mRNA_P-fluviatile_contig12.1590.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1590.1
Unique NamemRNA_P-fluviatile_contig12.1590.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Match: Q8QNP2_ESV1K (EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP2_ESV1K)

HSP 1 Score: 300 bits (768), Expect = 1.760e-92
Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = -2 
Query: 1825 DSLIYYISKSDKPKTLREWELLLSKQQSLECVICFERITKSAYARPCPTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGIPMADVKKSKDMCASQIKELTGFDHLEDLIDSAMVAAGEKVYDVRDQLTLAREQARQSVA 2286
            DSLIYYIS+SDKPKTL+EWELLLSKQQSLECVICFERIT SA ARPC TCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGIPMADVKKSKDMCASQIKELTGFDHLEDLIDSAMVAAGEKVYDVRDQLTL+REQARQSVA
Sbjct:   79 DSLIYYISESDKPKTLKEWELLLSKQQSLECVICFERITASADARPCLTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGIPMADVKKSKDMCASQIKELTGFDHLEDLIDSAMVAAGEKVYDVRDQLTLSREQARQSVA 232
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BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Match: D7FZV2_ECTSI (EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.250e-45
Identity = 100/145 (68.97%), Postives = 107/145 (73.79%), Query Frame = 2 
Query: 1052 MPYMIHAVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTKQTQEDVDLARRARELLARQEVASPGSSGIVHRA--------PSQGEGAAAGGVDGERQRRLGSCVGVGAARGVGNGDERDISDDRGVPVKP 1462
            MPYMIHAVNM IVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTK+TQEDVDLARRARELL    +A         RA          +G+         ERQR+LGSC G GA RGVG+GD  DISDDRG+PVKP
Sbjct:  136 MPYMIHAVNMGIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLHSYTKETQEDVDLARRARELLTNA-LADGADKRWRRRALLVLCIARHRRGKAQLLDFWGRERQRQLGSCGGAGAGRGVGSGDLEDISDDRGIPVKP 279
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BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.320e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = -3 
Query: 1638 IHIPVAQTPSGKLVVPSCSKTEGPFTCLECAHKLGTETG 1754
            +HIPVA+TPSGKLVVPSCSK EGPF CLECA  L  + G
Sbjct:    3 LHIPVAETPSGKLVVPSCSKAEGPFKCLECAGALVLKQG 41
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BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-7
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = -1 
Query: 1529 LKQGKINV---AHCHLSPDCSGGGESALHKAAKLLIKK*CSRL 1648
            LKQGKI V   AH HLSP CSGGGESALHKAAKLL++K CSRL
Sbjct:   38 LKQGKIKVFHFAHRHLSPGCSGGGESALHKAAKLLVEKYCSRL 80
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BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.940e-7
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 2 
Query: 2510 LLLSRLDGTHVTPNTPDFRDTRQARDWASKAG 2605
            L  SRLDGTHVTPNTPDFRDTRQARDWA +AG
Sbjct:  379 LEFSRLDGTHVTPNTPDFRDTRQARDWADRAG 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNP2_ESV1K1.760e-9296.10EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7FZV2_ECTSI1.250e-4568.97EsV-1-157 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K8T5_9PHAE5.320e-874.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E0_ECTSI1.620e-779.07EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7FVS7_ECTSI5.940e-787.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3406115..3408719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2605
