mRNA_P-fluviatile_contig12.1596.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1596.1
Unique NamemRNA_P-fluviatile_contig12.1596.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1596.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.110e-70
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 3 
Query:   84 AVTDCPFRNSRKVPTDKLKMVNQCVAKMDSAVCDYTGTGGGTSDAPDLNDTNDAVLLASFGLAVVMALLVVVGSKSDGQEFIPPVIPCQGKHEAITEEKEDEIRAELAEEKVRSTQSYKTYCKEQ 458
            AVTDCPFRNSRKVP DKLKMV+QCVAKMDSAVCD+TGTGGGTSDAPDLNDT+DAVLLASFGLAVV+ALLVVVGSKSDGQEF PPVIPCQGKHEAITEEKEDEIRAELAE+KVRSTQSYKTYCKEQ
Sbjct:  486 AVTDCPFRNSRKVPPDKLKMVDQCVAKMDSAVCDHTGTGGGTSDAPDLNDTDDAVLLASFGLAVVVALLVVVGSKSDGQEFTPPVIPCQGKHEAITEEKEDEIRAELAEDKVRSTQSYKTYCKEQ 610
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE1.110e-7094.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3425728..3427416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size460
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1596.1prot_P-fluviatile_contig12.1596.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3425728..3426959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.566394-CDS-P-fluviatile_contig12:3425727..34258051622815488.566394-CDS-P-fluviatile_contig12:3425727..3425805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3425728..3425805 -
1693562046.9295838-CDS-P-fluviatile_contig12:3425727..34258051693562046.9295838-CDS-P-fluviatile_contig12:3425727..3425805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3425728..3425805 -
1622815488.5800085-CDS-P-fluviatile_contig12:3426719..34269591622815488.5800085-CDS-P-fluviatile_contig12:3426719..3426959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3426720..3426959 -
1693562046.9404783-CDS-P-fluviatile_contig12:3426719..34269591693562046.9404783-CDS-P-fluviatile_contig12:3426719..3426959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3426720..3426959 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.592618-UTR-P-fluviatile_contig12:3426959..34270151622815488.592618-UTR-P-fluviatile_contig12:3426959..3427015Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3426960..3427015 -
1693562046.956913-UTR-P-fluviatile_contig12:3426959..34270151693562046.956913-UTR-P-fluviatile_contig12:3426959..3427015Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3426960..3427015 -
1622815488.6033893-UTR-P-fluviatile_contig12:3427332..34274161622815488.6033893-UTR-P-fluviatile_contig12:3427332..3427416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3427333..3427416 -
1693562046.9711554-UTR-P-fluviatile_contig12:3427332..34274161693562046.9711554-UTR-P-fluviatile_contig12:3427332..3427416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3427333..3427416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1596.1

>prot_P-fluviatile_contig12.1596.1 ID=prot_P-fluviatile_contig12.1596.1|Name=mRNA_P-fluviatile_contig12.1596.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MVNQCVAKMDSAVCDYTGTGGGTSDAPDLNDTNDAVLLASFGLAVVMALL
VVVGSKSDGQEFIPPVIPCQGKHEAITEEKEDEIRAELAEEKVRSTQSYK
TYCKEQ
