mRNA_P-fluviatile_contig12.1603.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1603.1
Unique NamemRNA_P-fluviatile_contig12.1603.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3449426..3449566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.3651688-CDS-P-fluviatile_contig12:3449425..34495661622815533.3651688-CDS-P-fluviatile_contig12:3449425..3449566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3449426..3449566 +
1693562164.1212866-CDS-P-fluviatile_contig12:3449425..34495661693562164.1212866-CDS-P-fluviatile_contig12:3449425..3449566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3449426..3449566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1603.1prot_P-fluviatile_contig12.1603.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3449426..3449566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1603.1

>prot_P-fluviatile_contig12.1603.1 ID=prot_P-fluviatile_contig12.1603.1|Name=mRNA_P-fluviatile_contig12.1603.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=47bp
EDEKEQLRREKEQLRELLLKKEDRLSRIEQLRANNAPAGIEASHFV*
back to top

mRNA from alignment at P-fluviatile_contig12:3449426..3449566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1603.1 ID=mRNA_P-fluviatile_contig12.1603.1|Name=mRNA_P-fluviatile_contig12.1603.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=141bp|location=Sequence derived from alignment at P-fluviatile_contig12:3449426..3449566+ (Porterinema fluviatile SAG_2381)
GAGGACGAGAAGGAGCAACTACGCAGGGAGAAGGAGCAGCTCCGCGAGCT
CCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCA
ACAACGCCCCCGCAGGTATAGAAGCGTCCCATTTTGTGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:3449426..3449566+

>mRNA_P-fluviatile_contig12.1603.1 ID=mRNA_P-fluviatile_contig12.1603.1|Name=mRNA_P-fluviatile_contig12.1603.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=282bp|location=Sequence derived from alignment at P-fluviatile_contig12:3449426..3449566+ (Porterinema fluviatile SAG_2381)
GAGGACGAGAAGGAGCAACTACGCAGGGAGAAGGAGCAGCTCCGCGAGCT
CCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCA
ACAACGCCCCCGCAGGTATAGAAGCGTCCCATTTTGTGTGAGAGGACGAG
AAGGAGCAACTACGCAGGGAGAAGGAGCAGCTCCGCGAGCTCCTTTTGAA
GAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCC
CCGCAGGTATAGAAGCGTCCCATTTTGTGTGA
back to top