRSNPLLVPNRLPTAA 168
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BLAST of mRNA_P-fluviatile_contig12.1605.1 vs. uniprot
Match: D8LBL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.070e-10
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:    2 QGGRIVISHPKGAANVDMQRRSNPILVPNRLPTAA 106
            +GG+IVISHPKGAANVDMQRRSNP+LVPNRLPTAA
Sbjct:  331 EGGKIVISHPKGAANVDMQRRSNPLLVPNRLPTAA 365
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BLAST of mRNA_P-fluviatile_contig12.1605.1 vs. uniprot
Match: A0A7S1FWZ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWZ0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.230e-5
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:    5 CTQGGRIVISHPKGAANVDMQRRSNPILVPNRLPTA 112
            C +GGRIVI+HP+GA++V MQ R NPI+V N+LP A
Sbjct:  359 CNRGGRIVITHPRGASHVQMQNRKNPIMVRNQLPDA 394
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KG60_9PHAE8.610e-1171.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBL1_ECTSI1.070e-1091.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1FWZ0_9STRA3.230e-563.89Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3466922..3467439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1605.1prot_P-fluviatile_contig12.1605.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3467120..3467425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.8141057-UTR-P-fluviatile_contig12:3466921..34671191622815490.8141057-UTR-P-fluviatile_contig12:3466921..3467119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3466922..3467119 +
1693562048.6092248-UTR-P-fluviatile_contig12:3466921..34671191693562048.6092248-UTR-P-fluviatile_contig12:3466921..3467119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3466922..3467119 +
1622815490.8444374-UTR-P-fluviatile_contig12:3467425..34674391622815490.8444374-UTR-P-fluviatile_contig12:3467425..3467439Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3467426..3467439 +
1693562048.629917-UTR-P-fluviatile_contig12:3467425..34674391693562048.629917-UTR-P-fluviatile_contig12:3467425..3467439Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3467426..3467439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.824921-CDS-P-fluviatile_contig12:3467119..34674251622815490.824921-CDS-P-fluviatile_contig12:3467119..3467425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3467120..3467425 +
1693562048.6206577-CDS-P-fluviatile_contig12:3467119..34674251693562048.6206577-CDS-P-fluviatile_contig12:3467119..3467425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3467120..3467425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1605.1

>prot_P-fluviatile_contig12.1605.1 ID=prot_P-fluviatile_contig12.1605.1|Name=mRNA_P-fluviatile_contig12.1605.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MSPSRASVKPVPERANQEMHSCKLSQGSRGTPRETKPPRFPFSLSEGLTG
GVLTIAIGWQKEGPAFHYTSSGGFPLHPDFRVTHRTVPVAHRTLNTMAGK
R*
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mRNA from alignment at P-fluviatile_contig12:3466922..3467439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1605.1 ID=mRNA_P-fluviatile_contig12.1605.1|Name=mRNA_P-fluviatile_contig12.1605.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=518bp|location=Sequence derived from alignment at P-fluviatile_contig12:3466922..3467439+ (Porterinema fluviatile SAG_2381)
CCGCGGCGGTCGGCAACCGGTTGGGCACGAGAATCGGGTTCGACCGCCGC
TGCATGTCGACGTTGGCGGCCCCCTTCGGATGGCTGATCACTATCCTTCC
CCCCTGTGTGCAATACAAGCAGTCAAGGATAACGGCCGTTCCCGTCAAAA
GCAAACATACGAATCTGTCCATCACCAATAGAAGCCAAGCAGAATCTCAT
GAGTCCAAGCAGAGCATCCGTGAAGCCCGTGCCGGAGCGGGCAAATCAGG
AGATGCACTCGTGCAAACTGAGCCAGGGTAGTAGGGGAACGCCGCGTGAA
ACGAAGCCGCCGAGGTTCCCGTTTTCTCTGAGCGAGGGTTTGACAGGGGG
AGTACTTACCATTGCAATAGGATGGCAAAAGGAAGGTCCGGCATTCCATT
ACACATCATCGGGCGGTTTTCCGTTGCACCCGGATTTCCGTGTTACACAT
CGTACGGTCCCTGTTGCACATCGAACCCTTAACACAATGGCTGGTAAACG
TTAAAAAAATTGCCGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3466922..3467439+

>mRNA_P-fluviatile_contig12.1605.1 ID=mRNA_P-fluviatile_contig12.1605.1|Name=mRNA_P-fluviatile_contig12.1605.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig12:3466922..3467439+ (Porterinema fluviatile SAG_2381)
ATGAGTCCAAGCAGAGCATCCGTGAAGCCCGTGCCGGAGCGGGCAAATCA
GGAGATGCACTCGTGCAAACTGAGCCAGGGTAGTAGGGGAACGCCGCGTG
AAACGAAGCCGCCGAGGTTCCCGTTTTCTCTGAGCGAGGGTTTGACAGGG
GGAGTACTTACCATTGCAATAGGATGGCAAAAGGAAGGTCCGGCATTCCA
TTACACATCATCGGGCGGTTTTCCGTTGCACCCGGATTTCCGTGTTACAC
ATCGTACGGTCCCTGTTGCACATCGAACCCTTAACACAATGGCTGGTAAA
CGTTAAATGAGTCCAAGCAGAGCATCCGTGAAGCCCGTGCCGGAGCGGGC
AAATCAGGAGATGCACTCGTGCAAACTGAGCCAGGGTAGTAGGGGAACGC
CGCGTGAAACGAAGCCGCCGAGGTTCCCGTTTTCTCTGAGCGAGGGTTTG
ACAGGGGGAGTACTTACCATTGCAATAGGATGGCAAAAGGAAGGTCCGGC
ATTCCATTACACATCATCGGGCGGTTTTCCGTTGCACCCGGATTTCCGTG
TTACACATCGTACGGTCCCTGTTGCACATCGAACCCTTAACACAATGGCT
GGTAAACGTTAA
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