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1590.1prot_P-fluviatile_contig12.1590.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3407166..3407579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.866196-UTR-P-fluviatile_contig12:3406114..34071651622815532.866196-UTR-P-fluviatile_contig12:3406114..3407165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3406115..3407165 +
1693562163.4839408-UTR-P-fluviatile_contig12:3406114..34071651693562163.4839408-UTR-P-fluviatile_contig12:3406114..3407165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3406115..3407165 +
1622815532.8944385-UTR-P-fluviatile_contig12:3407579..34087191622815532.8944385-UTR-P-fluviatile_contig12:3407579..3408719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3407580..3408719 +
1693562163.502155-UTR-P-fluviatile_contig12:3407579..34087191693562163.502155-UTR-P-fluviatile_contig12:3407579..3408719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3407580..3408719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.8814604-CDS-P-fluviatile_contig12:3407165..34075791622815532.8814604-CDS-P-fluviatile_contig12:3407165..3407579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3407166..3407579 +
1693562163.493206-CDS-P-fluviatile_contig12:3407165..34075791693562163.493206-CDS-P-fluviatile_contig12:3407165..3407579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3407166..3407579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1590.1

>prot_P-fluviatile_contig12.1590.1 ID=prot_P-fluviatile_contig12.1590.1|Name=mRNA_P-fluviatile_contig12.1590.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=138bp
MPYMIHAVNMDIVEIVEFLLKSGADETVVDNEGKTAMQRLDGGILHPNLH
SYTKQTQEDVDLARRARELLARQEVASPGSSGIVHRAPSQGEGAAAGGVD
GERQRRLGSCVGVGAARGVGNGDERDISDDRGVPVKP*
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mRNA from alignment at P-fluviatile_contig12:3406115..3408719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1590.1 ID=mRNA_P-fluviatile_contig12.1590.1|Name=mRNA_P-fluviatile_contig12.1590.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2605bp|location=Sequence derived from alignment at P-fluviatile_contig12:3406115..3408719+ (Porterinema fluviatile SAG_2381)
TGTGTGTGTGTGTGTGTGTGTGTTGTGTTTTCTCCTCTCTTCCGGTCTGC
TACAATAACTGGCGGAAGTTTTGCTTGGTACTACTGCTGTGGGGAGACGG
ACATCTGTTGTAGGTGGTTGCCCATTTGTTGCGCGGTGGTGGATCAGCGG
ATCGTGCTGGGTTTGGAGAAGGTATCTGTAAAACCTGGTGAGTCGTGTCG
TTTTCGGTGGCGATGCAAGAGGCTCAAGTATAGCCTTGATGGTGTTTTGT
TTTCACGGGAATTGAAAACCTCGAAATACCGATCCGTTTGGTTGATTTTT
CAGCGCCCTCCATCAATTTTTTATTTCAACAACCATCCATCCACTCGTGC
AATAAGCAGGTAGCTCGCGTGACACTGGAGGCTCACGGAACAACGAGGCG
AAAGCCGGCTAGGATGAACACTGTTGTAGCATGATGCGATCTATTTATTT
TCGAGGGAGCTCCGACCGGGGTGTAGAAGGCGTGTTTGCATCACTCAGGG
AAATATTTGGATAGGCGTCGTGTTGTGCTTTTTTTTTCGGGGGGGGCGAA
GGGTATGGGAAGCGGGCAACGTGGTCATGCCGTGGTACGGGTGTACTTTT
GTGTGATGAGGTTGGTCCTTTTGGCAACACGTTGTTATCACGTCTACACC
GTTTGTCGTCGCATTACTGTTTTTGGTTGGGAATGTCAGAACACAACGCG
TGACTGAAACACGATTTGGTGTAGTTTGATGCGAATCCTCATGGAAGCTG
GGGCTGACACAACTCTTCGAGACCGGGGCCACCATTCCCCACTCGTCTGG
