mRNA_P-fluviatile_contig12.1593.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1593.1
Unique NamemRNA_P-fluviatile_contig12.1593.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: D7G247_ECTSI (NB-ARC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G247_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.780e-46
Identity = 82/119 (68.91%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    1 LEDLASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTS--DGCSSETPRVV-GLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVLS 348
            + DLASRVK PSG PR+RDWYV+R+  VA AC HL++ SS   S     S+E  RVV GL GP G GKSTVASMVI R+DVRASFHKGVLWLPVGQGAKDRLPS   DLAGMV++T LS
Sbjct:    1 MADLASRVKIPSGTPRVRDWYVQRRAEVAHACDHLEITSSSRDSFERNNSAENQRVVFGLAGPGGAGKSTVASMVITREDVRASFHKGVLWLPVGQGAKDRLPSPMLDLAGMVHKTALS 119          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.790e-32
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 1
Query:   13 ASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSETPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVL 345
            A  V  PSGAPRI +W+VERK  VA+AC  L + S  G S+    E PRVVG++GP G+GKST+ASMVIAR+DVR  F+KGVLWLPVG+GAK  LP L   LA MVYETVL
Sbjct:  119 AGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGS--GKSEFF--EMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVL 225          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.190e-31
Identity = 70/112 (62.50%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   19 RVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSS---ETPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVL 345
            RV  PSGAP IRDWYVER  V AQ C HL +    GTS+G  S   E PR+VGL GP G GKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+L F+LA  V ETVL
Sbjct:  172 RVNIPSGAPSIRDWYVERVKVEAQICHHLGI----GTSNGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVL 279          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 7.100e-31
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   19 RVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSS---ETPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVL 345
            RV  PSGAP IRDWYVER  V  Q C HL +    GTS+G  S   E PR+VGL GP G GKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+L F+LA  V ETVL
Sbjct:    6 RVNIPSGAPSIRDWYVERVGVATQICHHLGI----GTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVL 113          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: D7FQM2_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM2_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 6.410e-30
Identity = 68/112 (60.71%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   19 RVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSS---ETPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVL 345
            RV  PSGAP IRDWYVE   V  Q C HL +    GTS+G  S   E PR+VGL GP G GKSTVASMV+ + DV+A F   VLWL VG+GAKDRLP+L F+LA  V ETVL
Sbjct:    6 RVNIPSGAPSIRDWYVEWVGVATQICHHLGI----GTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVL 113          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.650e-29
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   10 LASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSETPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPV-GQGAKDRLPSLTFDLAGMVYETVL 345
            LAS+VK PS APRI+ WY+ R   V   C  L V S     D    E PR+VGL GP+G GKSTV S+V+AR+DVRA F  G++WLPV G+GA+ RLP L   LA MVYET+L
Sbjct:  235 LASKVKVPSRAPRIQAWYIPRSETVEDVCARLGVCSGSAVGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAREDVRAYFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETIL 347          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.390e-24
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   10 LASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSETPRVVGLTGPSGTGKSTVASMVIARKDVRASF-HKGVLWLPVGQGAKDRLPSLTFDLAGMVYETVLS 348
            L S+ K P+ AP ++DW+++R+ VVA  C  L V    G+    +S  P VVG+ GPSG GKST+ASM+IAR DVR  F  K ++WLPVGQGA+DRL  + + LA MV+E V++
Sbjct:  298 LYSKAKGPAEAPLLQDWFIQREPVVAAICDRLGVNDRGGSR---ASGEPPVVGVAGPSGAGKSTIASMIIARNDVRGHFSEKRIVWLPVGQGARDRLLDVMYRLAVMVHELVVN 408          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.850e-24
Identity = 66/117 (56.41%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 LEDLASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSETP--RVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGA-KDRLPSLTFDLAGMVYETV 342
            + DLAS V+ P+ APRIRD +VER  V++Q C      S LG  D  ++     +VVGL G  G+GKSTVASMVI R+DVRA F  GVLWL VGQ A +DRL  L   LAGMVYETV