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mRNA from alignment at P-fluviatile_contig12:3425728..3427416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1596.1 ID=mRNA_P-fluviatile_contig12.1596.1|Name=mRNA_P-fluviatile_contig12.1596.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-fluviatile_contig12:3425728..3427416- (Porterinema fluviatile SAG_2381)
GGCGATGCGGGTGGAATGAGTGACATTGGTGATGGCCATGACTCCGGTGA
AGATCTTGGACGCATCCTGAGGCCGACAAGGACGGTACGTCATGGTGTTG
TTTTCGCGTCCATAAGAGTTCCCCCCAAGTTCCAAAGTTAGCGCTTGGCG
TAGACACATTATTTAGCACTCGTTGCCAGACATTCCCGTGGTTTGTCTAC
TCCTTGTCGTACCCTCATTTTGTCACACGTTTCCATCCTGGTGTTCGAAA
TTTTCCTTGGTTTATTTTCAGAGAGTGTGGACGGACGTGTGCGCCACGTT
TTTTGGGTTCCGCTCGTGTTTCAAGAACGGGATCGACCGCGTGTCGAAGG
AGTCCTTCCAGAAGATGGAGGCAAACCTGACCCAGGCTGCGCGCGTGGCA
GCCGTGACTGACTGCCCATTTAGGAACAGCCGGAAGGTGCCCACCGATAA
GCTGAAGATGGTCAACCAGTGCGTCGCCAAGATGGATTCGGCTGTCTGCG
ACTACACCGGCACCGGCGGCGGCACCAGCGACGCTCCCGACCTTAACGAC
ACCAACGACGCGGTGCTTCTGGCGTCTTTCGGCTTGGCCGTCGTTATGGC
TCTTCTCGTCGTCGTCGGTTCAAAGAGTGACGGGCAGGAATTCATCCCCC
CGGTTATCCCGTGCCAGGGAAAACACGAGGCCATCACGGAAGAGAAGGTA
TGAGTTTGCGCTTCAAACGTGTTTTGCAGCACTGCATATTTGCGGGCTGG
CTAGAATCATTTGTACGGACAGGCTGTTACATACAGAAGTCTCTCAAGAG
ATGACAAGCCGACTGTCTCTCTCTTCTCCCATTTCATAACCTTTTGCACA
GCTAGTCTCTCGAGAGATGACAAGCCGACCGTCTCTCTCTTCTCCCATTT
CATAACCTTTTGCACAGCTAGTCGCTCGAGAGATGACAAGCCGACCGTCT
CTCTCTTCTCCCATTTCATAACCTTTTGCACAGCTAGTCTCTCGAGAGAT
GACAAGCCGACCGTCTCTCTCTTCTCCCATTTCATAACCTTTTGCACAGC
TAGTCTCTCGAGAGATGACAAGCCGACCGTCTCTCTCTTCTCCCATTTCG
TAATCTTTTGCACAGCTAGTCTCTCCAGAGATGGCAAGCCGACCGTCTCT
CTCTACTCCCATTCCATAGCCTTTTGCACAGCTAGTCTCTCAAGAGATGA
CAAGCCGACCGTCTCTCTCTTCTCCCATTCCATAACCTTTTGCGCAGCTA
GTCTCTCAAGAGATGACAAGCCGACCGTCTCTCTCTTCTCCCATTTTACA
ATCTTTTGCACAGCTAGTCTCTCAAGAGATGACAAGCCGACCGTCTCTCT
CTTCTCCCATTTTACAATCTTTTTCACAGCTAGTCTCTCAAGAGATGACA
AGTCGACCGTCTCTCTCTTCTCCCATTTCAAAATTTCATGCCTTTCAGCC
GATGACGGCAATCTCTACCGGAAAGCCGTTCATTTCAGCTTCTGCACATG
TCCATTTTCTGGAAATCAAATTTAACCCGTCACCGCCCATGCTCGCACAC
ACACACACGCACACCTTGCGATGTCCCCGCACGCGCACGCTTTCGTCCGA
CTCTTGCGAAGGAGGACGAGATTCGTGCGGAGCTCGCGGAGGAAAAGGTT
CGCTCGACTCAATCATACAAGACGTACTGCAAGGAGCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3425728..3427416-

>mRNA_P-fluviatile_contig12.1596.1 ID=mRNA_P-fluviatile_contig12.1596.1|Name=mRNA_P-fluviatile_contig12.1596.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig12:3425728..3427416- (Porterinema fluviatile SAG_2381)
ATGGTCAACCAGTGCGTCGCCAAGATGGATTCGGCTGTCTGCGACTACAC
CGGCACCGGCGGCGGCACCAGCGACGCTCCCGACCTTAACGACACCAACG
ACGCGGTGCTTCTGGCGTCTTTCGGCTTGGCCGTCGTTATGGCTCTTCTC
GTCGTCGTCGGTTCAAAGAGTGACGGGCAGGAATTCATCCCCCCGGTTAT
CCCGTGCCAGGGAAAACACGAGGCCATCACGGAAGAGAAGATGGTCAACC
AGTGCGTCGCCAAGATGGATTCGGCTGTCTGCGACTACACCGGCACCGGC
GGCGGCACCAGCGACGCTCCCGACCTTAACGACACCAACGACGCGGTGCT
TCTGGCGTCTTTCGGCTTGGCCGTCGTTATGGCTCTTCTCGTCGTCGTCG
GTTCAAAGAGTGACGGGCAGGAATTCATCCCCCCGGTTATCCCGTGCCAG
GGAAAACACGAGGCCATCACGGAAGAGAAGGAGGACGAGATTCGTGCGGA
GCTCGCGGAGGAAAAGGTTCGCTCGACTCAATCATACAAGACGTACTGCA
AGGAGCAAGAGGACGAGATTCGTGCGGAGCTCGCGGAGGAAAAGGTTCGC
TCGACTCAATCATACAAGACGTACTGCAAGGAGCAA
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