mRNA_P-fluviatile_contig12.1589.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1589.1
Unique NamemRNA_P-fluviatile_contig12.1589.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 3.550e-113
Identity = 168/197 (85.28%), Postives = 178/197 (90.36%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQNKIQEELEAASSTSHVTERQEKVSERNGEGDIEISHGVYYKRTELQRLQYYYDKSYAFDPKNIGVILGETRVRIDGGVHVVKSVDHGKYTLEGRDSTVTQWELLENRCDEGVTLDTDLRRFIIHL 591
            +QSATGRGQRNRRARDLDAM TGAGKQDEDHDHWQAREAVWASW DQEAYDKKMAETKDRRDAARTVHEAKQ + QEELEAASSTSHVTERQEKVS+ NGE DIEI  GVY+KRTE++ L+YYYDKSY FDPK+IGV+ GET V IDGGVHVVKSVD GKY LEG DST+TQWELL NRC EGVTLDTDLRRFI HL
Sbjct:    3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASSTSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.080e-94
Identity = 152/197 (77.16%), Postives = 167/197 (84.77%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQNKIQEELEAASSTSHVTERQEKVSERNGEGDIEISHGVYYKRTELQRLQYYYDKSYAFDPKNIGVILGETRVRIDGGVHVVKSVDHGKYTLEGRDSTVTQWELLENRCDEGVTLDTDLRRFIIHL 591
            +QSA  RG RNR A     MPTGA K+D+DHDHW+ REAVWA WGDQEAYDKKMAETK++RDAAR VHEA Q K Q ELEAASST HVTERQE+ S+ NGEGDIEIS GVYYKR EL+ LQYYYDKSYAFDPKNIGV+L ET V+ID  +H VKSVDHGKYTLEGR+S +TQWELLENRCDE VTLDTDLRRFI+HL
Sbjct:    3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHL 199
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.550e-61
Identity = 139/332 (41.87%), Postives = 158/332 (47.59%), Query Frame = 1 
Query:   28 RNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQNKIQEELEAASSTSHVTERQE-----------------------------------------------------------------------------------------------------------------KVSERNG-------------------------------EGDIEISHGVYYKRTELQRLQYYYDKSYAFDPKNIGVILGETRVRIDGGVHVVKSVDHGKYTLEGRDSTVTQWELLENRCDEGVTLDTDLRRFIIHL 591
            RNR A     MPTGA K+D+DHDHW+ REA WA WG Q+A DKKMA+TK++RD AR VHEA Q K +E+LEA SST HVTERQE                                                                                                                 K  ER+G                               +GDIEIS GVYYKR EL+ LQYYYDKSY  DP+NI V+ G+TRV+IDGGVHVVKSVDHGKYTLEGR+ST+TQWELLE RCDEGVTL TDLRRFI+HL
Sbjct:   24 RNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLEATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHL 355
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.670e-24
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:  256 SHVTERQEKVSER-----NGEGDIEISHGVYYKRTELQRLQYYYDKSYAFDPKNIGVILGETRVRIDGGVHVVKSVDHGKYTLEGRDSTVTQWELLENRCDEGVTLDTDLRRFII 585
            +H+   Q +V++R     +    ++++  V +KR+EL  L+YY+DK+Y F+P +I V++G TRV+IDG + VV+S DHGKY L G    +TQWELL+NR  EG TLD +LRRFII
Sbjct:  177 NHLASAQGQVADRGLCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGH-KPITQWELLQNRRGEGATLDDELRRFII 290
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: A0A6H5JU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.840e-20
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   58 MPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQNKIQ 228
            MPTGAGK+D+DHDHW  REAVWA WG QEAYDKKMAETK+RRDAAR  HE K+ + Q
Sbjct:    1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
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BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-6
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  391 DPKNIGVILGETRVRIDGGVHVVKSVDHGKYTLE----GRDSTVTQWELLENRCDEG---VTLDTDLRRFIIHL 591
            +P +IG+I+GETRV++DG  + V SV+ G Y+L          + QWE+LENR  +G    TL+ D R+F I L
Sbjct:  189 NPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISL 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQV3_ECTSI3.550e-11385.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ27_ECTSI1.080e-9477.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE6.550e-6141.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE6.670e-2447.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU26_9PHAE1.840e-2075.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK98_9PHAE1.780e-643.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3394321..3395683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue3e-14
Seed eggNOG ortholog2880.D7FHJ0
EggNOG OGs2EVBK@1,2SXC2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.8071024-CDS-P-fluviatile_contig12:3394320..33946171622815532.8071024-CDS-P-fluviatile_contig12:3394320..3394617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3394321..3394617 +
1693562163.46124-CDS-P-fluviatile_contig12:3394320..33946171693562163.46124-CDS-P-fluviatile_contig12:3394320..3394617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3394321..3394617 +