Sbjct:   17 VADLASTVRIPTTAPRIRDRFVERGEVISQVC------SLLGIEDHTTAYPAEMKVVGLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLELLTSLAGMVYETV 127          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.730e-22
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   25 KDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSETPRVVGLTGPSGTGKSTVASMVIARKDVRASF-HKGVLWLPVGQGAKDRLPSLTFDLAGMVYE 336
            K P+ AP ++DW+++R+ VVA  C  L V +  G S   +S  P VVG+ GPSG GKST+ASM++AR DVR  F  KGV+WL VGQGA+DRL  + + LA MV+E
Sbjct:  259 KSPAEAPLLQDWFIQREPVVAAICDRLGV-NDRGRSR--ASGEPPVVGVAGPSGAGKSTIASMIVARHDVRGHFSQKGVVWLSVGQGARDRLLDVMYRLAVMVHE 360          
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.520e-15
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  160 VVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPV-GQGAKDRLPSLTFDLAGMVYETVL 345
            +VGL GP+G GKSTV S+V+AR+DVRA F  G++WLPV G+GA+ RLP L   LA MVYETVL
Sbjct:    1 MVGLAGPTGCGKSTVTSLVVAREDVRAHFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETVL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G247_ECTSI1.780e-4668.91NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KZP3_9PHAE2.790e-3263.06NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KXU5_9PHAE6.190e-3162.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G5Y4_ECTSI7.100e-3161.61NB-ARC and TPR containing protein n=1 Tax=Ectocarp... [more]
D7FQM2_ECTSI6.410e-3060.71Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JK89_9PHAE3.650e-2955.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI56_9PHAE1.390e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL31_9PHAE8.850e-2456.41NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LT49_ECTSI3.730e-2252.38NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G2X0_ECTSI1.520e-1565.08TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3414897..3415244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D7FZP7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNB-ARC
Ec32 orthologEc-09_003860.1
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.0753448-CDS-P-fluviatile_contig12:3414896..34152441622815533.0753448-CDS-P-fluviatile_contig12:3414896..3415244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3414897..3415244 -
1693562163.5885706-CDS-P-fluviatile_contig12:3414896..34152441693562163.5885706-CDS-P-fluviatile_contig12:3414896..3415244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3414897..3415244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1593.1prot_P-fluviatile_contig12.1593.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3414897..3415244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1593.1

>prot_P-fluviatile_contig12.1593.1 ID=prot_P-fluviatile_contig12.1593.1|Name=mRNA_P-fluviatile_contig12.1593.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
LEDLASRVKDPSGAPRIRDWYVERKVVVAQACQHLDVASSLGTSDGCSSE
TPRVVGLTGPSGTGKSTVASMVIARKDVRASFHKGVLWLPVGQGAKDRLP
SLTFDLAGMVYETVLS
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mRNA from alignment at P-fluviatile_contig12:3414897..3415244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1593.1 ID=mRNA_P-fluviatile_contig12.1593.1|Name=mRNA_P-fluviatile_contig12.1593.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig12:3414897..3415244- (Porterinema fluviatile SAG_2381)
CTTGAAGACTTGGCGAGCAGGGTCAAGGACCCCTCGGGAGCTCCTCGCAT TCGAGATTGGTACGTCGAACGTAAGGTGGTTGTTGCCCAGGCTTGCCAGC ACCTCGACGTCGCGAGCAGTCTTGGCACCTCCGATGGTTGCTCCTCCGAA ACACCACGGGTGGTTGGCCTAACGGGGCCCAGCGGCACGGGAAAATCTAC TGTCGCCTCGATGGTGATCGCGCGCAAAGATGTGCGAGCATCATTCCACA AAGGGGTGCTATGGTTGCCAGTGGGGCAGGGGGCAAAGGACCGCCTTCCT TCCCTCACGTTCGATCTCGCCGGAATGGTGTACGAGACTGTCCTCTCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3414897..3415244-

>mRNA_P-fluviatile_contig12.1593.1 ID=mRNA_P-fluviatile_contig12.1593.1|Name=mRNA_P-fluviatile_contig12.1593.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig12:3414897..3415244- (Porterinema fluviatile SAG_2381)
CTTGAAGACTTGGCGAGCAGGGTCAAGGACCCCTCGGGAGCTCCTCGCAT
TCGAGATTGGTACGTCGAACGTAAGGTGGTTGTTGCCCAGGCTTGCCAGC
ACCTCGACGTCGCGAGCAGTCTTGGCACCTCCGATGGTTGCTCCTCCGAA
ACACCACGGGTGGTTGGCCTAACGGGGCCCAGCGGCACGGGAAAATCTAC
TGTCGCCTCGATGGTGATCGCGCGCAAAGATGTGCGAGCATCATTCCACA
AAGGGGTGCTATGGTTGCCAGTGGGGCAGGGGGCAAAGGACCGCCTTCCT
TCCCTCACGTTCGATCTCGCCGGAATGGTGTACGAGACTGTCCTCTCACT
TGAAGACTTGGCGAGCAGGGTCAAGGACCCCTCGGGAGCTCCTCGCATTC
GAGATTGGTACGTCGAACGTAAGGTGGTTGTTGCCCAGGCTTGCCAGCAC
CTCGACGTCGCGAGCAGTCTTGGCACCTCCGATGGTTGCTCCTCCGAAAC
ACCACGGGTGGTTGGCCTAACGGGGCCCAGCGGCACGGGAAAATCTACTG
TCGCCTCGATGGTGATCGCGCGCAAAGATGTGCGAGCATCATTCCACAAA
GGGGTGCTATGGTTGCCAGTGGGGCAGGGGGCAAAGGACCGCCTTCCTTC
CCTCACGTTCGATCTCGCCGGAATGGTGTACGAGACTGTCCTCTCA
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