mRNA_P-fluviatile_contig12.1592.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1592.1
Unique NamemRNA_P-fluviatile_contig12.1592.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1592.1 vs. uniprot
Match: D7FVU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU8_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.500e-98
Identity = 148/199 (74.37%), Postives = 165/199 (82.91%), Query Frame = 1 
Query:   79 GICPWWCFASDDALDDMVEGRAN---------KRSKWCVDDSATDRVFIPDASRNKYVVVGIGGATVRMSTRLDSPVLRTLPQGTVVVVGQIRGRRAHVVKPMDGWASLSTESGYRILESIGRPTKYKVVYREGIFVRSWPDIDQGRIVRIAPFGTVLKATGKTEIFDAVERVEVEDGWVSMRLREDMGSGVPLLEPLD 648
            G+C  +C   DD  D +V+  +N         + +KWCVDDSAT+RVF+PDASRNKY VVG+GGATVRM+ RLDSPVLRTLPQGTVVVV Q+R RRAH++KPMDGWASLSTESGY ILE+I RPTKYKVVYREGIFVRS P I+ GRIVRIAP GTVLKATGKTEIFDAVERVEVEDGWVSMRLRED GSG PLL  L+
Sbjct:    7 GLC--FCVEGDDKEDALVDNDSNNPYQHEHSKRHAKWCVDDSATERVFVPDASRNKYQVVGLGGATVRMTARLDSPVLRTLPQGTVVVVAQVRSRRAHIIKPMDGWASLSTESGYVILEAIARPTKYKVVYREGIFVRSSPSIEDGRIVRIAPCGTVLKATGKTEIFDAVERVEVEDGWVSMRLREDKGSGAPLLMALN 203
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BLAST of mRNA_P-fluviatile_contig12.1592.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 6.260e-75
Identity = 133/188 (70.74%), Postives = 153/188 (81.38%), Query Frame = 1 
Query:   97 CF---ASDDALDDMVEGRANKRSKWCVDDSATDRVFIPDASRNKYVVVGIGGATVRMSTRLDSPVLRTLPQGTVVVVGQIRGRRAHVVKPMDGWASLSTESGYRILES-IGRPTKYKVVYREGIFVRSWPDIDQGRIVRIAPFGTVLKATGKTEIFDAVERVEVEDGWVSMRLREDMGSGVPLLEPLD 648
            CF   A+DDA+ D V+GR   +S+  VDDSA++RVFIP ASRNKYVVVG+ GATVR+S RLDSPVLRTLP+GTVV V QIR RRAH+VKP+DGWASLST S YRILE  I + TKYKV+Y EGIFVR    ++  RI RIAPFGTVLKATG+TEI+DAVER+EVEDGWVSMRLR D  +G PLL PLD
Sbjct:  365 CFFPCATDDAVGDSVDGR---KSRSFVDDSASERVFIPKASRNKYVVVGLVGATVRVSKRLDSPVLRTLPKGTVVEVAQIRSRRAHIVKPIDGWASLSTVSSYRILEPPITQSTKYKVIYPEGIFVRRMVSLES-RIARIAPFGTVLKATGRTEIYDAVERIEVEDGWVSMRLRND--TGAPLLSPLD 546
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BLAST of mRNA_P-fluviatile_contig12.1592.1 vs. uniprot
Match: D7FVU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU7_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 6.120e-55
Identity = 88/146 (60.27%), Postives = 113/146 (77.40%), Query Frame = 1 
Query:  208 SRNKYVVVGIGGATVRMSTRLDSPVLRTLPQGTVVVVGQIRGRRAHVVKPMDGWASLSTESGYRILESIGRPTKYKVVYREGIFVRSWPDIDQGRIVRIAPFGTVLKATGKTEIFDAVERVEVEDGWVSMRLREDMGSGVPLLEPL 645
            +R+K+VVVG+ GA+VR   RLDSP+LRTL +GTVV V ++R RRAH+VKP++GWASLSTE GY I+E   R ++YKVVY +GI VRS   I+ G +V+I   G +LKATGKT+I D VERV+++ GWVSMRLRED G G  LL P+
Sbjct:    4 NRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVNGWASLSTEDGYGIIEPTKRCSRYKVVYNDGIIVRSTAKIETGEVVKIVHPGDILKATGKTQILDGVERVQIDSGWVSMRLREDNGVGARLLAPM 149
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BLAST of mRNA_P-fluviatile_contig12.1592.1 vs. uniprot
Match: A0A835YRV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.350e-28