TGGTGTAAGAACGATCATCGAGCTCGGGGTGGACGTCAATGGTGCTGACT
GGTCATTCACACCGCTTCATTGGACGTCGGACAAGACCACGGTGGATCTA
CCCATCGAGGCTGGGGCCAACATCGAAGCTCGGGAGGTAGGAGGCAGCAC
GCCTCTTAATTGTACTCACGAATTGGACGAAATCTGCGCCCTCGTGAACC
ACGGTGCAAACTTCAATACACAGGATAAGGACGGCCGCACGCCTTTGCAC
AATGCCCTACATGATCCATGCTGTTAATATGGACATCGTCGAGATAGTGG
AGTTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGTTGACAATGAAGGC
AAGACAGCCATGCAGAGATTGGATGGAGGTATACTACATCCAAATTTACA
TTCTTACACCAAACAAACACAAGAGGACGTAGACCTTGCCAGGCGCGCAC
GCGAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGTATT
GTGCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTGCTGGAGGGGTGGA
TGGGGAACGCCAGCGACGACTGGGCTCATGTGTCGGCGTGGGTGCTGCAC
GCGGGGTTGGGAATGGGGATGAAAGGGATATTTCGGATGATCGTGGGGTA
CCTGTGAAGCCGTGAGTTAATGGGGGTTTTGGTGGCGCTGCTCGAAGCTT
GAATAGTTTGGTTCGTGTTTTGTTTTCCCAGCCGCGAACATTATTTTTTG
ATAAGCAACTTGGCTGCCTTGTGGAGGGCCGATTCTCCCCCGCCGGAACA
GTCGGGCGACAGGTGGCAATGCGCGACGTTGATCTTGCCCTGTTTCAGTA
CCCAACTTGTGGGCACATTCGAGGCACGTGAATGGGCCCTCGGTTTTGGA
ACAGGAAGGCACGACCAGTTTGCCTGATGGGGTTTGGGCCACGGGGATGT
GGATGGGGCATTGTGGTTTGATTTGAAATAACATTTTAATTTGACGGAGG
TGGGGCGCAGTCGGGTGTACGCTAAGCTACACTTTGCCTCGCTTGCTCTC
GAGCAAGGGTCAACTGGTCTCGCACGTCGTAAACCTTCTCCCCGGCCGCC
ACCATTGCGCTGTCAATCAGGTCTTCTAGGTGATCGAACCCTGTCAGCTC
CTTGATTTGGCTCGCGCACATGTCCTTCGACTTTTTTACGTCGGCCATCG
GGATACCAAGCTGCGGAAGCAACTGGGCCGCGTACACGCCCCGATTACGC
ACATAGCTTTTCATGTCGAAGGCTTTGCATACCGGGCATTCCGGGAGAGA
CTGTTTCCAATTGCAATCAGCGCAACACATTGCGTGGCACGTGGGGCAGG
GGCGTGCATACGCCGATTTCGTTATACGTTCGAAGCAAATGACACACTCT
AGGGATTGCTGCTTTGAGAGTAAAAGCTCCCACTCCCTCAACGTCTTGGG
CTTGTCGGACTTGCTGATGTAGTAAATCAGGCTGTCCCTTGCGCGTATGC
CCTTCCTCGTGACGTCTAAATCATCTGTATGCCTTGTTGTACCGCCTTTT
TTGTCCCTCTGTTGCCCCTATTTCATGTTCTCCTCACTCTCACCGCCTTC
CTCTCGGTATGGTTCTACCTTTTTCTCTTTGCCGTCCTGAAAAGGCACCG
GCCAACGTGGAAACGAATCTCCTCCCGTACTGACCTGCCCCTCGCTTGAA
TCCCCTTCCCTCCTTCTGTCCAGACTTGACGGCACGCACGTTACCCCCAA
TACGCCGGACTTCCGAGACACGCGACAAGCGCGGGACTGGGCGAGCAAGG
CCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3406115..3408719+

>mRNA_P-fluviatile_contig12.1590.1 ID=mRNA_P-fluviatile_contig12.1590.1|Name=mRNA_P-fluviatile_contig12.1590.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig12:3406115..3408719+ (Porterinema fluviatile SAG_2381)
ATGCCCTACATGATCCATGCTGTTAATATGGACATCGTCGAGATAGTGGA
GTTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGTTGACAATGAAGGCA
AGACAGCCATGCAGAGATTGGATGGAGGTATACTACATCCAAATTTACAT
TCTTACACCAAACAAACACAAGAGGACGTAGACCTTGCCAGGCGCGCACG
CGAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGGCTCTTCTGGTATTG
TGCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTGCTGGAGGGGTGGAT
GGGGAACGCCAGCGACGACTGGGCTCATGTGTCGGCGTGGGTGCTGCACG
CGGGGTTGGGAATGGGGATGAAAGGGATATTTCGGATGATCGTGGGGTAC
CTGTGAAGCCGTGAATGCCCTACATGATCCATGCTGTTAATATGGACATC
GTCGAGATAGTGGAGTTCTTGCTGAAGTCAGGCGCAGACGAGACCGTGGT
TGACAATGAAGGCAAGACAGCCATGCAGAGATTGGATGGAGGTATACTAC
ATCCAAATTTACATTCTTACACCAAACAAACACAAGAGGACGTAGACCTT
GCCAGGCGCGCACGCGAGCTTCTGGCTCGACAAGAGGTGGCGTCGCCGGG
CTCTTCTGGTATTGTGCATCGCGCGCCATCGCAGGGGGAAGGCGCAGCTG
CTGGAGGGGTGGATGGGGAACGCCAGCGACGACTGGGCTCATGTGTCGGC
GTGGGTGCTGCACGCGGGGTTGGGAATGGGGATGAAAGGGATATTTCGGA
TGATCGTGGGGTACCTGTGAAGCCGTGA
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