1622815532.821275-CDS-P-fluviatile_contig12:3395389..33956831622815532.821275-CDS-P-fluviatile_contig12:3395389..3395683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3395390..3395683 +
1693562163.4743423-CDS-P-fluviatile_contig12:3395389..33956831693562163.4743423-CDS-P-fluviatile_contig12:3395389..3395683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3395390..3395683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1589.1prot_P-fluviatile_contig12.1589.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3394321..3395683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1589.1

>prot_P-fluviatile_contig12.1589.1 ID=prot_P-fluviatile_contig12.1589.1|Name=mRNA_P-fluviatile_contig12.1589.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=197bp
AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAY
DKKMAETKDRRDAARTVHEAKQNKIQEELEAASSTSHVTERQEKVSERNG
EGDIEISHGVYYKRTELQRLQYYYDKSYAFDPKNIGVILGETRVRIDGGV
HVVKSVDHGKYTLEGRDSTVTQWELLENRCDEGVTLDTDLRRFIIHL
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mRNA from alignment at P-fluviatile_contig12:3394321..3395683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1589.1 ID=mRNA_P-fluviatile_contig12.1589.1|Name=mRNA_P-fluviatile_contig12.1589.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1363bp|location=Sequence derived from alignment at P-fluviatile_contig12:3394321..3395683+ (Porterinema fluviatile SAG_2381)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGACCAGGAGGCTTAT
GACAAAAAGATGGCTGAGACGAAGGATCGGCGCGACGCGGCGCGCACCGT
GCACGAGGCCAAACAGAACAAAATACAGGAGGAGTTGGAGGCTGCTTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGGTTTCCGAACGAAATGTG
AGAAATTTGTGATTGGTTTGTTGCTGCTGGTATGATCAAACGACACACGT
TGCCCCCACACATCGGTTGCTTTTGTGTACGCAACCGCCTTCCGCTCCCC
CTTTCGCTTAAATTGTCACCGTCTTCCCATCTCTCTCACCCAAAAAAACA
GTGTCAGTCAAAGAGGGCGGTGGGAGCGGAGGAAACGCAACATCATCCGG
TTGGTGGACGAAAGAGAACGAAAACAACGGCCGACGCGACTCTTGAGGAC
AATCGTCTCGAGGCTATGGACGTTGATGACGTTGGTGGAGACGTTGGTGG
CGATTTTGGTGGCGACTTTGGTGGAGATGGCAGCGATGACGACGGTGGCA
GCGGTGGCACCGGCGGCAGCGGTGGAGATGGCAGCGATGATGACGGTGGC
AGCGGTGGCGGTGGTGGCAGCGGCAGAGATGGCGGCGATGACGACGGTGG
CAGCGGTGGCGGTGGCAGCGGCAAGATTGGTGGCGGTGGCACCGGTGGCG
GTAGTAGCGGCGGTGGCGGCGGCGCCCCCGTGCGGAAGGTCGCGTATAAT
AAACGACCAAAATTATACTCTTCTACAAAAATAATCGCACGCCTGGTTGA
GCCGTGGCAGGACGGAAGTCGTGAGTGGGTGGAATGCAAAAGAGAGTCGG
GTGGTGAAAAAGCTGAAGAGAGGAAGGGTACGTTCTCTCGCGCAGCAAAT
GAACCGAGTGGAAACACTTCGATACCGGTCATGGTCAAACTACTGGGTGA
TGGCTTGTGTGCTGACCAGGGCGAGGGTGATATCGAGATCTCACACGGGG
TGTACTACAAGCGCACCGAGCTTCAGCGTTTGCAGTATTACTACGACAAG
TCCTACGCGTTCGACCCGAAGAACATCGGTGTGATTCTGGGTGAGACGAG
AGTCAGGATCGATGGAGGGGTTCACGTCGTGAAATCAGTCGATCACGGCA
AATACACACTGGAAGGTCGTGATTCCACAGTAACCCAGTGGGAGCTGCTG
GAAAACCGGTGCGATGAGGGGGTGACACTGGACACCGACCTCCGGCGGTT
CATCATCCATCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3394321..3395683+

>mRNA_P-fluviatile_contig12.1589.1 ID=mRNA_P-fluviatile_contig12.1589.1|Name=mRNA_P-fluviatile_contig12.1589.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1182bp|location=Sequence derived from alignment at P-fluviatile_contig12:3394321..3395683+ (Porterinema fluviatile SAG_2381)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGACCAGGAGGCTTAT
GACAAAAAGATGGCTGAGACGAAGGATCGGCGCGACGCGGCGCGCACCGT
GCACGAGGCCAAACAGAACAAAATACAGGAGGAGTTGGAGGCTGCTTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGGTTTCCGAACGAAATGCG
CAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCTGGA
TGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACTGGC
AAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGACCAGGAGGCTTATGAC
AAAAAGATGGCTGAGACGAAGGATCGGCGCGACGCGGCGCGCACCGTGCA
CGAGGCCAAACAGAACAAAATACAGGAGGAGTTGGAGGCTGCTTCTTCAA
CATCGCACGTAACCGAGAGGCAGGAGAAGGTTTCCGAACGAAATGGCGAG
GGTGATATCGAGATCTCACACGGGGTGTACTACAAGCGCACCGAGCTTCA
GCGTTTGCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAACA
TCGGTGTGATTCTGGGTGAGACGAGAGTCAGGATCGATGGAGGGGTTCAC
GTCGTGAAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGTGATTC
CACAGTAACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGA
CACTGGACACCGACCTCCGGCGGTTCATCATCCATCTTGGCGAGGGTGAT
ATCGAGATCTCACACGGGGTGTACTACAAGCGCACCGAGCTTCAGCGTTT
GCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAACATCGGTG
TGATTCTGGGTGAGACGAGAGTCAGGATCGATGGAGGGGTTCACGTCGTG
AAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGTGATTCCACAGT
AACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGACACTGG
ACACCGACCTCCGGCGGTTCATCATCCATCTT
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