Identity = 64/145 (44.14%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:  169 DDSATDRVFIPDASRNKYVVVGIGGATVRMSTRLDSPVLRTLPQGTVVVVGQIRGRRAHVVKPMDGWASLSTESGYRILESI--GRPTKYKVVYREGIFVRSWPDIDQGRIVRIAPFGTVLKATGKTEIFDAVERVEVEDGWVSM 597
            DD+         A+  ++ VVG  GATVR    LDSP+L TL  GT+V V  ++GRR  +V+P+ GWAS STE GY I+E +   RP +Y+VV+ EG+ VR+  D D    VR+ P G +++ TG+    + VERV ++DGWVS+
Sbjct:   14 DDAEGGTAAAAAAAPEQFRVVGRSGATVRGGENLDSPLLCTLSPGTLVTVDLVKGRRCRIVEPVKGWASTSTEKGYVIVERVDSARP-RYRVVFSEGVVVRTAADPDNSEPVRLLPSGEIIEGTGEVVSVEGVERVRIDDGWVSV 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVU8_ECTSI1.500e-9874.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G246_ECTSI6.260e-7570.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVU7_ECTSI6.120e-5560.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRV6_9STRA3.350e-2844.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3410420..3413471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1592.1prot_P-fluviatile_contig12.1592.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3410420..3413471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.9827895-CDS-P-fluviatile_contig12:3410419..34105301622815532.9827895-CDS-P-fluviatile_contig12:3410419..3410530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3410420..3410530 -
1693562163.541708-CDS-P-fluviatile_contig12:3410419..34105301693562163.541708-CDS-P-fluviatile_contig12:3410419..3410530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3410420..3410530 -
1622815532.996639-CDS-P-fluviatile_contig12:3410851..34109561622815532.996639-CDS-P-fluviatile_contig12:3410851..3410956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3410852..3410956 -
1693562163.551044-CDS-P-fluviatile_contig12:3410851..34109561693562163.551044-CDS-P-fluviatile_contig12:3410851..3410956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3410852..3410956 -
1622815533.0086153-CDS-P-fluviatile_contig12:3411585..34117141622815533.0086153-CDS-P-fluviatile_contig12:3411585..3411714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3411586..3411714 -
1693562163.5608222-CDS-P-fluviatile_contig12:3411585..34117141693562163.5608222-CDS-P-fluviatile_contig12:3411585..3411714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3411586..3411714 -
1622815533.018927-CDS-P-fluviatile_contig12:3412643..34127441622815533.018927-CDS-P-fluviatile_contig12:3412643..3412744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3412644..3412744 -
1693562163.5702486-CDS-P-fluviatile_contig12:3412643..34127441693562163.5702486-CDS-P-fluviatile_contig12:3412643..3412744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3412644..3412744 -
1622815533.0340095-CDS-P-fluviatile_contig12:3413266..34134711622815533.0340095-CDS-P-fluviatile_contig12:3413266..3413471Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3413267..3413471 -
1693562163.5791318-CDS-P-fluviatile_contig12:3413266..34134711693562163.5791318-CDS-P-fluviatile_contig12:3413266..3413471Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3413267..3413471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1592.1

>prot_P-fluviatile_contig12.1592.1 ID=prot_P-fluviatile_contig12.1592.1|Name=mRNA_P-fluviatile_contig12.1592.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=217bp
FSEEADIDRDEDEVSVSEREEQDRDTGICPWWCFASDDALDDMVEGRANK
RSKWCVDDSATDRVFIPDASRNKYVVVGIGGATVRMSTRLDSPVLRTLPQ
GTVVVVGQIRGRRAHVVKPMDGWASLSTESGYRILESIGRPTKYKVVYRE
GIFVRSWPDIDQGRIVRIAPFGTVLKATGKTEIFDAVERVEVEDGWVSMR
LREDMGSGVPLLEPLD*
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mRNA from alignment at P-fluviatile_contig12:3410420..3413471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1592.1 ID=mRNA_P-fluviatile_contig12.1592.1|Name=mRNA_P-fluviatile_contig12.1592.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3052bp|location=Sequence derived from alignment at P-fluviatile_contig12:3410420..3413471- (Porterinema fluviatile SAG_2381)
TTCTCGGAGGAAGCAGACATTGACCGCGACGAGGATGAGGTGTCAGTGTC
GGAGAGAGAGGAACAGGACCGCGACACTGGTATCTGTCCCTGGTGGTGTT
TTGCGTCTGACGACGCGCTGGACGACATGGTAGAGGGACGGGCCAACAAG
CGATCCAAGTGGTGTGTCGACGACTCGGCTACGGACCGCGTTTTCATCCC
CGATGGTAAGACCACGAGCATGCCGCCAGGCTTCGTGTTCTGTTGGGCTG
TGGGGTAGTTTGTGTCGAGAGAAACGTCGCGCACCAGTAGCGAAAACAAG
CGAGAGATAAGAGCAGCACACGCCAACCCAAACCACTATTCTCGCTCTTA
TTTTTGTTGTTATCTCCTACTTTCGCCAAAAGCCTTACGCACTACTCCGT
ACATCGCATGAAAATTTCTTCCGAAACTACACAAGTGACTTACAGATTGG
CACTGGGTGGGTTTTTTGAAGTTCTGTCTTCTTCTCGCTTGTCGAGGGAC
CCCATCGCTCTTCTTGTTGAGGCCTTATTTCAGGCAATACCAGTTCCACA
GAGACGAACGACAGTTTCATCAGATTTGATCCCTTATACCGTTTCACACT
GATTTCAGCAGTTATTTTGTCCCCTCTGCCCCTCCCCCCCTCCGCCCTCC
CCCGCCTTTCGCCCCCCTCTCGGTACTCTCGGTACTCTTTTTGTACGCTC
CCCGGCATGTCCATTCTGGTGCTGCAGCCTCAAGAAACAAGTACGTGGTG
GTGGGGATAGGAGGAGCGACGGTCAGAATGAGCACCCGGCTGGATTCGCC
GGTTTTGAGAACGCTGCCGCAGGGAACGGTGAGAGCGCTGAGTGCTCATG
TTCTGGGTGGTGCGCCATGTGCCCATTTTACGATCTGCCCACTACATGTG
CAGGATTGTTTTCCCCTTCGCTCCTCTCTTGACGGCAAGCGGTAGACAAA
GCCAACACCAACACGCGGGATGCACGTCTCCGATTGGTGGAACACGCTAA
GTTACCGTAGGTATCGAGCAAGTGCCGTTTGCGGGGGCGCAATAGCAGCG
CTTGTTGATTATCGCGTCTGGTGCCTATTCTTAGCCCCCGACACACCCAA
GCAGGTGAGCTTTTCGCGCCCAACCTTAGTGTAGATACCTTCATCTTGGG
CAGCGTTGGAGACATTGGCAGGAGTTTTCACGAAAGCTATAGTTTTCCCG
CCACAGCGTCCTTTCCTTCGCCGTAGAGCTGAGCACCAACAGAGGTAGGT
CTCTTGCTGCGAGAAATGAGATCTTCGTCGGTGATACCTCGGCACATGCT
ATCACACCTCATATTCAGGCAGCACCTGTTTTGTCTTGGAGAACAATTTC
GGAAAAACAAAATTCCGGTTGCACGGACGTGGCCACACGAAGGAAGTGCA
CGACAGAAAATTTGACTCCAAACCAGCTTCTAGTTCGCAGGGATGGTAAC
CGCAGGGTGTCTGTCGGGGAACAGAGAAGGGGGCAGGCACACCAGTTGGT
TCGTTGGCGTGGGCCCAACCCGCCCTTGGCTGTTTTTTGCTTCTCAGCTG
CCCTTGTCCCCGATCGCTTGCTTCCTTCACGACGTTTTTTCGTGCTCACC
ATGTACATACATACCGGGTAGATACATTTATGCGTTGGAAATGGATGATT
CGCGGTGCTCGGTCCTGACGGGCCTGGTTTCGTCTATACTCGCAAGCCAG
ATATGCCTCCCTCCCTTCTCTCCTTCCCGAAAACGCTGTCGTGTCTATGC
TCACCAGGTGGTGGTGGTCGGCCAGATTCGGGGACGACGAGCACACGTAG
TCAAGCCGATGGACGGCTGGGCGAGCTTGTCGACGGAGAGTGGTTACCGT
ATTTTGGAGTCGATCGGGCGGCCTACCAAGTACAAGGTGTGGATGTGTAT
GGTGCTGATATGAGAGTGTTTGATGCACCTGACGAGGCTCTCGCTGCTGC
TACTGCTGTTGCTTATCCTTCTAGACATGAAGAGAAATTCATCCTGTATG
ATGAGTTGTACGGCCCAGCAGGCTCGTCGCCGGTGCGCCTGCTCGAAGGA
TCTTCATGGTGGCGCGTTGTTCTTCCAGCATACTTCGATATATTCGCTCC
GCCGGGTAGACGAGGAATAATGCAGAAGCCTGAAGGAAGATGCGCTTGCT
TGCCTCTTGGTGCCCAGAAATTTGAGCGCTGTGACGCTTTTTCCCTTGCA
CCGCACGCCAGAAAAAACCAAACAGCACCACCAGCAACCCACCAGCACAT
TGGTTGAAAACCCCGTCATAAATATTGTCGTTCCGAACCGCGACCGGAAT
CCGAGACTGCTGTATGCTATCACCAAAGCCCCCCCACAGCAACGCGTTTT
GTGCCGACTACGCGCCATACGTGCGCGATGGAGAGGCTGAATACGTGACT
AGGATGTAGTCTAAGGCGAAGGTTGGGACCTACGTGTACACACAGCAGTA
GGAGTGTGACACCCCCGTTCGTCTGTGTCATCTATCTGTTGCTCCGCCCA
ATCTCTATTGTTTAGGTGGTGTATCGAGAAGGAATATTCGTGCGGAGCTG
GCCGGATATCGATCAAGGCCGGATAGTCAGAATCGCACCGTTCGGGACCG
TTCTTAAGGCTACTGGCAAGGTCAGAGACAAGGCAGCAAAGTGGGGACGG
TGTGCTGTTGGTAGTTGTTTTGTTGTGCTCATAGTCATGGGTGTTAGGCT
TGTTTTGTGCTGCAGTGGTTCGTTGCTGATGCTAGGATCGTCGCTGGCGT
TGTGGTTGTTTTCTGGGGCTGCTTGCCCTGTCGTTTCTTCGTCAAAGTTT
GAAGTTTCGCGGGTTGGTTGTTTCTCCAAGGTCGGGAGGTTCATAATCTT
TCTACCGCCTGAGAATGAAATCTGCACCGTATATTTCTTCGCCACTTCTA
TGTACCACCCCATCCCCTTCTCCCCACCTTTGCGCCTCCAGACGGAAATT
TTTGACGCGGTGGAGCGAGTAGAGGTCGAGGACGGCTGGGTTTCGATGCG
GCTGCGAGAAGACATGGGGTCTGGAGTACCATTACTCGAGCCGCTTGACT
AG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3410420..3413471-

>mRNA_P-fluviatile_contig12.1592.1 ID=mRNA_P-fluviatile_contig12.1592.1|Name=mRNA_P-fluviatile_contig12.1592.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1302bp|location=Sequence derived from alignment at P-fluviatile_contig12:3410420..3413471- (Porterinema fluviatile SAG_2381)
TTCTCGGAGGAAGCAGACATTGACCGCGACGAGGATGAGGTGTCAGTGTC
GGAGAGAGAGGAACAGGACCGCGACACTGGTATCTGTCCCTGGTGGTGTT
TTGCGTCTGACGACGCGCTGGACGACATGGTAGAGGGACGGGCCAACAAG
CGATCCAAGTGGTGTGTCGACGACTCGGCTACGGACCGCGTTTTCATCCC
CGATGTTCTCGGAGGAAGCAGACATTGACCGCGACGAGGATGAGGTGTCA
GTGTCGGAGAGAGAGGAACAGGACCGCGACACTGGTATCTGTCCCTGGTG
GTGTTTTGCGTCTGACGACGCGCTGGACGACATGGTAGAGGGACGGGCCA
ACAAGCGATCCAAGTGGTGTGTCGACGACTCGGCTACGGACCGCGTTTTC
ATCCCCGATGCCTCAAGAAACAAGTACGTGGTGGTGGGGATAGGAGGAGC
GACGGTCAGAATGAGCACCCGGCTGGATTCGCCGGTTTTGAGAACGCTGC
CGCAGGGAACGCCTCAAGAAACAAGTACGTGGTGGTGGGGATAGGAGGAG
CGACGGTCAGAATGAGCACCCGGCTGGATTCGCCGGTTTTGAGAACGCTG
CCGCAGGGAACGGTGGTGGTGGTCGGCCAGATTCGGGGACGACGAGCACA
CGTAGTCAAGCCGATGGACGGCTGGGCGAGCTTGTCGACGGAGAGTGGTT
ACCGTATTTTGGAGTCGATCGGGCGGCCTACCAAGTACAAGGTGGTGGTG
GTCGGCCAGATTCGGGGACGACGAGCACACGTAGTCAAGCCGATGGACGG
CTGGGCGAGCTTGTCGACGGAGAGTGGTTACCGTATTTTGGAGTCGATCG
GGCGGCCTACCAAGTACAAGGTGGTGTATCGAGAAGGAATATTCGTGCGG
AGCTGGCCGGATATCGATCAAGGCCGGATAGTCAGAATCGCACCGTTCGG
GACCGTTCTTAAGGCTACTGGCAAGGTGGTGTATCGAGAAGGAATATTCG
TGCGGAGCTGGCCGGATATCGATCAAGGCCGGATAGTCAGAATCGCACCG
TTCGGGACCGTTCTTAAGGCTACTGGCAAGACGGAAATTTTTGACGCGGT
GGAGCGAGTAGAGGTCGAGGACGGCTGGGTTTCGATGCGGCTGCGAGAAG
ACATGGGGTCTGGAGTACCATTACTCGAGCCGCTTGACTAGACGGAAATT
TTTGACGCGGTGGAGCGAGTAGAGGTCGAGGACGGCTGGGTTTCGATGCG
GCTGCGAGAAGACATGGGGTCTGGAGTACCATTACTCGAGCCGCTTGACT
AG
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